Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0013977

Physical Location & Seq

Genomic Coordinates Reverse (-)

27851089 .. 27852207

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g37820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCAGCTATGGATTTCTACAGTAGCATACCTCTTCAGTCATCTTCCGATCCTTTCACCGGTGAGCTCATGGAAGCACTTGAACCTTTTATGAAAAGTGCATCTCCACCGCCACCTCTATCTTCTTCTTCTTTTGATTTCAACCCTTCTATCCCAACCCCATCTTCTTCTTATTCTTCTTCTCCCACCCCTTTTCTTCCTTCTACTTCTTCTCCTTCTTCTTCCTACGACTACCTCTCTTTCTCTCCTTCCATCCCTACTCCTCAGCCCGGTTTGTTCCAAGACGGTTGCTCAACCTTTAACATGGGTTTCGAGCAGCAAGGTTCGATCGGGCTGAACCACCTTACTTCTTCCCAGATCCACCAGATCCAGACTCAGTTCCAGTTCCAGAATCAACCCCAGATGGCGTGGCAACAGAGTTATCAACAGCCGCAACCGTCTCATACTCTCAGCTTTCTCAGTCCCAAACCTGTTCCGATGAAGCAGTCTGGTTCCCCGCCCAAGCCCACCAAGCTTTACCGGGGAGTGAGGCAGAGGCACTGGGGGAAATGGGTGGCCGAGATCCGCCTACCCAAGAACCGTACCCGCCTCTGGCTTGGAACTTTCGACACAGCTGAAGAAGCAGCCTTGGCTTACGACAAAGCAGCTTACAAGCTCCGTGGTGACTTTGCCCGCCTCAATTTTCCACATTTGAAGCACACTGGGTCCGTCGTTGGTGGAGAGTTCGGCGAGTACAAGCCTCTGCATTCCTCTGTTGACGCGAAGCTTCAGGCCATTTGCGAAGGCTTGGCTGAGTCGCAGAAACAGGGGAAGGCAGGGAAGCAGGCGGGTGGGGCCAAGAAATCTTCGGCCGCCCGCACGAAGCCGAAATCAACACCAGTGCCGGAACCGGAACCAGAACCGGAGGCTTTGACCGTGAAGGAGGAGACCTCCTCCTTGTCGCCGGTGAGGACGGATAGTGATGGGTCTGCAGGGTCTTCTCCTCTATCGGATCTGACCTTTGCCGACTACTCAGAGTCCTCATCGCCTTGGGAGAACAACGGATCAGAGAGTTACCTGTTGGAGAAGTATCCATCAGAGATTGATTGGGCTTCGATCTTCAATCAAAATTCGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033554 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045595 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071369 GO:0071470 GO:0071472 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

373

Amino Acids

40.64

Weight (kDa)

5.85

Isoelectric Point (pI)

