Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0013977

Physical Location & Seq

Genomic Coordinates Forward (+)

15064066 .. 15065136

Gene Structure 1071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g15420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCAGCTACAATGGATTTCTACAGTTGCAGATCAGCTCTTCACTCATCATCAGATCCCTTCAGAGGTGAGCTGATGGAAGCACTTGAGCCTTTTATGAAAAGTGTTTCTTCATTGCCGCCGCCGCCGTCTTCCCTTCCCACCACCACCGCTTCTCCTCCCTTTTCCTCCGCCTCTCTCCTCCCTTCTTTCCCCTCTACCTCCTACGACTTCCTCTCTTTCCCAAACCAGCCCACTTACTACCACGACGGTTGCTCCACCTCTTCTATGACCCAGGTGTTTTCAGATGGGTTCTTTGAGCAGCAGCCGCCGTCAATCGGGCTGAACCACCTCACCCCCTCCCAGATCCACCAGATCCAAGCTCAGATCCAGTCTCAATCCCAACCCCAACAGCCCCAAATCTCTTGGGATAACTACCACCACCAAGTTTCCCAGACGTCATCTCGTACCCTCAGCTTCCTCAGCCCCAAGCCCATCCCGATGAAGCAGGTGGGCTCGGCTGGTTCGCCGCCGAAACCCACCAAGCTTTACAGGGGTGTGAGGCAACGCCACTGGGGAAAATGGGTCGCTGAGATCAGGCTCCCTAAGAACCGCACCAGGCTCTGGCTCGGAACTTTCGACACGGCGGAGGAAGCCGCTTTGGCTTACGACAAGGCGGCGTACAAGCTCAGAGGCGACTTCGCCAGGCTCAATTTCCCGCACCTCCGCCACAACGGATCCGTCGTCGGAGGCGAGTTCGGTGAGTACAAGCCTCTGCATTCCTCAGTCGACGCCAAGCTTCAAGCCATCTGCGAAGGCTTGGCCGAGACTCAGAAACAGGGCAAGTCAGGGAAGCCAGCCAAGAGGTCCTCCGCCTCCAGCCGACAGCCGGAGCCGGAGACTTTAGCGGTCAAGGTTGAAACCTCGTCGCCGGTGACGACTGATAGCGAAGGGTCTGCCGGGTCTTCGCCGCTGTCTGATCTGACTTTCTGCGACTCCACGGAGCCATGGGAGAACAGCGGCGCTTCGGAGAGCACTTCCGTGTTGGAGAAGTATCCGTCCGAGATTGATTGGGCTTCGATCCTCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033554 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045595 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071369 GO:0071470 GO:0071472 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

357

Amino Acids

38.97

Weight (kDa)

6.37

Isoelectric Point (pI)

