Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0013977

Physical Location & Seq

Genomic Coordinates Reverse (-)

67640097 .. 67642492

Gene Structure 2396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG500600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCAGCTATGGATATCTACAGTAGCAGACCTCTTCAGTCATCTTCGGATCCTTTTACGGGTGAGCTCATGGAAGCACTTGAACCTTTTATGAAAAGTGCGTCTCCACCGCCACCTTCTTCTTCTTATTCTCCTTCTTCTTTTGATTTCAACCCTTCTATCCCAACCCCATCTTCTTCTTATTCTTCTTCAGCTTCAACCCCTTTCCTTTCTTCTACTCCTTCTCCTTCTTCTTCCTACAACTACCTGTCTTTCTCCCCTTCGATCCCTACCCCGCAGCCCAATTTGTACCAAGACGGTGGCTCAACCTTTTCCTTGGGTTTCGAGCAGCAAGGTTCGATTGGGCTGAACCACCTCACCCCTTCCCAGATCCACCAGATCCAGGCCGAGATCCAGCTCCAGAATCAACCCCAGATGATGGCATGGCAGCAAAACTATCAGCAACAGTCATCACCATCCCACACGCTCAGCTTTCTCAGTCCGAAACCTGTTCCCATGAAGCAATCTGGTTCGCCGCCCAAGCCCACCAAGCTTTACCGGGGAGTGAGGCAGAGGCATTGGGGGAAATGGGTCGCCGAAATCCGGCTACCCAAGAACCGAACCCGCCTCTGGCTTGGCACTTTCGACACAGCTGAAGAAGCAGCCTTGGCCTATGACAAAGCAGCTTACAAGCTCCGTGGCGACTTTGCCCGCCTCAATTTCCCTCATTTGAAGCACACCGGCTCAGTTGTTGGTGGCGAGTTCGGCGAGTACAAGCCTCTGCATTCCTCTGTTGACGCGAAGCTTCAGGCCATTTGCGAAGGGTTGGCTGAGTCGCAGAAACAGGGGAAGGCAGGGAAGCAGGCGGGTGCGGCCAAGAAATCATCGGCCGCCCGCTCGCAGCAGAAGCCGAAGTCAACACCGGTGCCTGAACCGGAACCGGAGGCTTTGACGGTGAAGATGGAGAGGTCCTCCTTGTCGCCGGTGATGACGGATAGTGATGGGTCTGCAGGGTCTTCTCCTCTATCGGATCTGACCTTTGCCGACTACTCAGAGTCCTCATCGCCCTGGGAGAACTGCGGAACGGAGAGTTACATGTTGGAGAAGTATCCATCAGAGATTGATTGGGCTTCGATCTTCAATCAAAATTCGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033554 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045595 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071369 GO:0071470 GO:0071472 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

378

Amino Acids

41.24

Weight (kDa)

6.4

Isoelectric Point (pI)

