Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013977

Physical Location & Seq

Genomic Coordinates Forward (+)

3291187 .. 3292326

Gene Structure 1140 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00220810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCAGCTATGGATATCTACAGTAGCAGACCTCTTCAGTCATCTTCGGATCCTTTTACGGGTGAGCTCATGGAAGCACTTGAACCTTTTATGAAAAGTGCGTCTCCACCGCCGCCTTGTTCTTCTTATTCTCCTTCTTCTTTTGATTTCAACCCTTCTATCCCAACCCCATCTTCTTCTTATTCTTCTTCTTCAACCCCTTTCCTTTCTTCTACTCCTTCTCCTTCTTCTTCCTACAACTACCTGTCTTTCTCCCCTTCGATCCCTACCTCGCAGCCCAATTTGTACCAAGACGGTGGCTCAACCTTTCCCATGGGTTTCGAGCAGCAAGGTTCGATTGGGCTGAACCACCTTACCCCTTCCCAGATCCACCAGATCCAGGCCGAGATCCAGCTCCAGAATCAGCCCCAGATGATGGCATGGCAGCAAAACTATCAGCAACAGTCATCACCATCCCACACGCTCAGCTTTCTCAGTCCCAAACCTGTTCCCATGAAGCAATCTGGTTCGCCGCCCAAGCCCACCAAGCTTTACCGGGGAGTGAGGCAGAGGCATTGGGGGAAATGGGTCGCCGAGATCCGGCTACCCAAGAACCGAACCCGCCTCTGGCTTGGCACTTTCGACACAGCTGAAGAAGCAGCCTTGGCTTATGACAAAGCAGCTTACAAGCTCCGTGGTGATTTTGCCCGCCTCAATTTCCCTCATTTGAAGCACACCGGCTCAGTTGTTGGTGGCGAGTTCGGCGAGTACAAGCCTCTGCATTCCTCTGTTGACGCGAAGCTTCAGGCCATCTGCGAAGGCTTGGCTGAGTCGCAGAAGCAGGGGAAGGCAGGGAAGCAGGCGGGTGCGGCCAAGAAATCATCGGCCGCCCGCTCGCAGCAGAAGCCGAAGTCAACACCGGTGCCGGAACCAGAACCGGAACCGGAGGCTTTGACGGTGAAGATGGAGAGCTCCTCCTTGTCGCCGGTGATGACGGATAGTGATGGGTCTGCAGGGTCTTCTCCTCTATCAGATCTGACCTTTGCCGACTGCTCAGAGTCCTCATCGCCCTGGGAGAACTGCGGAACGGAGAGTTACACGTTGGAGAAGTATCCATCAGAGATTGATTGGGCTTCGATCTTCAATCAAAATTCGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033554 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045595 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071369 GO:0071470 GO:0071472 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

379

Amino Acids

41.27

Weight (kDa)

6.01

Isoelectric Point (pI)