62.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	176 - 225	5.1e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78080
fragaria_vesca	FvH4_5g37820
malus_domestica	MD08G1180200.v1.1 MD15G1365500.v1.1
prunus_persica	Prupe.1G513600_v2.0.a1 Prupe.3G009400_v2.0.a1
pyrus_communis	pycom08g15420 pycom15g32790
rosa_chinensis	RchiOBHm_Chr7g0239701
rosa_laevigata	RLG00000000738
rosa_multiflora	Rmu_sc0000063.1_g000026
rosa_roxburghii	Rroxscaffold_3G00220810
rosa_samantha	Rh7AG483000 Rh7BG455900 Rh7CG500600 Rh7DG468800
rosa_wichuraiana	Rw7G040430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	478
AatII	GACGTC	1 cut(s)	440
Acc36I	ACCTGC	1 cut(s)	478
AccB7I	CCANNNNNTGG	1 cut(s)	603
AccI	GTMKAC	1 cut(s)	768
AclWI	GGATC	7 cut(s)	50, 340, 349, 361, 711, 724, 1054
AcoI	YGGCCR	1 cut(s)	801
AcuI	CTGAAG	1 cut(s)	46
AcyI	GRCGYC	2 cut(s)	437, 771
AfaI	GTAC	3 cut(s)	448, 662, 746
AfiI	CCNNNNNNNGG	4 cut(s)	65, 317, 603, 868
AgsI	TTSAA	2 cut(s)	782, 899
AjnI	CCWGG	3 cut(s)	273, 596, 683
AleI	CACNNNNGTG	1 cut(s)	1019
AluBI	AGCT	8 cut(s)	8, 38, 73, 362, 456, 526, 667, 778
AluI	AGCT	8 cut(s)	8, 38, 73, 362, 456, 526, 667, 778
Alw21I	GWGCWC	1 cut(s)	1016
Alw26I	GTCTC	3 cut(s)	378, 800, 872
AlwI	GGATC	7 cut(s)	50, 340, 349, 361, 711, 724, 1054
AlwNI	CAGNNNCTG	1 cut(s)	603
AoxI	GGCC	1 cut(s)	801
ApeKI	GCWGC	3 cut(s)	5, 301, 304
AspLEI	GCGC	1 cut(s)	1004
AspS9I	GGNCC	1 cut(s)	846
AsuC2I	CCSGG	1 cut(s)	940
AsuHPI	GGTGA	4 cut(s)	80, 325, 752, 925
AvaII	GGWCC	1 cut(s)	846
BamHI	GGATCC	1 cut(s)	716
BanII	GRGCYC	1 cut(s)	497
BbsI	GAAGAC	2 cut(s)	123, 936
Bbv12I	GWGCWC	1 cut(s)	1016
BbvCI	CCTCAGC	2 cut(s)	452, 461
BbvI	GCAGC	3 cut(s)	17, 313, 316
BccI	CCATC	4 cut(s)	70, 281, 482, 794
BceAI	ACGGC	3 cut(s)	112, 295, 639
BcgI	CGANNNNNNTGC	2 cut(s)	917, 951
BciT130I	CCWGG	3 cut(s)	275, 598, 685
BciVI	GTATCC	1 cut(s)	1044
BcnI	CCSGG	1 cut(s)	940
BcoDI	GTCTC	3 cut(s)	378, 800, 872
BfmI	CTRYAG	1 cut(s)	22
BfoI	RGCGCY	1 cut(s)	1005
BfuAI	ACCTGC	1 cut(s)	478
BfuI	GTATCC	1 cut(s)	1044
BglI	GCCNNNNNGGC	1 cut(s)	641
Bme1390I	CCNGG	4 cut(s)	275, 598, 685, 940
Bme18I	GGWCC	1 cut(s)	846
BmgT120I	GGNCC	1 cut(s)	846
BmiI	GGNNCC	4 cut(s)	581, 718, 873, 984
BmrFI	CCNGG	4 cut(s)	275, 598, 685, 940
BmrI	ACTGGG	1 cut(s)	562
BmuI	ACTGGG	1 cut(s)	562
BpiI	GAAGAC	2 cut(s)	123, 936
BpmI	CTGGAG	1 cut(s)	841
Bpu10I	CCTNAGC	2 cut(s)	452, 461
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	940
BsaHI	GRCGYC	2 cut(s)	437, 771