64.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	172 - 221	5.4e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78080
fragaria_vesca	FvH4_5g37820
malus_domestica	MD08G1180200.v1.1 MD15G1365500.v1.1
prunus_persica	Prupe.1G513600_v2.0.a1 Prupe.3G009400_v2.0.a1
pyrus_communis	pycom08g15420 pycom15g32790
rosa_chinensis	RchiOBHm_Chr7g0239701
rosa_laevigata	RLG00000000738
rosa_multiflora	Rmu_sc0000063.1_g000026
rosa_roxburghii	Rroxscaffold_3G00220810
rosa_samantha	Rh7AG483000 Rh7BG455900 Rh7CG500600 Rh7DG468800
rosa_wichuraiana	Rw7G040430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	761
AciI	CCGC	9 cut(s)	110, 431, 497, 565, 586, 673, 827, 852, 856
AclWI	GGATC	6 cut(s)	44, 352, 361, 556, 999, 1051
AcoI	YGGCCR	2 cut(s)	555, 849
AcsI	RAATTY	1 cut(s)	1108
AcuI	CTGAAG	3 cut(s)	20, 636, 752
AfaI	GTAC	2 cut(s)	583, 734
AfiI	CCNNNNNNNGG	3 cut(s)	59, 269, 591
AgeI	ACCGGT	1 cut(s)	59
AgsI	TTSAA	4 cut(s)	83, 142, 694, 1102
AjuI	GAANNNNNNNTTGG	2 cut(s)	148, 180
AluBI	AGCT	8 cut(s)	8, 67, 453, 514, 614, 647, 655, 766
AluI	AGCT	8 cut(s)	8, 67, 453, 514, 614, 647, 655, 766
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	2 cut(s)	444, 920
AlwI	GGATC	6 cut(s)	44, 352, 361, 556, 999, 1051
AoxI	GGCC	4 cut(s)	555, 771, 834, 849
ApeKI	GCWGC	4 cut(s)	5, 316, 623, 644
ApoI	RAATTY	1 cut(s)	1108
AsiGI	ACCGGT	1 cut(s)	59
AspS9I	GGNCC	2 cut(s)	705, 834
AsuC2I	CCSGG	2 cut(s)	270, 521
AsuHPI	GGTGA	4 cut(s)	49, 74, 674, 958
AsuII	TTCGAA	1 cut(s)	1112
AvaII	GGWCC	1 cut(s)	705
BanII	GRGCYC	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	969
Bbv12I	GWGCWC	1 cut(s)	69
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	4 cut(s)	17, 328, 635, 656
BccI	CCATC	5 cut(s)	169, 260, 397, 956, 1081
BciVI	GTATCC	1 cut(s)	1080
BcnI	CCSGG	2 cut(s)	270, 521
BcoDI	GTCTC	2 cut(s)	444, 920
BfmI	CTRYAG	2 cut(s)	19, 969
BfuI	GTATCC	1 cut(s)	1080
BisI	GCNGC	6 cut(s)	6, 317, 431, 624, 645, 852
BlsI	GCNGC	6 cut(s)	7, 318, 432, 625, 646, 853
Bme1390I	CCNGG	2 cut(s)	270, 521
Bme18I	GGWCC	1 cut(s)	705
BmgT120I	GGNCC	2 cut(s)	705, 834
BmiI	GGNNCC	5 cut(s)	493, 706, 835, 888, 894
BmrFI	CCNGG	2 cut(s)	270, 521
BmrI	ACTGGG	2 cut(s)	550, 711
BmsI	GCATC	1 cut(s)	110
BmuI	ACTGGG	2 cut(s)	550, 711
BpiI	GAAGAC	1 cut(s)	969
BplI	GAGNNNNNCTC	4 cut(s)	914, 946, 917, 949
Bpu10I	CCTNAGC	1 cut(s)	264
Bpu14I	TTCGAA	1 cut(s)	1112
BpuMI	CCSGG	2 cut(s)	270, 521
BsaI	GGTCTC	1 cut(s)	920
BsaJI	CCNNGG	4 cut(s)	520, 627, 658, 1028
BsaWI	WCCGGW	3 cut(s)	59, 889, 901
