Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013977

Physical Location & Seq

Genomic Coordinates Forward (+)

4638522 .. 4639673

Gene Structure 1152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000738

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCAGCTATGGATATCTACACTAGCAGACCTCTTCAGTCATCTTCGGATCCTTTTACGGGTGAGCTCATGGAAGCACTTGAACCTTTTATGAAAAGTGCGTCTCCACCGCCACCTTCTTCTTCTTATTCTTCTTATTCTCCTTCTGCTTTTGATTTCAACCCTTCTATCCCAACCCCATCGTCTTCTTATTCTTCTTCTTCAACCCCTTTTCTTTCTTCTACTCCTTCTCCTTCTTCTTCTTCCTACAACTACATGTCTTTCTCCCCTTCGATCCCTACCCCGCAGCCCAATTTGTACCAAGACGGTGGCTCAACCTTTTCCTTGGGTTTCGAGCAGCAAGGTTCGATTGGGCTGAACCACCTTACCCCTTCCCAGATCCACCAGATCCAGGCCGAGATCCAGCTCCAGAATCAACCCCAGATGATGGCATGGCAGCAAAACTATCAGCAACAGCCATCACCATCCCACACGCTCAGCTTTCTCAGTCCCAAACCTGTTCCCATGAAGCAATCTGGTTCGCCGCCCAAGCCCACCAAGCTTTACCGGGGAGTGAGGCAGAGGCATTGGGGGAAATGGGTCGCCGAGATCCGGCTACCCAAGAACCGAACCCGCCTCTGGCTCGGCACTTTCGACACAGCTGAAGAAGCAGCCTTGGCTTATGACAAAGCAGCTTACAAGCTCCGTGGCGACTTTGCCCGCCTCAATTTCCCTCATTTGAAGCACACTGGCTCAGTTGTTGGTGGCGAGTTCGGCGAGTACAAGCCCCTGCATTCCTCTGTTGACGCGAAGCTTCAGGCCATCTGCGAAGGCTTGGCTGAGTCGCAGAAGCAGGGGAAGGCAGCGAAGCAGGCGGGTGCGGCCAAGAAATCATCGGCCGCCCGCTCGCAGCAGAAGCCGAAGTCAATACCGGTGCCTGAACCGGAGCCGGAACCGGAGGCTTTGACGGTGAAGATGGAGAGCTCCTCCTTGTCGCCCGTGATGACGGATAGTGATGGGTCTGCAGGGTCTTCTCCTCTATCGGATCTGACCTTTGCTGACTGCTCAGAGTCCTCATCGCCCTGGGAGAACTGCGGAACGGAGAGTTACATGTTGGAGAAGTATCCATCCGAGATTGATTGGGCTTCGATCTTCAATCAAAATTCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033554 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045595 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071369 GO:0071470 GO:0071472 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

384

Amino Acids

41.74

Weight (kDa)

6.01

Isoelectric Point (pI)