BsaJI	CCNNGG	3 cut(s)	273, 978, 986
BsaXI	ACNNNNNCTCC	4 cut(s)	139, 169, 239, 269
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 317, 603, 868
Bse118I	RCCGGY	1 cut(s)	910
Bse1I	ACTGG	2 cut(s)	370, 557
Bse3DI	GCAATG	1 cut(s)	113
BseBI	CCWGG	3 cut(s)	275, 598, 685
BseDI	CCNNGG	3 cut(s)	273, 978, 986
BseGI	GGATG	1 cut(s)	474
BseLI	CCNNNNNNNGG	4 cut(s)	65, 317, 603, 868
BseMI	GCAATG	1 cut(s)	113
BseMII	CTCAG	7 cut(s)	377, 466, 475, 561, 682, 777, 824
BseNI	ACTGG	2 cut(s)	370, 557
BseRI	GAGGAG	2 cut(s)	147, 170
BseXI	GCAGC	3 cut(s)	17, 313, 316
BshFI	GGCC	1 cut(s)	803
BsiHKAI	GWGCWC	1 cut(s)	1016
BsiSI	CCGG	4 cut(s)	869, 875, 911, 939
BslI	CCNNNNNNNGG	4 cut(s)	65, 317, 603, 868
BsmAI	GTCTC	3 cut(s)	378, 800, 872
BsmI	GAATGC	1 cut(s)	757
BsnI	GGCC	1 cut(s)	803
Bsp1286I	GDGCHC	2 cut(s)	497, 1016
Bsp143I	GATC	9 cut(s)	32, 55, 345, 354, 366, 573, 716, 958, 1059
Bsp19I	CCATGG	1 cut(s)	986
BspANI	GGCC	1 cut(s)	803
BspCNI	CTCAG	7 cut(s)	376, 465, 474, 562, 681, 776, 823
BspLI	GGNNCC	4 cut(s)	581, 718, 873, 984
BspMI	ACCTGC	1 cut(s)	478
BspPI	GGATC	7 cut(s)	50, 340, 349, 361, 711, 724, 1054
BspQI	GCTCTTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	910
BsrI	ACTGG	2 cut(s)	370, 557
BssAI	RCCGGY	1 cut(s)	910
BssECI	CCNNGG	3 cut(s)	273, 978, 986
BssMI	GATC	9 cut(s)	32, 55, 345, 354, 366, 573, 716, 958, 1059
BssNI	GRCGYC	2 cut(s)	437, 771
BssT1I	CCWWGG	1 cut(s)	986
Bst2UI	CCWGG	3 cut(s)	275, 598, 685
Bst4CI	ACNGT	2 cut(s)	26, 251
Bst6I	CTCTTC	2 cut(s)	45, 268
BstACI	GRCGYC	2 cut(s)	437, 771
BstC8I	GCNNGC	1 cut(s)	837
BstDEI	CTNAG	9 cut(s)	363, 452, 461, 570, 585, 668, 763, 810, 1064
BstDSI	CCRYGG	2 cut(s)	978, 986
BstF5I	GGATG	1 cut(s)	474
BstH2I	RGCGCY	1 cut(s)	1005
BstHHI	GCGC	1 cut(s)	1004
BstKTI	GATC	9 cut(s)	35, 58, 348, 357, 369, 576, 719, 961, 1062
BstMAI	GTCTC	3 cut(s)	378, 800, 872
BstMBI	GATC	9 cut(s)	32, 55, 345, 354, 366, 573, 716, 958, 1059
BstMWI	GCNNNNNNNGC	5 cut(s)	124, 307, 462, 632, 641
BstNI	CCWGG	3 cut(s)	275, 598, 685
BstSCI	CCNGG	4 cut(s)	273, 596, 683, 938
BstSFI	CTRYAG	1 cut(s)	22
BstV1I	GCAGC	3 cut(s)	17, 313, 316
BstV2I	GAAGAC	2 cut(s)	123, 936
BstX2I	RGATCY	5 cut(s)	55, 345, 354, 366, 716
BstYI	RGATCY	5 cut(s)	55, 345, 354, 366, 716
BsuI	GTATCC	1 cut(s)	1044
BsuRI	GGCC	1 cut(s)	803
BtgI	CCRYGG	2 cut(s)	978, 986
BtsCI	GGATG	1 cut(s)	474
BtsIMutI	CAGTG	1 cut(s)	550
BveI	ACCTGC	1 cut(s)	478
Cac8I	GCNNGC	1 cut(s)	837
CaiI	CAGNNNCTG	1 cut(s)	603
CfoI	GCGC	1 cut(s)	1004
Cfr10I	RCCGGY	1 cut(s)	910