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 269, 591
Bse118I	RCCGGY	2 cut(s)	59, 943
Bse1I	ACTGG	4 cut(s)	382, 545, 706, 878
BseDI	CCNNGG	4 cut(s)	520, 627, 658, 1028
BseGI	GGATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	3 cut(s)	59, 269, 591
BseMII	CTCAG	6 cut(s)	278, 389, 463, 472, 783, 1026
BseNI	ACTGG	4 cut(s)	382, 545, 706, 878
BseRI	GAGGAG	4 cut(s)	252, 922, 938, 972
BseX3I	CGGCCG	1 cut(s)	849
BseXI	GCAGC	4 cut(s)	17, 328, 635, 656
Bsh1236I	CGCG	1 cut(s)	761
Bsh1285I	CGRYCG	2 cut(s)	330, 852
BshFI	GGCC	4 cut(s)	557, 773, 836, 851
BshTI	ACCGGT	1 cut(s)	59
BsiEI	CGRYCG	2 cut(s)	330, 852
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	7 cut(s)	60, 270, 520, 884, 890, 902, 944
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	3 cut(s)	59, 269, 591
BsmAI	GTCTC	2 cut(s)	444, 920
BsmBI	CGTCTC	1 cut(s)	444
BsmFI	GGGAC	1 cut(s)	447
BsmI	GAATGC	1 cut(s)	745
BsnI	GGCC	4 cut(s)	557, 773, 836, 851
Bso31I	GGTCTC	1 cut(s)	920
Bsp119I	TTCGAA	1 cut(s)	1112
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	8 cut(s)	49, 327, 357, 366, 561, 991, 1043, 1095
BspACI	CCGC	9 cut(s)	110, 431, 497, 565, 586, 673, 827, 852, 856
BspANI	GGCC	4 cut(s)	557, 773, 836, 851
BspCNI	CTCAG	6 cut(s)	277, 388, 462, 471, 784, 1025
BspFNI	CGCG	1 cut(s)	761
BspLI	GGNNCC	5 cut(s)	493, 706, 835, 888, 894
BspMAI	CTGCAG	1 cut(s)	973
BspPI	GGATC	6 cut(s)	44, 352, 361, 556, 999, 1051
BspT104I	TTCGAA	1 cut(s)	1112
BspTNI	GGTCTC	1 cut(s)	920
BsrFI	RCCGGY	2 cut(s)	59, 943
BsrI	ACTGG	4 cut(s)	382, 545, 706, 878
BssAI	RCCGGY	2 cut(s)	59, 943
BssECI	CCNNGG	4 cut(s)	520, 627, 658, 1028
BssMI	GATC	8 cut(s)	49, 327, 357, 366, 561, 991, 1043, 1095
BssT1I	CCWWGG	2 cut(s)	627, 1028
Bst4CI	ACNGT	5 cut(s)	23, 287, 438, 581, 916
Bst6I	CTCTTC	1 cut(s)	39
BstBI	TTCGAA	1 cut(s)	1112
BstC8I	GCNNGC	3 cut(s)	673, 825, 856
BstDEI	CTNAG	6 cut(s)	264, 375, 449, 458, 792, 1012
BstDSI	CCRYGG	1 cut(s)	658
BstF5I	GGATG	1 cut(s)	252
BstFNI	CGCG	1 cut(s)	761
BstKTI	GATC	8 cut(s)	52, 330, 360, 369, 564, 994, 1046, 1098
BstMAI	GTCTC	2 cut(s)	444, 920
BstMBI	GATC	8 cut(s)	49, 327, 357, 366, 561, 991, 1043, 1095
BstMCI	CGRYCG	2 cut(s)	330, 852
BstMWI	GCNNNNNNNGC	4 cut(s)	511, 620, 629, 833
BstSCI	CCNGG	2 cut(s)	268, 519
BstSFI	CTRYAG	2 cut(s)	19, 969
BstUI	CGCG	1 cut(s)	761
BstV1I	GCAGC	4 cut(s)	17, 328, 635, 656
BstV2I	GAAGAC	1 cut(s)	969
BstX2I	RGATCY	4 cut(s)	357, 366, 561, 991
BstYI	RGATCY	4 cut(s)	357, 366, 561, 991
BstZI	CGGCCG	1 cut(s)	849
BsuI	GTATCC	1 cut(s)	1080
BsuRI	GGCC	4 cut(s)	557, 773, 836, 851