72.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	181 - 230	5.6e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78080
fragaria_vesca	FvH4_5g37820
malus_domestica	MD08G1180200.v1.1 MD15G1365500.v1.1
prunus_persica	Prupe.1G513600_v2.0.a1 Prupe.3G009400_v2.0.a1
pyrus_communis	pycom08g15420 pycom15g32790
rosa_chinensis	RchiOBHm_Chr7g0239701
rosa_laevigata	RLG00000000738
rosa_multiflora	Rmu_sc0000063.1_g000026
rosa_roxburghii	Rroxscaffold_3G00220810
rosa_samantha	Rh7AG483000 Rh7BG455900 Rh7CG500600 Rh7DG468800
rosa_wichuraiana	Rw7G040430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	913
AccB7I	CCANNNNNTGG	1 cut(s)	427
AccBSI	CCGCTC	1 cut(s)	885
AccII	CGCG	1 cut(s)	788
AclWI	GGATC	8 cut(s)	44, 57, 268, 373, 382, 394, 583, 1032
AcoI	YGGCCR	2 cut(s)	861, 876
AcsI	RAATTY	1 cut(s)	1141
AcuI	CTGAAG	3 cut(s)	20, 663, 779
AfaI	GTAC	2 cut(s)	299, 761
AfiI	CCNNNNNNNGG	5 cut(s)	59, 391, 427, 591, 618
AflIII	ACRYGT	2 cut(s)	255, 1089
AgeI	ACCGGT	1 cut(s)	910
AgsI	TTSAA	6 cut(s)	83, 160, 204, 721, 1135, 1146
AjnI	CCWGG	2 cut(s)	390, 1061
Alw21I	GWGCWC	2 cut(s)	69, 965
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	8 cut(s)	44, 57, 268, 373, 382, 394, 583, 1032
AoxI	GGCC	4 cut(s)	393, 798, 861, 876
ApeKI	GCWGC	8 cut(s)	5, 286, 337, 436, 650, 671, 842, 889
ApoI	RAATTY	1 cut(s)	1141
AsiGI	ACCGGT	1 cut(s)	910
AsuC2I	CCSGG	1 cut(s)	548
AsuHPI	GGTGA	3 cut(s)	74, 453, 961
BamHI	GGATCC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	913
BanII	GRGCYC	2 cut(s)	69, 965
BbsI	GAAGAC	2 cut(s)	177, 1002
Bbv12I	GWGCWC	2 cut(s)	69, 965
BbvI	GCAGC	8 cut(s)	17, 298, 349, 448, 662, 683, 854, 901
BccI	CCATC	8 cut(s)	187, 421, 466, 472, 809, 949, 989, 1114
BciT130I	CCWGG	2 cut(s)	392, 1063
BciVI	GTATCC	1 cut(s)	1113
BcnI	CCSGG	1 cut(s)	548
BcoDI	GTCTC	1 cut(s)	108
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	1002
BfuI	GTATCC	1 cut(s)	1113
BlpI	GCTNAGC	1 cut(s)	476
Bme1390I	CCNGG	3 cut(s)	392, 548, 1063
BmiI	GGNNCC	4 cut(s)	51, 915, 927, 933
BmrFI	CCNGG	3 cut(s)	392, 548, 1063
BpiI	GAAGAC	2 cut(s)	177, 1002
BplI	GAGNNNNNCTC	2 cut(s)	950, 982
BpmI	CTGGAG	1 cut(s)	392
Bpu1102I	GCTNAGC	1 cut(s)	476
BpuMI	CCSGG	1 cut(s)	548
BsaJI	CCNNGG	6 cut(s)	324, 547, 654, 685, 1061, 1062
BsaWI	WCCGGW	3 cut(s)	910, 922, 934
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	5 cut(s)	59, 391, 427, 591, 618
Bse118I	RCCGGY	1 cut(s)	910
Bse1I	ACTGG	1 cut(s)	733
BseBI	CCWGG	2 cut(s)	392, 1063