Cfr13I	GGNCC	1 cut(s)	846
CseI	GACGC	1 cut(s)	779
Csp6I	GTAC	3 cut(s)	447, 661, 745
CspCI	CAANNNNNGTGG	2 cut(s)	233, 268
CviAII	CATG	1 cut(s)	987
CviQI	GTAC	3 cut(s)	447, 661, 745
DdeI	CTNAG	9 cut(s)	363, 452, 461, 570, 585, 668, 763, 810, 1064
DpnI	GATC	9 cut(s)	34, 57, 347, 356, 368, 575, 718, 960, 1061
DpnII	GATC	9 cut(s)	32, 55, 345, 354, 366, 573, 716, 958, 1059
EaeI	YGGCCR	1 cut(s)	801
Eam1104I	CTCTTC	2 cut(s)	45, 268
EarI	CTCTTC	2 cut(s)	45, 268
EciI	GGCGGA	4 cut(s)	160, 641, 695, 841
Eco130I	CCWWGG	1 cut(s)	986
Eco24I	GRGCYC	1 cut(s)	497
Eco47I	GGWCC	1 cut(s)	846
Eco57I	CTGAAG	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	846
EcoRII	CCWGG	3 cut(s)	273, 596, 683
EcoT14I	CCWWGG	1 cut(s)	986
EcoT38I	GRGCYC	1 cut(s)	497
ErhI	CCWWGG	1 cut(s)	986
FaeI	CATG	1 cut(s)	990
FaiI	YATR	3 cut(s)	98, 269, 988
FalI	AAGNNNNNCTT	2 cut(s)	94, 126
FatI	CATG	1 cut(s)	986
FauI	CCCGC	1 cut(s)	705
FblI	GTMKAC	1 cut(s)	768
FokI	GGATG	1 cut(s)	461
FriOI	GRGCYC	1 cut(s)	497
GlaI	GCGC	1 cut(s)	1003
GsuI	CTGGAG	1 cut(s)	841
HaeII	RGCGCY	1 cut(s)	1005
HaeIII	GGCC	1 cut(s)	803
HapII	CCGG	4 cut(s)	869, 875, 911, 939
HgaI	GACGC	1 cut(s)	779
HhaI	GCGC	1 cut(s)	1004
Hin1I	GRCGYC	2 cut(s)	437, 771
Hin1II	CATG	1 cut(s)	990
Hin6I	GCGC	1 cut(s)	1002
HinP1I	GCGC	1 cut(s)	1002
HincII	GTYRAC	1 cut(s)	769
HindII	GTYRAC	1 cut(s)	769
HindIII	AAGCTT	2 cut(s)	524, 776
HinfI	GANTC	2 cut(s)	808, 974
HpaII	CCGG	4 cut(s)	869, 875, 911, 939
HphI	GGTGA	4 cut(s)	80, 325, 752, 925
Hpy166II	GTNNAC	1 cut(s)	769
Hpy188III	TCNNGA	1 cut(s)	478
Hpy8I	GTNNAC	1 cut(s)	769
Hpy99I	CGWCG	5 cut(s)	251, 725, 728, 773, 910
HpyAV	CCTTC	5 cut(s)	70, 146, 195, 788, 923
HpyCH4III	ACNGT	2 cut(s)	26, 251
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	2 cut(s)	30, 757
HpyF10VI	GCNNNNNNNGC	5 cut(s)	124, 307, 462, 632, 641
HpyF3I	CTNAG	9 cut(s)	363, 452, 461, 570, 585, 668, 763, 810, 1064
HpySE526I	ACGT	1 cut(s)	437
Hsp92I	GRCGYC	2 cut(s)	437, 771
Hsp92II	CATG	1 cut(s)	990
HspAI	GCGC	1 cut(s)	1002
Kzo9I	GATC	9 cut(s)	32, 55, 345, 354, 366, 573, 716, 958, 1059
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	4 cut(s)	260, 585, 871, 982
Lsp1109I	GCAGC	3 cut(s)	17, 313, 316
MaeII	ACGT	1 cut(s)	437
MaeIII	GTNAC	1 cut(s)	913
MalI	GATC	9 cut(s)	34, 57, 347, 356, 368, 575, 718, 960, 1061
MboI	GATC	9 cut(s)	32, 55, 345, 354, 366, 573, 716, 958, 1059
MboII	GAAGA	5 cut(s)	32, 102, 123, 255, 936
MflI	RGATCY	5 cut(s)	55, 345, 354, 366, 716