70.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	178 - 227	5.5e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78080
fragaria_vesca	FvH4_5g37820
malus_domestica	MD08G1180200.v1.1 MD15G1365500.v1.1
prunus_persica	Prupe.1G513600_v2.0.a1 Prupe.3G009400_v2.0.a1
pyrus_communis	pycom08g15420 pycom15g32790
rosa_chinensis	RchiOBHm_Chr7g0239701
rosa_laevigata	RLG00000000738
rosa_multiflora	Rmu_sc0000063.1_g000026
rosa_roxburghii	Rroxscaffold_3G00220810
rosa_samantha	Rh7AG483000 Rh7BG455900 Rh7CG500600 Rh7DG468800
rosa_wichuraiana	Rw7G040430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	904
AccB7I	CCANNNNNTGG	1 cut(s)	418
AccBSI	CCGCTC	1 cut(s)	876
AccII	CGCG	1 cut(s)	779
AclWI	GGATC	7 cut(s)	44, 57, 259, 364, 373, 385, 1017
AcoI	YGGCCR	2 cut(s)	852, 867
AcsI	RAATTY	1 cut(s)	1126
AcuI	CTGAAG	4 cut(s)	20, 174, 654, 770
AfaI	GTAC	2 cut(s)	290, 752
AfiI	CCNNNNNNNGG	5 cut(s)	59, 382, 418, 582, 609
AflIII	ACRYGT	1 cut(s)	1074
AgeI	ACCGGT	1 cut(s)	901
AgsI	TTSAA	5 cut(s)	83, 151, 198, 712, 1120
AjnI	CCWGG	2 cut(s)	381, 1046
AjuI	GAANNNNNNNTTGG	2 cut(s)	157, 189
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	7 cut(s)	44, 57, 259, 364, 373, 385, 1017
AoxI	GGCC	5 cut(s)	384, 648, 789, 852, 867
ApeKI	GCWGC	7 cut(s)	5, 277, 328, 427, 641, 662, 880
ApoI	RAATTY	1 cut(s)	1126
AsiGI	ACCGGT	1 cut(s)	901
AspS9I	GGNCC	1 cut(s)	948
AsuC2I	CCSGG	1 cut(s)	539
AsuHPI	GGTGA	5 cut(s)	74, 349, 444, 946, 976
AsuII	TTCGAA	1 cut(s)	1130
AvaII	GGWCC	1 cut(s)	948
BamHI	GGATCC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	904
BanII	GRGCYC	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	987
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	7 cut(s)	17, 289, 340, 439, 653, 674, 892
BccI	CCATC	6 cut(s)	178, 412, 463, 934, 974, 1099
BciT130I	CCWGG	2 cut(s)	383, 1048
BciVI	GTATCC	1 cut(s)	1098
BcnI	CCSGG	1 cut(s)	539
BcoDI	GTCTC	1 cut(s)	108
BfmI	CTRYAG	2 cut(s)	19, 987
BfuI	GTATCC	1 cut(s)	1098
BlpI	GCTNAGC	1 cut(s)	467
Bme1390I	CCNGG	3 cut(s)	383, 539, 1048
Bme18I	GGWCC	1 cut(s)	948
BmgT120I	GGNCC	1 cut(s)	948
BmiI	GGNNCC	3 cut(s)	51, 906, 918
BmrFI	CCNGG	3 cut(s)	383, 539, 1048
BpiI	GAAGAC	1 cut(s)	987
BplI	GAGNNNNNCTC	2 cut(s)	935, 967
BpmI	CTGGAG	1 cut(s)	383
Bpu1102I	GCTNAGC	1 cut(s)	467
Bpu14I	TTCGAA	1 cut(s)	1130
BpuMI	CCSGG	1 cut(s)	539
BsaJI	CCNNGG	6 cut(s)	315, 538, 645, 676, 1046, 1047
BsaWI	WCCGGW	3 cut(s)	901, 913, 919
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	5 cut(s)	59, 382, 418, 582, 609