BseDI	CCNNGG	6 cut(s)	324, 547, 654, 685, 1061, 1062
BseGI	GGATG	2 cut(s)	464, 1106
BseLI	CCNNNNNNNGG	5 cut(s)	59, 391, 427, 591, 618
BseMII	CTCAG	5 cut(s)	490, 499, 747, 810, 1059
BseNI	ACTGG	1 cut(s)	733
BseRI	GAGGAG	2 cut(s)	955, 1005
BseX3I	CGGCCG	1 cut(s)	876
BseXI	GCAGC	8 cut(s)	17, 298, 349, 448, 662, 683, 854, 901
Bsh1236I	CGCG	1 cut(s)	788
Bsh1285I	CGRYCG	1 cut(s)	879
BshFI	GGCC	4 cut(s)	395, 800, 863, 878
BshNI	GGYRCC	1 cut(s)	913
BshTI	ACCGGT	1 cut(s)	910
BsiEI	CGRYCG	1 cut(s)	879
BsiHKAI	GWGCWC	2 cut(s)	69, 965
BsiSI	CCGG	6 cut(s)	547, 592, 911, 923, 929, 935
BslFI	GGGAC	1 cut(s)	474
BslI	CCNNNNNNNGG	5 cut(s)	59, 391, 427, 591, 618
BsmAI	GTCTC	1 cut(s)	108
BsmBI	CGTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	474
BsmI	GAATGC	1 cut(s)	772
BsnI	GGCC	4 cut(s)	395, 800, 863, 878
Bsp1286I	GDGCHC	2 cut(s)	69, 965
Bsp143I	GATC	8 cut(s)	49, 273, 378, 387, 399, 588, 1024, 1128
Bsp1720I	GCTNAGC	1 cut(s)	476
BspANI	GGCC	4 cut(s)	395, 800, 863, 878
BspCNI	CTCAG	5 cut(s)	489, 498, 746, 811, 1058
BspFNI	CGCG	1 cut(s)	788
BspLI	GGNNCC	4 cut(s)	51, 915, 927, 933
BspMAI	CTGCAG	1 cut(s)	1006
BspPI	GGATC	8 cut(s)	44, 57, 268, 373, 382, 394, 583, 1032
BspT107I	GGYRCC	1 cut(s)	913
BsrBI	CCGCTC	1 cut(s)	885
BsrFI	RCCGGY	1 cut(s)	910
BsrI	ACTGG	1 cut(s)	733
BssAI	RCCGGY	1 cut(s)	910
BssECI	CCNNGG	6 cut(s)	324, 547, 654, 685, 1061, 1062
BssMI	GATC	8 cut(s)	49, 273, 378, 387, 399, 588, 1024, 1128
BssT1I	CCWWGG	2 cut(s)	324, 654
Bst2UI	CCWGG	2 cut(s)	392, 1063
Bst4CI	ACNGT	2 cut(s)	308, 949
Bst6I	CTCTTC	1 cut(s)	39
BstC8I	GCNNGC	4 cut(s)	700, 852, 883, 887
BstDEI	CTNAG	5 cut(s)	476, 485, 733, 819, 1045
BstDSI	CCRYGG	1 cut(s)	685
BstF5I	GGATG	2 cut(s)	464, 1106
BstFNI	CGCG	1 cut(s)	788
BstKTI	GATC	8 cut(s)	52, 276, 381, 390, 402, 591, 1027, 1131
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	8 cut(s)	49, 273, 378, 387, 399, 588, 1024, 1128
BstMCI	CGRYCG	1 cut(s)	879
BstMWI	GCNNNNNNNGC	8 cut(s)	529, 538, 647, 656, 753, 851, 860, 895
BstNI	CCWGG	2 cut(s)	392, 1063
BstNSI	RCATGY	2 cut(s)	259, 1093
BstSCI	CCNGG	3 cut(s)	390, 546, 1061
BstSFI	CTRYAG	1 cut(s)	1002
BstUI	CGCG	1 cut(s)	788
BstV1I	GCAGC	8 cut(s)	17, 298, 349, 448, 662, 683, 854, 901
BstV2I	GAAGAC	2 cut(s)	177, 1002
BstX2I	RGATCY	6 cut(s)	49, 378, 387, 399, 588, 1024
BstXI	CCANNNNNNTGG	1 cut(s)	308
BstYI	RGATCY	6 cut(s)	49, 378, 387, 399, 588, 1024
BstZI	CGGCCG	1 cut(s)	876
BsuI	GTATCC	1 cut(s)	1113
BsuRI	GGCC	4 cut(s)	395, 800, 863, 878
