Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013977

Physical Location & Seq

Genomic Coordinates Forward (+)

29364072 .. 29366207

Gene Structure 2136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G78080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCAGCTGCTATGAATTTGTACACTTGTAGCAGATCGTTTCAAGACTCTGGTGGTGAACTCATGGACGCGCTTGTACCTTTTATCAAAAGCGTTTCCGATTCTCCTTCTTCTTCTTCTGCAGCGTCTGCGTCTGCGTTTCTTCACCCCTCTGCGTTTTCTCTCCCTCCTCTCCCCGGTTATTACCCGGATTCAACGTTCTTGACCCAACCGTTTTCATACGGGTCGGATCTTCAACAAACCGGGTCATTAATCGGACTCAACAACCTCTCTTCTTCTCAGATCCACCAGATCCAGTCTCAGATCCATCATCCTCTTCCTCCGACGCATCACAACAACAACAACTCTTTCTCGAATCTTCTCAGCCCAAAGCCGTTACTGATGAAGCAATCTGGAGTCGCTGGATCTTGTTTCGCTTACGGTTCAGGTGTTCCTTCGAAGCCGACGAAGCTTTACAGAGGTGTGAGGCAACGTCACTGGGGAAAATGGGTGGCTGAGATCCGTTTGCCGAGAAATCGGACTCGTCTCTGGCTTGGGACTTTTGACACGGCGGAGGAAGCTGCGTTGGCCTATGATAAGGCGGCGTACAAGCTGCGCGGCGATTTCGCCCGGCTTAACTTCCCTAACCTACGTCATAACGGATCTCACATCGGAGGCGATTTCGGTGAATATAAACCTCTTCACTCCTCAGTCGACGCTAAGCTTGAAGCTATTTGTAAAAGCATGGCGGAGACTCAGAAACAGGACAAATCGACGAAATCATCGAAGAAACGTGAGAAGAAGGTTTCGTCGCCAGATCTATCGGAGAAAGTGAAGGCGGAGGAGAATTCGGTTTCGATCGGTGGATCTCCACCGGTGACGGAGTTTGAAGAGTCCACCGCTGGATCTTCGCCGTTGTCGGACTTGACGTTCGCTGACCCGGAGGAGCCGCCGCAGTGGAACGAGACGTTCTCGTTGGAGAAGTATCCGTCGTACGAGATCGATTGGGATTCGATTCTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033554 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045595 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071369 GO:0071470 GO:0071472 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

334

Amino Acids

36.61

Weight (kDa)

6.56

Isoelectric Point (pI)