Bse118I	RCCGGY	3 cut(s)	719, 901, 961
BseBI	CCWGG	2 cut(s)	383, 1048
BseDI	CCNNGG	6 cut(s)	315, 538, 645, 676, 1046, 1047
BseGI	GGATG	1 cut(s)	455
BseLI	CCNNNNNNNGG	5 cut(s)	59, 382, 418, 582, 609
BseMII	CTCAG	5 cut(s)	481, 490, 738, 801, 1044
BseRI	GAGGAG	1 cut(s)	990
BseX3I	CGGCCG	1 cut(s)	867
BseXI	GCAGC	7 cut(s)	17, 289, 340, 439, 653, 674, 892
Bsh1236I	CGCG	1 cut(s)	779
Bsh1285I	CGRYCG	1 cut(s)	870
BshFI	GGCC	5 cut(s)	386, 650, 791, 854, 869
BshNI	GGYRCC	1 cut(s)	904
BshTI	ACCGGT	1 cut(s)	901
BsiEI	CGRYCG	1 cut(s)	870
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	7 cut(s)	538, 583, 720, 902, 914, 920, 962
BslI	CCNNNNNNNGG	5 cut(s)	59, 382, 418, 582, 609
BsmAI	GTCTC	1 cut(s)	108
BsmBI	CGTCTC	1 cut(s)	108
BsmI	GAATGC	1 cut(s)	763
BsnI	GGCC	5 cut(s)	386, 650, 791, 854, 869
Bsp119I	TTCGAA	1 cut(s)	1130
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	7 cut(s)	49, 264, 369, 378, 390, 1009, 1113
Bsp1720I	GCTNAGC	1 cut(s)	467
BspANI	GGCC	5 cut(s)	386, 650, 791, 854, 869
BspCNI	CTCAG	5 cut(s)	480, 489, 737, 802, 1043
BspFNI	CGCG	1 cut(s)	779
BspLI	GGNNCC	3 cut(s)	51, 906, 918
BspMAI	CTGCAG	1 cut(s)	991
BspPI	GGATC	7 cut(s)	44, 57, 259, 364, 373, 385, 1017
BspT104I	TTCGAA	1 cut(s)	1130
BspT107I	GGYRCC	1 cut(s)	904
BsrBI	CCGCTC	1 cut(s)	876
BsrFI	RCCGGY	3 cut(s)	719, 901, 961
BssAI	RCCGGY	3 cut(s)	719, 901, 961
BssECI	CCNNGG	6 cut(s)	315, 538, 645, 676, 1046, 1047
BssMI	GATC	7 cut(s)	49, 264, 369, 378, 390, 1009, 1113
BssT1I	CCWWGG	2 cut(s)	315, 645
Bst2UI	CCWGG	2 cut(s)	383, 1048
Bst4CI	ACNGT	4 cut(s)	23, 299, 447, 934
Bst6I	CTCTTC	1 cut(s)	39
BstBI	TTCGAA	1 cut(s)	1130
BstC8I	GCNNGC	4 cut(s)	691, 843, 874, 878
BstDEI	CTNAG	5 cut(s)	467, 476, 724, 810, 1030
BstDSI	CCRYGG	1 cut(s)	676
BstF5I	GGATG	1 cut(s)	455
BstFNI	CGCG	1 cut(s)	779
BstKTI	GATC	7 cut(s)	52, 267, 372, 381, 393, 1012, 1116
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	7 cut(s)	49, 264, 369, 378, 390, 1009, 1113
BstMCI	CGRYCG	1 cut(s)	870
BstMWI	GCNNNNNNNGC	7 cut(s)	520, 529, 638, 647, 744, 851, 886
BstNI	CCWGG	2 cut(s)	383, 1048
BstNSI	RCATGY	1 cut(s)	1078
BstSCI	CCNGG	3 cut(s)	381, 537, 1046
BstSFI	CTRYAG	2 cut(s)	19, 987
BstUI	CGCG	1 cut(s)	779
BstV1I	GCAGC	7 cut(s)	17, 289, 340, 439, 653, 674, 892
BstV2I	GAAGAC	1 cut(s)	987
BstX2I	RGATCY	5 cut(s)	49, 369, 378, 390, 1009
BstXI	CCANNNNNNTGG	1 cut(s)	299
BstYI	RGATCY	5 cut(s)	49, 369, 378, 390, 1009
BstZI	CGGCCG	1 cut(s)	867
BsuI	GTATCC	1 cut(s)	1098
BsuRI	GGCC	5 cut(s)	386, 650, 791, 854, 869
BtgI	CCRYGG	1 cut(s)	676