69.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	177 - 226	5.6e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78080
fragaria_vesca	FvH4_5g37820
malus_domestica	MD08G1180200.v1.1 MD15G1365500.v1.1
prunus_persica	Prupe.1G513600_v2.0.a1 Prupe.3G009400_v2.0.a1
pyrus_communis	pycom08g15420 pycom15g32790
rosa_chinensis	RchiOBHm_Chr7g0239701
rosa_laevigata	RLG00000000738
rosa_multiflora	Rmu_sc0000063.1_g000026
rosa_roxburghii	Rroxscaffold_3G00220810
rosa_samantha	Rh7AG483000 Rh7BG455900 Rh7CG500600 Rh7DG468800
rosa_wichuraiana	Rw7G040430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	901
AccB7I	CCANNNNNTGG	1 cut(s)	415
AccBSI	CCGCTC	1 cut(s)	873
AccII	CGCG	1 cut(s)	776
AclWI	GGATC	7 cut(s)	44, 57, 256, 361, 370, 382, 571
AcoI	YGGCCR	2 cut(s)	849, 864
AcsI	RAATTY	1 cut(s)	1129
AcuI	CTGAAG	3 cut(s)	20, 651, 767
AfaI	GTAC	2 cut(s)	287, 749
AfiI	CCNNNNNNNGG	5 cut(s)	59, 379, 415, 579, 606
AflIII	ACRYGT	1 cut(s)	1077
AgeI	ACCGGT	1 cut(s)	898
AgsI	TTSAA	5 cut(s)	83, 151, 195, 709, 1123
AjnI	CCWGG	2 cut(s)	378, 1049
AjuI	GAANNNNNNNTTGG	2 cut(s)	157, 189
Alw21I	GWGCWC	2 cut(s)	69, 953
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	7 cut(s)	44, 57, 256, 361, 370, 382, 571
AoxI	GGCC	4 cut(s)	381, 786, 849, 864
ApeKI	GCWGC	7 cut(s)	5, 274, 325, 424, 638, 659, 877
ApoI	RAATTY	1 cut(s)	1129
AsiGI	ACCGGT	1 cut(s)	898
AsuC2I	CCSGG	1 cut(s)	536
AsuHPI	GGTGA	5 cut(s)	74, 441, 689, 949, 979
AsuII	TTCGAA	1 cut(s)	1133
BamHI	GGATCC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	901
BanII	GRGCYC	2 cut(s)	69, 953
BbsI	GAAGAC	1 cut(s)	990
Bbv12I	GWGCWC	2 cut(s)	69, 953
BbvI	GCAGC	7 cut(s)	17, 286, 337, 436, 650, 671, 889
BccI	CCATC	7 cut(s)	178, 409, 460, 797, 937, 977, 1102
BciT130I	CCWGG	2 cut(s)	380, 1051
BciVI	GTATCC	1 cut(s)	1101
BcnI	CCSGG	1 cut(s)	536
BcoDI	GTCTC	1 cut(s)	108
BfmI	CTRYAG	2 cut(s)	19, 990
BfuI	GTATCC	1 cut(s)	1101
BglII	AGATCT	1 cut(s)	1012
BlpI	GCTNAGC	1 cut(s)	464
Bme1390I	CCNGG	3 cut(s)	380, 536, 1051
BmiI	GGNNCC	4 cut(s)	51, 903, 909, 921
BmrFI	CCNGG	3 cut(s)	380, 536, 1051
BpiI	GAAGAC	1 cut(s)	990
BplI	GAGNNNNNCTC	2 cut(s)	938, 970
BpmI	CTGGAG	1 cut(s)	380
Bpu1102I	GCTNAGC	1 cut(s)	464
Bpu14I	TTCGAA	1 cut(s)	1133
BpuMI	CCSGG	1 cut(s)	536
BsaJI	CCNNGG	6 cut(s)	312, 535, 642, 673, 1049, 1050
BsaWI	WCCGGW	3 cut(s)	898, 916, 922
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	5 cut(s)	59, 379, 415, 579, 606
Bse118I	RCCGGY	3 cut(s)	716, 898, 964
