Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013977

Physical Location & Seq

Genomic Coordinates Forward (+)

44299622 .. 44300719

Gene Structure 1098 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1365500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCAACTACAATGGATTTCTACAGTAGCAGAGCAGCTTTTCAATCATCATCAGATCCCTTCGGAGGTGAGCTGATGGAAGCACTTGAGCCTTTTATGAAAAGTGCTTCTTCATCGCCGCCGCCGCCGTCTTCCCTCCCCACCACCGCCACGTCTCCTCCTTCCTTCGCCCCTTTCCTTCCCTCTTTCCCTTCTTCCTCCTCCTCCTACGACTTCCTCTCTTCCTCAAACCAGCCCAGTTTCTACGATTACGGTTGCTCCACCTCCTCCATGACCCAATTGTTTTCAGATGGGTTATTTGAGAAGCACCACCAGCAACTGCCGTCAATCGGGCTGAACCACCTGACCCCCTCCCAGATCCACCAAATCCAAGCCCAGATCCAGTCCCAATCCCAATCCCAATCCCAACCCCAACAAACCCAAATCTCTTGGGAAAACCACCACCAACAAGTTTCTCAGCCGTCGTCTCATACTCTCAGCTTCCTCGGCCCCAAACCCGTCTTGATGAAGCAGGTGGGCTCCTCCGGTTCGCCGCCGAAACCCACCAAGCTTTACAGGGGTGTCAGGCAACGCCACTGGGGCAAATGGGTCGCTGAGATTAGGCTCCCTAAGAACCGCACCAGGCTCTGGCTAGGAACTTTCGACACGGCGGAGGAAGCTGCTCTGGCTTACGACAAGGCAGCTTACAAGCTCAGAGGCGACTTCGCCAGGCTCAATTTCCCGCACCTCCGCCACAATGGGTCAGTCGTCGGAGGCGAGTTCGGCGAGTACAAGCCTCTGCATGCTTCTGTCGACGCCAAGCTTCAAGCCATCTGCGAAGGCTTGGCCGAAACTCAGAAACAGGGCAAGGCAGCGAAGCCCGCCAAGAGGTCATCCGCTGCAGCGAGCCGACAGCCGGCCCCGGAGACTTTGGCCGTCAAGGTTGAAACCTCGTCGCCGGTGATGACTGATAGCGAGGGGTCTGCCGGGTCTTCGCCGCTTTCCGATCTGACTTTCGGCGACTCTACGGAGCCGTGGGAGAACAGCGGCGCTTCCGAGAGCACTGCCGTGTTAGAGAAGTACCCGTCCGAGATTGATTGGGCTTCGATCTTCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033554 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045595 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071369 GO:0071470 GO:0071472 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

366

Amino Acids

39.64

Weight (kDa)

6.42

Isoelectric Point (pI)