58.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	151 - 200	3.7e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78080
fragaria_vesca	FvH4_5g37820
malus_domestica	MD08G1180200.v1.1 MD15G1365500.v1.1
prunus_persica	Prupe.1G513600_v2.0.a1 Prupe.3G009400_v2.0.a1
pyrus_communis	pycom08g15420 pycom15g32790
rosa_chinensis	RchiOBHm_Chr7g0239701
rosa_laevigata	RLG00000000738
rosa_multiflora	Rmu_sc0000063.1_g000026
rosa_roxburghii	Rroxscaffold_3G00220810
rosa_samantha	Rh7AG483000 Rh7BG455900 Rh7CG500600 Rh7DG468800
rosa_wichuraiana	Rw7G040430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	693
AccII	CGCG	2 cut(s)	71, 597
AciI	CCGC	8 cut(s)	551, 581, 597, 728, 818, 879, 929, 932
AclI	AACGTT	1 cut(s)	197
AclWI	GGATC	9 cut(s)	237, 277, 286, 298, 412, 493, 649, 853, 892
AcsI	RAATTY	2 cut(s)	16, 826
AfaI	GTAC	4 cut(s)	23, 78, 587, 974
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgeI	ACCGGT	1 cut(s)	853
AgsI	TTSAA	5 cut(s)	44, 195, 236, 707, 869
AloI	GAACNNNNNNTCC	4 cut(s)	182, 214, 893, 925
AluBI	AGCT	7 cut(s)	8, 451, 560, 592, 703, 710, 1001
AluI	AGCT	7 cut(s)	8, 451, 560, 592, 703, 710, 1001
Alw26I	GTCTC	4 cut(s)	303, 530, 725, 938
AlwI	GGATC	9 cut(s)	237, 277, 286, 298, 412, 493, 649, 853, 892
AlwNI	CAGNNNCTG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	567
ApeKI	GCWGC	5 cut(s)	5, 8, 122, 560, 592
ApoI	RAATTY	2 cut(s)	16, 826
ArsI	GACNNNNNNTTYG	2 cut(s)	893, 925
AseI	ATTAAT	1 cut(s)	251
AsiGI	ACCGGT	1 cut(s)	853
AspLEI	GCGC	2 cut(s)	73, 597
AsuC2I	CCSGG	5 cut(s)	177, 188, 244, 610, 920
AsuHPI	GGTGA	4 cut(s)	68, 137, 677, 868
AsuII	TTCGAA	1 cut(s)	437
BbvI	GCAGC	4 cut(s)	17, 134, 547, 579
BccI	CCATC	1 cut(s)	315
BceAI	ACGGC	3 cut(s)	358, 564, 877
BciVI	GTATCC	1 cut(s)	975
BcnI	CCSGG	5 cut(s)	177, 188, 244, 610, 920
BcoDI	GTCTC	4 cut(s)	303, 530, 725, 938
BfaI	CTAG	1 cut(s)	998
BfmI	CTRYAG	1 cut(s)	120
BfuI	GTATCC	1 cut(s)	975
BglII	AGATCT	1 cut(s)	796
BisI	GCNGC	9 cut(s)	6, 9, 123, 561, 582, 593, 598, 929, 932
BlpI	GCTNAGC	1 cut(s)	699
BlsI	GCNGC	9 cut(s)	7, 10, 124, 562, 583, 594, 599, 930, 933
Bme1390I	CCNGG	5 cut(s)	177, 188, 244, 610, 920
BmiI	GGNNCC	1 cut(s)	927
BmrFI	CCNGG	5 cut(s)	177, 188, 244, 610, 920
BmrI	ACTGGG	1 cut(s)	487
BmsI	GCATC	1 cut(s)	337
BmuI	ACTGGG	1 cut(s)	487
BplI	GAGNNNNNCTC	2 cut(s)	935, 967
BpmI	CTGGAG	1 cut(s)	414
Bpu1102I	GCTNAGC	1 cut(s)	699
Bpu14I	TTCGAA	1 cut(s)	437
BpuMI	CCSGG	5 cut(s)	177, 188, 244, 610, 920
Bsa29I	ATCGAT	1 cut(s)	981
BsaJI	CCNNGG	1 cut(s)	175
BsaWI	WCCGGW	1 cut(s)	853
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse118I	RCCGGY	1 cut(s)	853
Bse1I	ACTGG	2 cut(s)	295, 482
BseCI	ATCGAT	1 cut(s)	981
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMII	CTCAG	6 cut(s)	293, 314, 376, 486, 702, 749
BseNI	ACTGG	2 cut(s)	295, 482
BseRI	GAGGAG	4 cut(s)	159, 676, 836, 938
BseXI	GCAGC	4 cut(s)	17, 134, 547, 579
Bsh1236I	CGCG	2 cut(s)	71, 597
Bsh1285I	CGRYCG	1 cut(s)	840
BshFI	GGCC	1 cut(s)	569
BshTI	ACCGGT	1 cut(s)	853
BshVI	ATCGAT	1 cut(s)	981
BsiEI	CGRYCG	1 cut(s)	840
BsiSI	CCGG	6 cut(s)	177, 188, 243, 610, 854, 920