BtgZI	GCGATG	1 cut(s)	1026
BtsCI	GGATG	1 cut(s)	455
Cac8I	GCNNGC	4 cut(s)	691, 843, 874, 878
Cfr10I	RCCGGY	3 cut(s)	719, 901, 961
Cfr13I	GGNCC	1 cut(s)	948
CseI	GACGC	2 cut(s)	90, 785
Csp6I	GTAC	2 cut(s)	289, 751
CspAI	ACCGGT	1 cut(s)	901
CspCI	CAANNNNNGTGG	2 cut(s)	658, 693
CviAII	CATG	4 cut(s)	70, 423, 496, 1075
CviQI	GTAC	2 cut(s)	289, 751
DdeI	CTNAG	5 cut(s)	467, 476, 724, 810, 1030
DpnI	GATC	7 cut(s)	51, 266, 371, 380, 392, 1011, 1115
DpnII	GATC	7 cut(s)	49, 264, 369, 378, 390, 1009, 1113
EaeI	YGGCCR	2 cut(s)	852, 867
EagI	CGGCCG	1 cut(s)	867
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	67
EclXI	CGGCCG	1 cut(s)	867
Eco130I	CCWWGG	2 cut(s)	315, 645
Eco24I	GRGCYC	1 cut(s)	69
Eco32I	GATATC	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	948
Eco52I	CGGCCG	1 cut(s)	867
Eco53kI	GAGCTC	1 cut(s)	67
Eco57I	CTGAAG	4 cut(s)	20, 174, 654, 770
EcoICRI	GAGCTC	1 cut(s)	67
EcoO109I	RGGNCCY	1 cut(s)	948
EcoRII	CCWGG	2 cut(s)	381, 1046
EcoRV	GATATC	1 cut(s)	16
EcoT14I	CCWWGG	2 cut(s)	315, 645
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	2 cut(s)	315, 645
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	4 cut(s)	73, 426, 499, 1078
FaiI	YATR	7 cut(s)	11, 71, 92, 424, 497, 654, 1076
FatI	CATG	4 cut(s)	69, 422, 495, 1074
FauI	CCCGC	5 cut(s)	282, 611, 698, 838, 881
FokI	GGATG	1 cut(s)	442
FriOI	GRGCYC	1 cut(s)	69
GsuI	CTGGAG	1 cut(s)	383
HaeIII	GGCC	5 cut(s)	386, 650, 791, 854, 869
HapII	CCGG	7 cut(s)	538, 583, 720, 902, 914, 920, 962
HgaI	GACGC	2 cut(s)	90, 785
Hin1II	CATG	4 cut(s)	73, 426, 499, 1078
HincII	GTYRAC	2 cut(s)	775, 897
HindII	GTYRAC	2 cut(s)	775, 897
HindIII	AAGCTT	2 cut(s)	530, 782
HinfI	GANTC	3 cut(s)	403, 812, 1034
HpaII	CCGG	7 cut(s)	538, 583, 720, 902, 914, 920, 962
HphI	GGTGA	5 cut(s)	74, 349, 444, 946, 976
Hpy166II	GTNNAC	2 cut(s)	775, 897
Hpy188I	TCNGA	6 cut(s)	49, 483, 1009, 1014, 1033, 1096
Hpy188III	TCNNGA	1 cut(s)	400
Hpy8I	GTNNAC	2 cut(s)	775, 897
HpyAV	CCTTC	9 cut(s)	126, 144, 165, 231, 237, 270, 372, 794, 823
HpyCH4III	ACNGT	4 cut(s)	23, 299, 447, 934
HpyCH4V	TGCA	2 cut(s)	763, 989
HpyF10VI	GCNNNNNNNGC	7 cut(s)	520, 529, 638, 647, 744, 851, 886
HpyF3I	CTNAG	5 cut(s)	467, 476, 724, 810, 1030
Hsp92II	CATG	4 cut(s)	73, 426, 499, 1078
Kzo9I	GATC	7 cut(s)	49, 264, 369, 378, 390, 1009, 1113
LmnI	GCTCC	2 cut(s)	402, 678
Lsp1109I	GCAGC	7 cut(s)	17, 289, 340, 439, 653, 674, 892
MaeIII	GTNAC	1 cut(s)	1070
MalI	GATC	7 cut(s)	51, 266, 371, 380, 392, 1011, 1115
MbiI	CCGCTC	1 cut(s)	876