BtgI	CCRYGG	1 cut(s)	685
BtgZI	GCGATG	1 cut(s)	1041
BtsCI	GGATG	2 cut(s)	464, 1106
BtsIMutI	CAGTG	1 cut(s)	726
Cac8I	GCNNGC	4 cut(s)	700, 852, 883, 887
Cfr10I	RCCGGY	1 cut(s)	910
CseI	GACGC	2 cut(s)	90, 794
Csp6I	GTAC	2 cut(s)	298, 760
CspAI	ACCGGT	1 cut(s)	910
CspCI	CAANNNNNGTGG	2 cut(s)	667, 702
CviAII	CATG	5 cut(s)	70, 256, 432, 505, 1090
CviQI	GTAC	2 cut(s)	298, 760
DdeI	CTNAG	5 cut(s)	476, 485, 733, 819, 1045
DpnI	GATC	8 cut(s)	51, 275, 380, 389, 401, 590, 1026, 1130
DpnII	GATC	8 cut(s)	49, 273, 378, 387, 399, 588, 1024, 1128
EaeI	YGGCCR	2 cut(s)	861, 876
EagI	CGGCCG	1 cut(s)	876
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	2 cut(s)	67, 963
EclXI	CGGCCG	1 cut(s)	876
Eco130I	CCWWGG	2 cut(s)	324, 654
Eco24I	GRGCYC	2 cut(s)	69, 965
Eco32I	GATATC	1 cut(s)	16
Eco52I	CGGCCG	1 cut(s)	876
Eco53kI	GAGCTC	2 cut(s)	67, 963
Eco57I	CTGAAG	3 cut(s)	20, 663, 779
EcoICRI	GAGCTC	2 cut(s)	67, 963
EcoRII	CCWGG	2 cut(s)	390, 1061
EcoRV	GATATC	1 cut(s)	16
EcoT14I	CCWWGG	2 cut(s)	324, 654
EcoT38I	GRGCYC	2 cut(s)	69, 965
ErhI	CCWWGG	2 cut(s)	324, 654
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	5 cut(s)	73, 259, 435, 508, 1093
FaiI	YATR	8 cut(s)	11, 71, 92, 257, 433, 506, 663, 1091
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	5 cut(s)	69, 255, 431, 504, 1089
FauI	CCCGC	5 cut(s)	291, 620, 707, 847, 890
FokI	GGATG	2 cut(s)	451, 1093
FriOI	GRGCYC	2 cut(s)	69, 965
FspBI	CTAG	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	4 cut(s)	395, 800, 863, 878
HapII	CCGG	6 cut(s)	547, 592, 911, 923, 929, 935
HgaI	GACGC	2 cut(s)	90, 794
Hin1II	CATG	5 cut(s)	73, 259, 435, 508, 1093
HincII	GTYRAC	1 cut(s)	784
HindII	GTYRAC	1 cut(s)	784
HindIII	AAGCTT	2 cut(s)	539, 791
HinfI	GANTC	3 cut(s)	412, 821, 1049
HpaII	CCGG	6 cut(s)	547, 592, 911, 923, 929, 935
HphI	GGTGA	3 cut(s)	74, 453, 961
Hpy166II	GTNNAC	1 cut(s)	784
Hpy188I	TCNGA	5 cut(s)	49, 1024, 1029, 1048, 1111
Hpy188III	TCNNGA	1 cut(s)	409
Hpy8I	GTNNAC	1 cut(s)	784
HpyAV	CCTTC	9 cut(s)	126, 153, 174, 237, 243, 279, 381, 803, 832
HpyCH4III	ACNGT	2 cut(s)	308, 949
HpyCH4V	TGCA	2 cut(s)	772, 1004
HpyF10VI	GCNNNNNNNGC	8 cut(s)	529, 538, 647, 656, 753, 851, 860, 895
HpyF3I	CTNAG	5 cut(s)	476, 485, 733, 819, 1045
Hsp92II	CATG	5 cut(s)	73, 259, 435, 508, 1093
Kzo9I	GATC	8 cut(s)	49, 273, 378, 387, 399, 588, 1024, 1128
LmnI	GCTCC	4 cut(s)	411, 687, 925, 968
Lsp1109I	GCAGC	8 cut(s)	17, 298, 349, 448, 662, 683, 854, 901