BseBI	CCWGG	2 cut(s)	380, 1051
BseDI	CCNNGG	6 cut(s)	312, 535, 642, 673, 1049, 1050
BseGI	GGATG	1 cut(s)	452
BseLI	CCNNNNNNNGG	5 cut(s)	59, 379, 415, 579, 606
BseMII	CTCAG	5 cut(s)	478, 487, 735, 798, 1047
BseRI	GAGGAG	2 cut(s)	943, 993
BseX3I	CGGCCG	1 cut(s)	864
BseXI	GCAGC	7 cut(s)	17, 286, 337, 436, 650, 671, 889
Bsh1236I	CGCG	1 cut(s)	776
Bsh1285I	CGRYCG	1 cut(s)	867
BshFI	GGCC	4 cut(s)	383, 788, 851, 866
BshNI	GGYRCC	1 cut(s)	901
BshTI	ACCGGT	1 cut(s)	898
BsiEI	CGRYCG	1 cut(s)	867
BsiHKAI	GWGCWC	2 cut(s)	69, 953
BsiSI	CCGG	8 cut(s)	535, 580, 717, 899, 905, 917, 923, 965
BslFI	GGGAC	1 cut(s)	462
BslI	CCNNNNNNNGG	5 cut(s)	59, 379, 415, 579, 606
BsmAI	GTCTC	1 cut(s)	108
BsmBI	CGTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	462
BsmI	GAATGC	1 cut(s)	760
BsnI	GGCC	4 cut(s)	383, 788, 851, 866
Bsp119I	TTCGAA	1 cut(s)	1133
Bsp1286I	GDGCHC	2 cut(s)	69, 953
Bsp143I	GATC	8 cut(s)	49, 261, 366, 375, 387, 576, 1012, 1116
Bsp1720I	GCTNAGC	1 cut(s)	464
Bsp19I	CCATGG	1 cut(s)	312
BspANI	GGCC	4 cut(s)	383, 788, 851, 866
BspCNI	CTCAG	5 cut(s)	477, 486, 734, 799, 1046
BspFNI	CGCG	1 cut(s)	776
BspLI	GGNNCC	4 cut(s)	51, 903, 909, 921
BspMAI	CTGCAG	1 cut(s)	994
BspPI	GGATC	7 cut(s)	44, 57, 256, 361, 370, 382, 571
BspT104I	TTCGAA	1 cut(s)	1133
BspT107I	GGYRCC	1 cut(s)	901
BsrBI	CCGCTC	1 cut(s)	873
BsrFI	RCCGGY	3 cut(s)	716, 898, 964
BssAI	RCCGGY	3 cut(s)	716, 898, 964
BssECI	CCNNGG	6 cut(s)	312, 535, 642, 673, 1049, 1050
BssMI	GATC	8 cut(s)	49, 261, 366, 375, 387, 576, 1012, 1116
BssT1I	CCWWGG	2 cut(s)	312, 642
Bst2UI	CCWGG	2 cut(s)	380, 1051
Bst4CI	ACNGT	4 cut(s)	23, 296, 444, 937
Bst6I	CTCTTC	1 cut(s)	39
BstBI	TTCGAA	1 cut(s)	1133
BstC8I	GCNNGC	4 cut(s)	688, 840, 871, 875
BstDEI	CTNAG	5 cut(s)	464, 473, 721, 807, 1033
BstDSI	CCRYGG	2 cut(s)	312, 673
BstF5I	GGATG	1 cut(s)	452
BstFNI	CGCG	1 cut(s)	776
BstKTI	GATC	8 cut(s)	52, 264, 369, 378, 390, 579, 1015, 1119
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	8 cut(s)	49, 261, 366, 375, 387, 576, 1012, 1116
BstMCI	CGRYCG	1 cut(s)	867
BstMWI	GCNNNNNNNGC	7 cut(s)	517, 526, 635, 644, 741, 848, 883
BstNI	CCWGG	2 cut(s)	380, 1051
BstSCI	CCNGG	3 cut(s)	378, 534, 1049
BstSFI	CTRYAG	2 cut(s)	19, 990
BstUI	CGCG	1 cut(s)	776
BstV1I	GCAGC	7 cut(s)	17, 286, 337, 436, 650, 671, 889
BstV2I	GAAGAC	1 cut(s)	990
BstX2I	RGATCY	6 cut(s)	49, 366, 375, 387, 576, 1012
BstXI	CCANNNNNNTGG	1 cut(s)	296
BstYI	RGATCY	6 cut(s)	49, 366, 375, 387, 576, 1012