BsiWI	CGTACG	1 cut(s)	972
BslFI	GGGAC	1 cut(s)	550
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	4 cut(s)	303, 530, 725, 938
BsmBI	CGTCTC	2 cut(s)	530, 938
BsmFI	GGGAC	1 cut(s)	550
BsnI	GGCC	1 cut(s)	569
Bsp119I	TTCGAA	1 cut(s)	437
Bsp1407I	TGTACA	1 cut(s)	21
Bsp1720I	GCTNAGC	1 cut(s)	699
BspACI	CCGC	8 cut(s)	551, 581, 597, 728, 818, 879, 929, 932
BspANI	GGCC	1 cut(s)	569
BspCNI	CTCAG	6 cut(s)	292, 313, 375, 487, 701, 748
BspDI	ATCGAT	1 cut(s)	981
BspFNI	CGCG	2 cut(s)	71, 597
BspLI	GGNNCC	1 cut(s)	927
BspMAI	CTGCAG	1 cut(s)	124
BspPI	GGATC	9 cut(s)	237, 277, 286, 298, 412, 493, 649, 853, 892
BspT104I	TTCGAA	1 cut(s)	437
BsrFI	RCCGGY	1 cut(s)	853
BsrGI	TGTACA	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	295, 482
BssAI	RCCGGY	1 cut(s)	853
BssECI	CCNNGG	1 cut(s)	175
Bst4CI	ACNGT	2 cut(s)	213, 422
Bst6I	CTCTTC	4 cut(s)	277, 321, 684, 864
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstAUI	TGTACA	1 cut(s)	21
BstBI	TTCGAA	1 cut(s)	437
BstDEI	CTNAG	8 cut(s)	279, 300, 362, 495, 688, 699, 735, 1002
BstF5I	GGATG	1 cut(s)	310
BstFNI	CGCG	2 cut(s)	71, 597
BstHHI	GCGC	2 cut(s)	73, 597
BstMAI	GTCTC	4 cut(s)	303, 530, 725, 938
BstMCI	CGRYCG	1 cut(s)	840
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 448, 557, 566
BstSCI	CCNGG	5 cut(s)	175, 186, 242, 608, 918
BstSFI	CTRYAG	1 cut(s)	120
BstUI	CGCG	2 cut(s)	71, 597
BstV1I	GCAGC	4 cut(s)	17, 134, 547, 579
Bsu15I	ATCGAT	1 cut(s)	981
BsuI	GTATCC	1 cut(s)	975
BsuRI	GGCC	1 cut(s)	569
BsuTUI	ATCGAT	1 cut(s)	981
BtsCI	GGATG	1 cut(s)	310
BtsI	GCAGTG	1 cut(s)	941
BtsIMutI	CAGTG	2 cut(s)	475, 941
CaiI	CAGNNNCTG	1 cut(s)	128
CfoI	GCGC	2 cut(s)	73, 597
Cfr10I	RCCGGY	1 cut(s)	853
ClaI	ATCGAT	1 cut(s)	981
CseI	GACGC	5 cut(s)	77, 114, 120, 334, 704
Csp6I	GTAC	4 cut(s)	22, 77, 586, 973
CspAI	ACCGGT	1 cut(s)	853
CviAII	CATG	2 cut(s)	64, 724
CviQI	GTAC	4 cut(s)	22, 77, 586, 973
DdeI	CTNAG	8 cut(s)	279, 300, 362, 495, 688, 699, 735, 1002
Eam1104I	CTCTTC	4 cut(s)	277, 321, 684, 864
EarI	CTCTTC	4 cut(s)	277, 321, 684, 864
EciI	GGCGGA	3 cut(s)	566, 743, 833
EcoRI	GAATTC	1 cut(s)	826
Esp3I	CGTCTC	2 cut(s)	530, 938
FaeI	CATG	2 cut(s)	67, 727
FaiI	YATR	7 cut(s)	14, 65, 220, 573, 636, 672, 725
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	2 cut(s)	63, 723
FblI	GTMKAC	1 cut(s)	693
Fnu4HI	GCNGC	9 cut(s)	6, 9, 123, 561, 582, 593, 598, 929, 932
FokI	GGATG	1 cut(s)	297
Fsp4HI	GCNGC	9 cut(s)	6, 9, 123, 561, 582, 593, 598, 929, 932
FspBI	CTAG	1 cut(s)	998
GlaI	GCGC	2 cut(s)	72, 596
GluI	GCNGC	9 cut(s)	6, 9, 123, 561, 582, 593, 598, 929, 932
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	1 cut(s)	569
HapII	CCGG	6 cut(s)	177, 188, 243, 610, 854, 920
HgaI	GACGC	5 cut(s)	77, 114, 120, 334, 704
HhaI	GCGC	2 cut(s)	73, 597
Hin1II	CATG	2 cut(s)	67, 727
Hin6I	GCGC	2 cut(s)	71, 595
HinP1I	GCGC	2 cut(s)	71, 595
HincII	GTYRAC	1 cut(s)	694
HindII	GTYRAC	1 cut(s)	694
HindIII	AAGCTT	2 cut(s)	449, 701
HpaII	CCGG	6 cut(s)	177, 188, 243, 610, 854, 920
HphI	GGTGA	4 cut(s)	68, 137, 677, 868
Hpy166II	GTNNAC	4 cut(s)	24, 59, 694, 876
Hpy188III	TCNNGA	4 cut(s)	44, 202, 352, 393