67.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	184 - 233	5.3e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78080
fragaria_vesca	FvH4_5g37820
malus_domestica	MD08G1180200.v1.1 MD15G1365500.v1.1
prunus_persica	Prupe.1G513600_v2.0.a1 Prupe.3G009400_v2.0.a1
pyrus_communis	pycom08g15420 pycom15g32790
rosa_chinensis	RchiOBHm_Chr7g0239701
rosa_laevigata	RLG00000000738
rosa_multiflora	Rmu_sc0000063.1_g000026
rosa_roxburghii	Rroxscaffold_3G00220810
rosa_samantha	Rh7AG483000 Rh7BG455900 Rh7CG500600 Rh7DG468800
rosa_wichuraiana	Rw7G040430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	502
Acc36I	ACCTGC	1 cut(s)	502
AccB7I	CCANNNNNTGG	1 cut(s)	627
AccI	GTMKAC	1 cut(s)	792
AclWI	GGATC	3 cut(s)	50, 352, 373
AcoI	YGGCCR	2 cut(s)	825, 912
AcuI	CTGAAG	1 cut(s)	1075
AcyI	GRCGYC	1 cut(s)	795
AfaI	GTAC	2 cut(s)	770, 1061
AfiI	CCNNNNNNNGG	5 cut(s)	65, 329, 627, 867, 895
AgsI	TTSAA	3 cut(s)	44, 806, 926
AjiI	CACGTC	1 cut(s)	153
AjnI	CCWGG	2 cut(s)	620, 707
AleI	CACNNNNGTG	1 cut(s)	1046
AluBI	AGCT	8 cut(s)	38, 73, 480, 550, 659, 683, 691, 802
AluI	AGCT	8 cut(s)	38, 73, 480, 550, 659, 683, 691, 802
Alw21I	GWGCWC	1 cut(s)	1043
Alw26I	GTCTC	3 cut(s)	159, 471, 899
AlwI	GGATC	3 cut(s)	50, 352, 373
AlwNI	CAGNNNCTG	2 cut(s)	319, 627
AoxI	GGCC	4 cut(s)	487, 825, 897, 912
ApeKI	GCWGC	6 cut(s)	35, 659, 680, 851, 878, 881
AspLEI	GCGC	1 cut(s)	1031
AspS9I	GGNCC	2 cut(s)	488, 898
AsuC2I	CCSGG	2 cut(s)	902, 967
AsuHPI	GGTGA	2 cut(s)	80, 952
BanII	GRGCYC	1 cut(s)	521
BbsI	GAAGAC	2 cut(s)	123, 963
Bbv12I	GWGCWC	1 cut(s)	1043
BbvI	GCAGC	6 cut(s)	47, 646, 692, 863, 865, 893
BccI	CCATC	3 cut(s)	70, 284, 818
BceAI	ACGGC	7 cut(s)	112, 307, 445, 663, 899, 997, 1031
BcgI	CGANNNNNNTGC	6 cut(s)	571, 605, 944, 978, 1025, 1059
BciT130I	CCWGG	2 cut(s)	622, 709
BcnI	CCSGG	2 cut(s)	902, 967
BcoDI	GTCTC	3 cut(s)	159, 471, 899
BfaI	CTAG	1 cut(s)	632
BfmI	CTRYAG	2 cut(s)	22, 879
BfoI	RGCGCY	1 cut(s)	1032
BfuAI	ACCTGC	1 cut(s)	502
BglI	GCCNNNNNGGC	1 cut(s)	579
Bme1390I	CCNGG	4 cut(s)	622, 709, 902, 967
BmgBI	CACGTC	1 cut(s)	153
BmgT120I	GGNCC	2 cut(s)	488, 898
BmiI	GGNNCC	5 cut(s)	490, 520, 605, 900, 1011
BmrFI	CCNGG	4 cut(s)	622, 709, 902, 967
BmrI	ACTGGG	2 cut(s)	231, 586
BmuI	ACTGGG	2 cut(s)	231, 586
BpiI	GAAGAC	2 cut(s)	123, 963
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	2 cut(s)	902, 967
BsaHI	GRCGYC	1 cut(s)	795
BsaJI	CCNNGG	3 cut(s)	484, 900, 1013
BsaWI	WCCGGW	1 cut(s)	524
BsaXI	ACNNNNNCTCC	4 cut(s)	142, 172, 242, 272
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 329, 627, 867, 895
Bse118I	RCCGGY	2 cut(s)	895, 937
Bse1I	ACTGG	3 cut(s)	237, 382, 581
BseBI	CCWGG	2 cut(s)	622, 709
BseDI	CCNNGG	3 cut(s)	484, 900, 1013
BseGI	GGATG	1 cut(s)	872
BseLI	CCNNNNNNNGG	5 cut(s)	65, 329, 627, 867, 895
BseMII	CTCAG	5 cut(s)	470, 490, 585, 706, 848
BseNI	ACTGG	3 cut(s)	237, 382, 581
BseRI	GAGGAG	5 cut(s)	147, 190, 193, 256, 511
BseXI	GCAGC	6 cut(s)	47, 646, 692, 863, 865, 893
BshFI	GGCC	4 cut(s)	489, 827, 899, 914
BsiHKAI	GWGCWC	1 cut(s)	1043