BtgI	CCRYGG	1 cut(s)	658
BtgZI	GCGATG	1 cut(s)	1008
BtsCI	GGATG	1 cut(s)	252
BtsIMutI	CAGTG	3 cut(s)	538, 699, 885
Cac8I	GCNNGC	3 cut(s)	673, 825, 856
Cfr10I	RCCGGY	2 cut(s)	59, 943
Cfr13I	GGNCC	2 cut(s)	705, 834
CseI	GACGC	1 cut(s)	767
Csp6I	GTAC	2 cut(s)	582, 733
CspAI	ACCGGT	1 cut(s)	59
CspCI	CAANNNNNGTGG	2 cut(s)	640, 675
CviAII	CATG	2 cut(s)	70, 304
CviQI	GTAC	2 cut(s)	582, 733
DdeI	CTNAG	6 cut(s)	264, 375, 449, 458, 792, 1012
DpnI	GATC	8 cut(s)	51, 329, 359, 368, 563, 993, 1045, 1097
DpnII	GATC	8 cut(s)	49, 327, 357, 366, 561, 991, 1043, 1095
EaeI	YGGCCR	2 cut(s)	555, 849
EagI	CGGCCG	1 cut(s)	849
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	554
Ecl136II	GAGCTC	1 cut(s)	67
EclXI	CGGCCG	1 cut(s)	849
Eco130I	CCWWGG	2 cut(s)	627, 1028
Eco24I	GRGCYC	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	920
Eco47I	GGWCC	1 cut(s)	705
Eco52I	CGGCCG	1 cut(s)	849
Eco53kI	GAGCTC	1 cut(s)	67
Eco57I	CTGAAG	3 cut(s)	20, 636, 752
EcoICRI	GAGCTC	1 cut(s)	67
EcoT14I	CCWWGG	2 cut(s)	627, 1028
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	2 cut(s)	627, 1028
Esp3I	CGTCTC	1 cut(s)	444
FaeI	CATG	2 cut(s)	73, 307
FaiI	YATR	6 cut(s)	11, 29, 71, 92, 305, 444
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	2 cut(s)	69, 303
FauI	CCCGC	5 cut(s)	504, 593, 680, 820, 863
Fnu4HI	GCNGC	6 cut(s)	6, 317, 431, 624, 645, 852
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	6 cut(s)	6, 317, 431, 624, 645, 852
GluI	GCNGC	6 cut(s)	6, 317, 431, 624, 645, 852
HaeIII	GGCC	4 cut(s)	557, 773, 836, 851
HapII	CCGG	7 cut(s)	60, 270, 520, 884, 890, 902, 944
HgaI	GACGC	1 cut(s)	767
Hin1II	CATG	2 cut(s)	73, 307
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HindIII	AAGCTT	2 cut(s)	512, 764
HinfI	GANTC	4 cut(s)	373, 391, 794, 1016
HpaII	CCGG	7 cut(s)	60, 270, 520, 884, 890, 902, 944
HphI	GGTGA	4 cut(s)	49, 74, 674, 958
Hpy166II	GTNNAC	1 cut(s)	757
Hpy188I	TCNGA	7 cut(s)	49, 477, 991, 996, 1015, 1048, 1078
Hpy188III	TCNNGA	2 cut(s)	370, 388
Hpy8I	GTNNAC	1 cut(s)	757
Hpy99I	CGWCG	1 cut(s)	713
HpyAV	CCTTC	7 cut(s)	156, 210, 225, 258, 776, 805, 913
HpyCH4III	ACNGT	5 cut(s)	23, 287, 438, 581, 916
HpyCH4V	TGCA	3 cut(s)	101, 745, 971
HpyF10VI	GCNNNNNNNGC	4 cut(s)	511, 620, 629, 833
HpyF3I	CTNAG	6 cut(s)	264, 375, 449, 458, 792, 1012
Hsp92II	CATG	2 cut(s)	73, 307
Kzo9I	GATC	8 cut(s)	49, 327, 357, 366, 561, 991, 1043, 1095
LmnI	GCTCC	1 cut(s)	660
Lsp1109I	GCAGC	4 cut(s)	17, 328, 635, 656
LweI	GCATC	1 cut(s)	110
MaeIII	GTNAC	2 cut(s)	662, 1052