Hpy8I	GTNNAC	4 cut(s)	24, 59, 694, 876
Hpy99I	CGWCG	6 cut(s)	328, 448, 698, 757, 793, 973
HpyAV	CCTTC	4 cut(s)	117, 444, 775, 808
HpyCH4III	ACNGT	2 cut(s)	213, 422
HpyCH4IV	ACGT	6 cut(s)	197, 472, 631, 772, 908, 947
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 448, 557, 566
HpyF3I	CTNAG	8 cut(s)	279, 300, 362, 495, 688, 699, 735, 1002
HpySE526I	ACGT	6 cut(s)	197, 472, 631, 772, 908, 947
Hsp92II	CATG	2 cut(s)	67, 727
HspAI	GCGC	2 cut(s)	71, 595
LmnI	GCTCC	1 cut(s)	925
Lsp1109I	GCAGC	4 cut(s)	17, 134, 547, 579
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	1 cut(s)	998
MaeII	ACGT	6 cut(s)	197, 472, 631, 772, 908, 947
MaeIII	GTNAC	3 cut(s)	375, 473, 856
MluCI	AATT	2 cut(s)	16, 826
MlyI	GAGTC	6 cut(s)	41, 252, 405, 514, 727, 881
MmeI	TCCRAC	4 cut(s)	207, 347, 879, 936
MseI	TTAA	2 cut(s)	251, 615
MspA1I	CMGCKG	2 cut(s)	8, 881
MspI	CCGG	6 cut(s)	177, 188, 243, 610, 854, 920
MspR9I	CCNGG	5 cut(s)	177, 188, 244, 610, 920
MvnI	CGCG	2 cut(s)	71, 597
MwoI	GCNNNNNNNGC	4 cut(s)	128, 448, 557, 566
NciI	CCSGG	5 cut(s)	177, 188, 244, 610, 920
NlaIII	CATG	2 cut(s)	67, 727
NlaIV	GGNNCC	1 cut(s)	927
NmeAIII	GCCGAG	1 cut(s)	534
NmuCI	GTSAC	2 cut(s)	473, 856
NspV	TTCGAA	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	3 cut(s)	443, 761, 905
PfeI	GAWTC	5 cut(s)	101, 191, 355, 989, 994
Pfl23II	CGTACG	1 cut(s)	972
PinAI	ACCGGT	1 cut(s)	853
PkrI	GCNGC	9 cut(s)	7, 10, 124, 562, 583, 594, 599, 930, 933
Ple19I	CGATCG	1 cut(s)	840
PleI	GAGTC	6 cut(s)	41, 252, 404, 514, 727, 880
PpsI	GAGTC	6 cut(s)	41, 252, 404, 514, 727, 880
PshBI	ATTAAT	1 cut(s)	251
Psp1406I	AACGTT	1 cut(s)	197
PspLI	CGTACG	1 cut(s)	972
PspN4I	GGNNCC	1 cut(s)	927
PstI	CTGCAG	1 cut(s)	124
PstNI	CAGNNNCTG	1 cut(s)	128
PvuI	CGATCG	1 cut(s)	840
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	4 cut(s)	23, 78, 587, 974
RsaNI	GTAC	4 cut(s)	22, 77, 586, 973
SalI	GTCGAC	1 cut(s)	692
SaqAI	TTAA	2 cut(s)	251, 615
SatI	GCNGC	9 cut(s)	6, 9, 123, 561, 582, 593, 598, 929, 932
SchI	GAGTC	6 cut(s)	41, 252, 405, 514, 727, 881
ScrFI	CCNGG	5 cut(s)	177, 188, 244, 610, 920
SfaNI	GCATC	1 cut(s)	337
SfcI	CTRYAG	1 cut(s)	120
SfuI	TTCGAA	1 cut(s)	437
SgrAI	CRCCGGYG	1 cut(s)	853
Sse9I	AATT	2 cut(s)	16, 826
SsiI	CCGC	8 cut(s)	551, 581, 597, 728, 818, 879, 929, 932
SspMI	CTAG	1 cut(s)	998
StyD4I	CCNGG	5 cut(s)	175, 186, 242, 608, 918
TaaI	ACNGT	2 cut(s)	213, 422
TaiI	ACGT	6 cut(s)	200, 475, 634, 775, 911, 950
TaqI	TCGA	8 cut(s)	353, 437, 693, 752, 764, 836, 981, 992
TasI	AATT	2 cut(s)	16, 826
TatI	WGTACW	1 cut(s)	21
TauI	GCSGC	4 cut(s)	584, 600, 931, 934
TfiI	GAWTC	5 cut(s)	101, 191, 355, 989, 994
Tru1I	TTAA	2 cut(s)	251, 615
Tru9I	TTAA	2 cut(s)	251, 615
TscAI	CASTG	2 cut(s)	482, 941
TseFI	GTSAC	2 cut(s)	473, 856
TseI	GCWGC	5 cut(s)	5, 8, 122, 560, 592
Tsp45I	GTSAC	2 cut(s)	473, 856
TspDTI	ATGAA	3 cut(s)	29, 207, 398
TspGWI	ACGGA	4 cut(s)	491, 654, 875, 957
TspRI	CASTG	2 cut(s)	482, 941
VspI	ATTAAT	1 cut(s)	251
XapI	RAATTY	2 cut(s)	16, 826
XmiI	GTMKAC	1 cut(s)	693
XspI	CTAG	1 cut(s)	998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.