BstZI	CGGCCG	1 cut(s)	864
BsuI	GTATCC	1 cut(s)	1101
BsuRI	GGCC	4 cut(s)	383, 788, 851, 866
BtgI	CCRYGG	2 cut(s)	312, 673
BtgZI	GCGATG	1 cut(s)	1029
BtsCI	GGATG	1 cut(s)	452
Cac8I	GCNNGC	4 cut(s)	688, 840, 871, 875
Cfr10I	RCCGGY	3 cut(s)	716, 898, 964
CseI	GACGC	2 cut(s)	90, 782
Csp6I	GTAC	2 cut(s)	286, 748
CspAI	ACCGGT	1 cut(s)	898
CspCI	CAANNNNNGTGG	2 cut(s)	655, 690
CviAII	CATG	4 cut(s)	70, 313, 420, 493
CviQI	GTAC	2 cut(s)	286, 748
DdeI	CTNAG	5 cut(s)	464, 473, 721, 807, 1033
DpnI	GATC	8 cut(s)	51, 263, 368, 377, 389, 578, 1014, 1118
DpnII	GATC	8 cut(s)	49, 261, 366, 375, 387, 576, 1012, 1116
EaeI	YGGCCR	2 cut(s)	849, 864
EagI	CGGCCG	1 cut(s)	864
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	2 cut(s)	67, 951
EclXI	CGGCCG	1 cut(s)	864
Eco130I	CCWWGG	2 cut(s)	312, 642
Eco24I	GRGCYC	2 cut(s)	69, 953
Eco32I	GATATC	1 cut(s)	16
Eco52I	CGGCCG	1 cut(s)	864
Eco53kI	GAGCTC	2 cut(s)	67, 951
Eco57I	CTGAAG	3 cut(s)	20, 651, 767
EcoICRI	GAGCTC	2 cut(s)	67, 951
EcoRII	CCWGG	2 cut(s)	378, 1049
EcoRV	GATATC	1 cut(s)	16
EcoT14I	CCWWGG	2 cut(s)	312, 642
EcoT38I	GRGCYC	2 cut(s)	69, 953
ErhI	CCWWGG	2 cut(s)	312, 642
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	4 cut(s)	73, 316, 423, 496
FaiI	YATR	7 cut(s)	11, 71, 92, 314, 421, 494, 651
FaqI	GGGAC	1 cut(s)	462
FatI	CATG	4 cut(s)	69, 312, 419, 492
FauI	CCCGC	4 cut(s)	608, 695, 835, 878
FokI	GGATG	1 cut(s)	439
FriOI	GRGCYC	2 cut(s)	69, 953
GsuI	CTGGAG	1 cut(s)	380
HaeIII	GGCC	4 cut(s)	383, 788, 851, 866
HapII	CCGG	8 cut(s)	535, 580, 717, 899, 905, 917, 923, 965
HgaI	GACGC	2 cut(s)	90, 782
Hin1II	CATG	4 cut(s)	73, 316, 423, 496
HincII	GTYRAC	2 cut(s)	772, 894
HindII	GTYRAC	2 cut(s)	772, 894
HindIII	AAGCTT	2 cut(s)	527, 779
HinfI	GANTC	3 cut(s)	400, 809, 1037
HpaII	CCGG	8 cut(s)	535, 580, 717, 899, 905, 917, 923, 965
HphI	GGTGA	5 cut(s)	74, 441, 689, 949, 979
Hpy166II	GTNNAC	2 cut(s)	772, 894
Hpy188I	TCNGA	5 cut(s)	49, 1012, 1017, 1036, 1099
Hpy188III	TCNNGA	1 cut(s)	397
Hpy8I	GTNNAC	2 cut(s)	772, 894
HpyAV	CCTTC	8 cut(s)	144, 165, 228, 234, 267, 369, 791, 820
HpyCH4III	ACNGT	4 cut(s)	23, 296, 444, 937
HpyCH4IV	ACGT	1 cut(s)	1079
HpyCH4V	TGCA	2 cut(s)	760, 992
HpyF10VI	GCNNNNNNNGC	7 cut(s)	517, 526, 635, 644, 741, 848, 883
HpyF3I	CTNAG	5 cut(s)	464, 473, 721, 807, 1033
HpySE526I	ACGT	1 cut(s)	1079
Hsp92II	CATG	4 cut(s)	73, 316, 423, 496
Kzo9I	GATC	8 cut(s)	49, 261, 366, 375, 387, 576, 1012, 1116
LmnI	GCTCC	3 cut(s)	399, 675, 956