MaeI	CTAG	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	1085
MalI	GATC	8 cut(s)	51, 275, 380, 389, 401, 590, 1026, 1130
MbiI	CCGCTC	1 cut(s)	885
MboI	GATC	8 cut(s)	49, 273, 378, 387, 399, 588, 1024, 1128
MflI	RGATCY	6 cut(s)	49, 378, 387, 399, 588, 1024
MhlI	GDGCHC	2 cut(s)	69, 965
MluCI	AATT	4 cut(s)	292, 706, 1141, 1147
MlyI	GAGTC	2 cut(s)	830, 1058
MmeI	TCCRAC	1 cut(s)	1074
MseI	TTAA	1 cut(s)	1150
MspA1I	CMGCKG	1 cut(s)	641
MspI	CCGG	6 cut(s)	547, 592, 911, 923, 929, 935
MspR9I	CCNGG	3 cut(s)	392, 548, 1063
Mva1269I	GAATGC	1 cut(s)	772
MvaI	CCWGG	2 cut(s)	392, 1063
MvnI	CGCG	1 cut(s)	788
MwoI	GCNNNNNNNGC	8 cut(s)	529, 538, 647, 656, 753, 851, 860, 895
NciI	CCSGG	1 cut(s)	548
NdeII	GATC	8 cut(s)	49, 273, 378, 387, 399, 588, 1024, 1128
NlaIII	CATG	5 cut(s)	73, 259, 435, 508, 1093
NlaIV	GGNNCC	4 cut(s)	51, 915, 927, 933
NmeAIII	GCCGAG	3 cut(s)	421, 603, 610
NspI	RCATGY	2 cut(s)	259, 1093
PasI	CCCWGGG	1 cut(s)	1062
PciI	ACATGT	2 cut(s)	255, 1089
PcsI	WCGNNNNNNNCGW	1 cut(s)	630
PctI	GAATGC	1 cut(s)	772
PfeI	GAWTC	1 cut(s)	412
PflMI	CCANNNNNTGG	1 cut(s)	427
PinAI	ACCGGT	1 cut(s)	910
PleI	GAGTC	2 cut(s)	829, 1057
PpsI	GAGTC	2 cut(s)	829, 1057
PscI	ACATGT	2 cut(s)	255, 1089
Psp124BI	GAGCTC	2 cut(s)	69, 965
Psp6I	CCWGG	2 cut(s)	390, 1061
PspGI	CCWGG	2 cut(s)	390, 1061
PspN4I	GGNNCC	4 cut(s)	51, 915, 927, 933
PstI	CTGCAG	1 cut(s)	1006
PsuI	RGATCY	6 cut(s)	49, 378, 387, 399, 588, 1024
PvuII	CAGCTG	1 cut(s)	641
RsaI	GTAC	2 cut(s)	299, 761
RsaNI	GTAC	2 cut(s)	298, 760
SacI	GAGCTC	2 cut(s)	69, 965
SaqAI	TTAA	1 cut(s)	1150
Sau3AI	GATC	8 cut(s)	49, 273, 378, 387, 399, 588, 1024, 1128
SchI	GAGTC	2 cut(s)	830, 1058
ScrFI	CCNGG	3 cut(s)	392, 548, 1063
SduI	GDGCHC	2 cut(s)	69, 965
SfcI	CTRYAG	1 cut(s)	1002
Sse9I	AATT	4 cut(s)	292, 706, 1141, 1147
SspMI	CTAG	1 cut(s)	24
SstI	GAGCTC	2 cut(s)	69, 965
StyD4I	CCNGG	3 cut(s)	390, 546, 1061
StyI	CCWWGG	2 cut(s)	324, 654
TaaI	ACNGT	2 cut(s)	308, 949
TaqI	TCGA	5 cut(s)	272, 333, 347, 633, 1127
TasI	AATT	4 cut(s)	292, 706, 1141, 1147
TatI	WGTACW	1 cut(s)	759
TauI	GCSGC	3 cut(s)	526, 863, 881
TfiI	GAWTC	1 cut(s)	412
Tru1I	TTAA	1 cut(s)	1150
Tru9I	TTAA	1 cut(s)	1150
TscAI	CASTG	1 cut(s)	733
TseI	GCWGC	8 cut(s)	5, 286, 337, 436, 650, 671, 842, 889
TspDTI	ATGAA	2 cut(s)	107, 521
TspGWI	ACGGA	3 cut(s)	674, 1001, 1094
TspRI	CASTG	1 cut(s)	733
Van91I	CCANNNNNTGG	1 cut(s)	427
XapI	RAATTY	1 cut(s)	1141
XceI	RCATGY	2 cut(s)	259, 1093
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.