MalI	GATC	8 cut(s)	51, 329, 359, 368, 563, 993, 1045, 1097
MboI	GATC	8 cut(s)	49, 327, 357, 366, 561, 991, 1043, 1095
MflI	RGATCY	4 cut(s)	357, 366, 561, 991
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	3 cut(s)	679, 1108, 1114
MlyI	GAGTC	3 cut(s)	367, 803, 1025
MmeI	TCCRAC	1 cut(s)	1041
MseI	TTAA	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	614
MspI	CCGG	7 cut(s)	60, 270, 520, 884, 890, 902, 944
MspR9I	CCNGG	2 cut(s)	270, 521
Mva1269I	GAATGC	1 cut(s)	745
MvnI	CGCG	1 cut(s)	761
MwoI	GCNNNNNNNGC	4 cut(s)	511, 620, 629, 833
NciI	CCSGG	2 cut(s)	270, 521
NdeII	GATC	8 cut(s)	49, 327, 357, 366, 561, 991, 1043, 1095
NlaIII	CATG	2 cut(s)	73, 307
NlaIV	GGNNCC	5 cut(s)	493, 706, 835, 888, 894
NmeAIII	GCCGAG	1 cut(s)	583
NmuCI	GTSAC	1 cut(s)	662
NspV	TTCGAA	1 cut(s)	1112
PctI	GAATGC	1 cut(s)	745
PfeI	GAWTC	1 cut(s)	391
PinAI	ACCGGT	1 cut(s)	59
PkrI	GCNGC	6 cut(s)	7, 318, 432, 625, 646, 853
Ple19I	CGATCG	1 cut(s)	330
PleI	GAGTC	3 cut(s)	367, 802, 1024
PpsI	GAGTC	3 cut(s)	367, 802, 1024
Psp124BI	GAGCTC	1 cut(s)	69
PspN4I	GGNNCC	5 cut(s)	493, 706, 835, 888, 894
PspPI	GGNCC	2 cut(s)	705, 834
PstI	CTGCAG	1 cut(s)	973
PsuI	RGATCY	4 cut(s)	357, 366, 561, 991
PvuI	CGATCG	1 cut(s)	330
PvuII	CAGCTG	1 cut(s)	614
RsaI	GTAC	2 cut(s)	583, 734
RsaNI	GTAC	2 cut(s)	582, 733
SacI	GAGCTC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	6 cut(s)	6, 317, 431, 624, 645, 852
Sau3AI	GATC	8 cut(s)	49, 327, 357, 366, 561, 991, 1043, 1095
Sau96I	GGNCC	2 cut(s)	705, 834
SchI	GAGTC	3 cut(s)	367, 803, 1025
ScrFI	CCNGG	2 cut(s)	270, 521
SduI	GDGCHC	1 cut(s)	69
SfaNI	GCATC	1 cut(s)	110
SfcI	CTRYAG	2 cut(s)	19, 969
SfuI	TTCGAA	1 cut(s)	1112
SgrAI	CRCCGGYG	2 cut(s)	59, 943
SinI	GGWCC	1 cut(s)	705
Sse9I	AATT	3 cut(s)	679, 1108, 1114
SsiI	CCGC	9 cut(s)	110, 431, 497, 565, 586, 673, 827, 852, 856
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	2 cut(s)	268, 519
StyI	CCWWGG	2 cut(s)	627, 1028
TaaI	ACNGT	5 cut(s)	23, 287, 438, 581, 916
TaqI	TCGA	5 cut(s)	312, 326, 606, 1094, 1112
TasI	AATT	3 cut(s)	679, 1108, 1114
TatI	WGTACW	1 cut(s)	732
TauI	GCSGC	2 cut(s)	433, 854
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	3 cut(s)	545, 706, 885
TseFI	GTSAC	1 cut(s)	662
TseI	GCWGC	4 cut(s)	5, 316, 623, 644
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	2 cut(s)	107, 494
TspGWI	ACGGA	4 cut(s)	647, 697, 968, 1056
TspRI	CASTG	3 cut(s)	545, 706, 885
VpaK11BI	GGWCC	1 cut(s)	705
XapI	RAATTY	1 cut(s)	1108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.