MboI	GATC	7 cut(s)	49, 264, 369, 378, 390, 1009, 1113
MflI	RGATCY	5 cut(s)	49, 369, 378, 390, 1009
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	4 cut(s)	283, 697, 1126, 1132
MlyI	GAGTC	2 cut(s)	821, 1043
MmeI	TCCRAC	1 cut(s)	1059
MseI	TTAA	1 cut(s)	1135
MspA1I	CMGCKG	1 cut(s)	632
MspI	CCGG	7 cut(s)	538, 583, 720, 902, 914, 920, 962
MspR9I	CCNGG	3 cut(s)	383, 539, 1048
Mva1269I	GAATGC	1 cut(s)	763
MvaI	CCWGG	2 cut(s)	383, 1048
MvnI	CGCG	1 cut(s)	779
MwoI	GCNNNNNNNGC	7 cut(s)	520, 529, 638, 647, 744, 851, 886
NciI	CCSGG	1 cut(s)	539
NdeII	GATC	7 cut(s)	49, 264, 369, 378, 390, 1009, 1113
NlaIII	CATG	4 cut(s)	73, 426, 499, 1078
NlaIV	GGNNCC	3 cut(s)	51, 906, 918
NmeAIII	GCCGAG	1 cut(s)	412
NspI	RCATGY	1 cut(s)	1078
NspV	TTCGAA	1 cut(s)	1130
PasI	CCCWGGG	1 cut(s)	1047
PciI	ACATGT	1 cut(s)	1074
PctI	GAATGC	1 cut(s)	763
PfeI	GAWTC	1 cut(s)	403
PflMI	CCANNNNNTGG	1 cut(s)	418
PinAI	ACCGGT	1 cut(s)	901
PleI	GAGTC	2 cut(s)	820, 1042
PpsI	GAGTC	2 cut(s)	820, 1042
PpuMI	RGGWCCY	1 cut(s)	948
PscI	ACATGT	1 cut(s)	1074
Psp124BI	GAGCTC	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	948
Psp6I	CCWGG	2 cut(s)	381, 1046
PspGI	CCWGG	2 cut(s)	381, 1046
PspN4I	GGNNCC	3 cut(s)	51, 906, 918
PspPI	GGNCC	1 cut(s)	948
PspPPI	RGGWCCY	1 cut(s)	948
PstI	CTGCAG	1 cut(s)	991
PsuI	RGATCY	5 cut(s)	49, 369, 378, 390, 1009
PvuII	CAGCTG	1 cut(s)	632
RsaI	GTAC	2 cut(s)	290, 752
RsaNI	GTAC	2 cut(s)	289, 751
SacI	GAGCTC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	1135
Sau3AI	GATC	7 cut(s)	49, 264, 369, 378, 390, 1009, 1113
Sau96I	GGNCC	1 cut(s)	948
SchI	GAGTC	2 cut(s)	821, 1043
ScrFI	CCNGG	3 cut(s)	383, 539, 1048
SduI	GDGCHC	1 cut(s)	69
SfcI	CTRYAG	2 cut(s)	19, 987
SfuI	TTCGAA	1 cut(s)	1130
SgrAI	CRCCGGYG	2 cut(s)	901, 961
SinI	GGWCC	1 cut(s)	948
Sse9I	AATT	4 cut(s)	283, 697, 1126, 1132
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	3 cut(s)	381, 537, 1046
StyI	CCWWGG	2 cut(s)	315, 645
TaaI	ACNGT	4 cut(s)	23, 299, 447, 934
TaqI	TCGA	6 cut(s)	263, 324, 338, 624, 1112, 1130
TasI	AATT	4 cut(s)	283, 697, 1126, 1132
TatI	WGTACW	1 cut(s)	750
TauI	GCSGC	3 cut(s)	517, 854, 872
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	1 cut(s)	1135
Tru9I	TTAA	1 cut(s)	1135
TseI	GCWGC	7 cut(s)	5, 277, 328, 427, 641, 662, 880
TspDTI	ATGAA	2 cut(s)	107, 512
TspGWI	ACGGA	3 cut(s)	665, 986, 1079
Van91I	CCANNNNNTGG	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	948
XapI	RAATTY	1 cut(s)	1126
XceI	RCATGY	1 cut(s)	1078

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.