MhlI	GDGCHC	2 cut(s)	497, 1016
MluCI	AATT	1 cut(s)	691
MlyI	GAGTC	2 cut(s)	802, 968
MmeI	TCCRAC	2 cut(s)	706, 1005
MseI	TTAA	1 cut(s)	1069
MslI	CAYNNNNRTG	2 cut(s)	479, 1019
MspA1I	CMGCKG	2 cut(s)	952, 999
MspI	CCGG	4 cut(s)	869, 875, 911, 939
MspR9I	CCNGG	4 cut(s)	275, 598, 685, 940
Mva1269I	GAATGC	1 cut(s)	757
MvaI	CCWGG	3 cut(s)	275, 598, 685
MwoI	GCNNNNNNNGC	5 cut(s)	124, 307, 462, 632, 641
NciI	CCSGG	1 cut(s)	940
NcoI	CCATGG	1 cut(s)	986
NdeII	GATC	9 cut(s)	32, 55, 345, 354, 366, 573, 716, 958, 1059
NlaIII	CATG	1 cut(s)	990
NlaIV	GGNNCC	4 cut(s)	581, 718, 873, 984
NmeAIII	GCCGAG	2 cut(s)	476, 829
NmuCI	GTSAC	1 cut(s)	913
OliI	CACNNNNGTG	1 cut(s)	1019
PaqCI	CACCTGC	1 cut(s)	478
PciSI	GCTCTTC	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	4 cut(s)	615, 720, 729, 914
PctI	GAATGC	1 cut(s)	757
PflMI	CCANNNNNTGG	1 cut(s)	603
PleI	GAGTC	2 cut(s)	802, 968
PpsI	GAGTC	2 cut(s)	802, 968
PpuMI	RGGWCCY	1 cut(s)	846
Psp5II	RGGWCCY	1 cut(s)	846
Psp6I	CCWGG	3 cut(s)	273, 596, 683
PspGI	CCWGG	3 cut(s)	273, 596, 683
PspN4I	GGNNCC	4 cut(s)	581, 718, 873, 984
PspPI	GGNCC	1 cut(s)	846
PspPPI	RGGWCCY	1 cut(s)	846
PstNI	CAGNNNCTG	1 cut(s)	603
PsuI	RGATCY	5 cut(s)	55, 345, 354, 366, 716
RsaI	GTAC	3 cut(s)	448, 662, 746
RsaNI	GTAC	3 cut(s)	447, 661, 745
RseI	CAYNNNNRTG	2 cut(s)	479, 1019
SalI	GTCGAC	1 cut(s)	767
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	1069
Sau3AI	GATC	9 cut(s)	32, 55, 345, 354, 366, 573, 716, 958, 1059
Sau96I	GGNCC	1 cut(s)	846
SchI	GAGTC	2 cut(s)	802, 968
ScrFI	CCNGG	4 cut(s)	275, 598, 685, 940
SduI	GDGCHC	2 cut(s)	497, 1016
SfcI	CTRYAG	1 cut(s)	22
SgrAI	CRCCGGYG	1 cut(s)	910
SinI	GGWCC	1 cut(s)	846
SmiMI	CAYNNNNRTG	2 cut(s)	479, 1019
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	1 cut(s)	691
StyD4I	CCNGG	4 cut(s)	273, 596, 683, 938
StyI	CCWWGG	1 cut(s)	986
TaaI	ACNGT	2 cut(s)	26, 251
TaiI	ACGT	1 cut(s)	440
TaqI	TCGA	3 cut(s)	618, 768, 1058
TasI	AATT	1 cut(s)	691
TatI	WGTACW	1 cut(s)	744
TauI	GCSGC	9 cut(s)	121, 124, 127, 310, 511, 638, 659, 952, 1002
Tru1I	TTAA	1 cut(s)	1069
Tru9I	TTAA	1 cut(s)	1069
TscAI	CASTG	1 cut(s)	557
TseFI	GTSAC	1 cut(s)	913
TseI	GCWGC	3 cut(s)	5, 301, 304
Tsp45I	GTSAC	1 cut(s)	913
TspDTI	ATGAA	3 cut(s)	102, 113, 497
TspGWI	ACGGA	5 cut(s)	709, 729, 995, 1009, 1026
TspRI	CASTG	1 cut(s)	557
Van91I	CCANNNNNTGG	1 cut(s)	603
VpaK11BI	GGWCC	1 cut(s)	846
XmiI	GTMKAC	1 cut(s)	768
ZraI	GACGTC	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.