Lsp1109I	GCAGC	7 cut(s)	17, 286, 337, 436, 650, 671, 889
MaeII	ACGT	1 cut(s)	1079
MaeIII	GTNAC	1 cut(s)	1073
MalI	GATC	8 cut(s)	51, 263, 368, 377, 389, 578, 1014, 1118
MbiI	CCGCTC	1 cut(s)	873
MboI	GATC	8 cut(s)	49, 261, 366, 375, 387, 576, 1012, 1116
MflI	RGATCY	6 cut(s)	49, 366, 375, 387, 576, 1012
MhlI	GDGCHC	2 cut(s)	69, 953
MluCI	AATT	4 cut(s)	280, 694, 1129, 1135
MlyI	GAGTC	2 cut(s)	818, 1046
MmeI	TCCRAC	1 cut(s)	1062
MseI	TTAA	1 cut(s)	1138
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	8 cut(s)	535, 580, 717, 899, 905, 917, 923, 965
MspR9I	CCNGG	3 cut(s)	380, 536, 1051
Mva1269I	GAATGC	1 cut(s)	760
MvaI	CCWGG	2 cut(s)	380, 1051
MvnI	CGCG	1 cut(s)	776
MwoI	GCNNNNNNNGC	7 cut(s)	517, 526, 635, 644, 741, 848, 883
NciI	CCSGG	1 cut(s)	536
NcoI	CCATGG	1 cut(s)	312
NdeII	GATC	8 cut(s)	49, 261, 366, 375, 387, 576, 1012, 1116
NlaIII	CATG	4 cut(s)	73, 316, 423, 496
NlaIV	GGNNCC	4 cut(s)	51, 903, 909, 921
NmeAIII	GCCGAG	2 cut(s)	409, 598
NspV	TTCGAA	1 cut(s)	1133
PasI	CCCWGGG	1 cut(s)	1050
PctI	GAATGC	1 cut(s)	760
PfeI	GAWTC	1 cut(s)	400
PflMI	CCANNNNNTGG	1 cut(s)	415
PinAI	ACCGGT	1 cut(s)	898
PleI	GAGTC	2 cut(s)	817, 1045
PpsI	GAGTC	2 cut(s)	817, 1045
Psp124BI	GAGCTC	2 cut(s)	69, 953
Psp6I	CCWGG	2 cut(s)	378, 1049
PspGI	CCWGG	2 cut(s)	378, 1049
PspN4I	GGNNCC	4 cut(s)	51, 903, 909, 921
PstI	CTGCAG	1 cut(s)	994
PsuI	RGATCY	6 cut(s)	49, 366, 375, 387, 576, 1012
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	2 cut(s)	287, 749
RsaNI	GTAC	2 cut(s)	286, 748
SacI	GAGCTC	2 cut(s)	69, 953
SaqAI	TTAA	1 cut(s)	1138
Sau3AI	GATC	8 cut(s)	49, 261, 366, 375, 387, 576, 1012, 1116
SchI	GAGTC	2 cut(s)	818, 1046
ScrFI	CCNGG	3 cut(s)	380, 536, 1051
SduI	GDGCHC	2 cut(s)	69, 953
SfcI	CTRYAG	2 cut(s)	19, 990
SfuI	TTCGAA	1 cut(s)	1133
SgrAI	CRCCGGYG	2 cut(s)	898, 964
Sse9I	AATT	4 cut(s)	280, 694, 1129, 1135
SstI	GAGCTC	2 cut(s)	69, 953
StyD4I	CCNGG	3 cut(s)	378, 534, 1049
StyI	CCWWGG	2 cut(s)	312, 642
TaaI	ACNGT	4 cut(s)	23, 296, 444, 937
TaiI	ACGT	1 cut(s)	1082
TaqI	TCGA	6 cut(s)	260, 321, 335, 621, 1115, 1133
TasI	AATT	4 cut(s)	280, 694, 1129, 1135
TatI	WGTACW	1 cut(s)	747
TauI	GCSGC	4 cut(s)	115, 514, 851, 869
TfiI	GAWTC	1 cut(s)	400
Tru1I	TTAA	1 cut(s)	1138
Tru9I	TTAA	1 cut(s)	1138
TseI	GCWGC	7 cut(s)	5, 274, 325, 424, 638, 659, 877
TspDTI	ATGAA	2 cut(s)	107, 509
TspGWI	ACGGA	3 cut(s)	662, 989, 1082
Van91I	CCANNNNNTGG	1 cut(s)	415
XapI	RAATTY	1 cut(s)	1129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.