BsiSI	CCGG	5 cut(s)	525, 896, 902, 938, 966
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	5 cut(s)	65, 329, 627, 867, 895
BsmAI	GTCTC	3 cut(s)	159, 471, 899
BsmBI	CGTCTC	2 cut(s)	159, 471
BsmFI	GGGAC	1 cut(s)	370
BsnI	GGCC	4 cut(s)	489, 827, 899, 914
Bsp1286I	GDGCHC	2 cut(s)	521, 1043
Bsp143I	GATC	5 cut(s)	55, 357, 378, 985, 1086
BspANI	GGCC	4 cut(s)	489, 827, 899, 914
BspCNI	CTCAG	5 cut(s)	469, 489, 586, 705, 847
BspLI	GGNNCC	5 cut(s)	490, 520, 605, 900, 1011
BspMAI	CTGCAG	1 cut(s)	883
BspMI	ACCTGC	1 cut(s)	502
BspPI	GGATC	3 cut(s)	50, 352, 373
BsrFI	RCCGGY	2 cut(s)	895, 937
BsrI	ACTGG	3 cut(s)	237, 382, 581
BssAI	RCCGGY	2 cut(s)	895, 937
BssECI	CCNNGG	3 cut(s)	484, 900, 1013
BssMI	GATC	5 cut(s)	55, 357, 378, 985, 1086
BssNI	GRCGYC	1 cut(s)	795
Bst2UI	CCWGG	2 cut(s)	622, 709
Bst4CI	ACNGT	2 cut(s)	26, 254
Bst6I	CTCTTC	1 cut(s)	226
BstACI	GRCGYC	1 cut(s)	795
BstC8I	GCNNGC	4 cut(s)	783, 861, 886, 897
BstDEI	CTNAG	6 cut(s)	456, 476, 594, 609, 692, 834
BstDSI	CCRYGG	1 cut(s)	1013
BstF5I	GGATG	1 cut(s)	872
BstH2I	RGCGCY	1 cut(s)	1032
BstHHI	GCGC	1 cut(s)	1031
BstKTI	GATC	5 cut(s)	58, 360, 381, 988, 1089
BstMAI	GTCTC	3 cut(s)	159, 471, 899
BstMBI	GATC	5 cut(s)	55, 357, 378, 985, 1086
BstMWI	GCNNNNNNNGC	8 cut(s)	124, 313, 486, 579, 656, 665, 762, 860
BstNI	CCWGG	2 cut(s)	622, 709
BstNSI	RCATGY	1 cut(s)	785
BstSCI	CCNGG	4 cut(s)	620, 707, 900, 965
BstSFI	CTRYAG	2 cut(s)	22, 879
BstV1I	GCAGC	6 cut(s)	47, 646, 692, 863, 865, 893
BstV2I	GAAGAC	2 cut(s)	123, 963
BstX2I	RGATCY	3 cut(s)	55, 357, 378
BstYI	RGATCY	3 cut(s)	55, 357, 378
BsuRI	GGCC	4 cut(s)	489, 827, 899, 914
BtgI	CCRYGG	1 cut(s)	1013
BtgZI	GCGATG	1 cut(s)	99
BtrI	CACGTC	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	872
BtsI	GCAGTG	1 cut(s)	1041
BtsIMutI	CAGTG	2 cut(s)	574, 1041
BveI	ACCTGC	1 cut(s)	502
Cac8I	GCNNGC	4 cut(s)	783, 861, 886, 897
CaiI	CAGNNNCTG	2 cut(s)	319, 627
CfoI	GCGC	1 cut(s)	1031
Cfr10I	RCCGGY	2 cut(s)	895, 937
Cfr13I	GGNCC	2 cut(s)	488, 898
CseI	GACGC	1 cut(s)	803
Csp6I	GTAC	2 cut(s)	769, 1060
CviAII	CATG	2 cut(s)	271, 782
CviQI	GTAC	2 cut(s)	769, 1060
DdeI	CTNAG	6 cut(s)	456, 476, 594, 609, 692, 834
DpnI	GATC	5 cut(s)	57, 359, 380, 987, 1088
DpnII	GATC	5 cut(s)	55, 357, 378, 985, 1086
EaeI	YGGCCR	2 cut(s)	825, 912
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
EciI	GGCGGA	2 cut(s)	665, 719
Eco24I	GRGCYC	1 cut(s)	521
Eco57I	CTGAAG	1 cut(s)	1075
EcoRII	CCWGG	2 cut(s)	620, 707
EcoT38I	GRGCYC	1 cut(s)	521
Esp3I	CGTCTC	2 cut(s)	159, 471
FaeI	CATG	2 cut(s)	274, 785
FaiI	YATR	4 cut(s)	98, 272, 471, 783
FalI	AAGNNNNNCTT	2 cut(s)	94, 126
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	2 cut(s)	270, 781
FauI	CCCGC	2 cut(s)	729, 868
FblI	GTMKAC	1 cut(s)	792
FokI	GGATG	1 cut(s)	859
FriOI	GRGCYC	1 cut(s)	521
FspBI	CTAG	1 cut(s)	632
GlaI	GCGC	1 cut(s)	1030
HaeII	RGCGCY	1 cut(s)	1032
HaeIII	GGCC	4 cut(s)	489, 827, 899, 914
HapII	CCGG	5 cut(s)	525, 896, 902, 938, 966
HgaI	GACGC	1 cut(s)	803
HhaI	GCGC	1 cut(s)	1031
Hin1I	GRCGYC	1 cut(s)	795
Hin1II	CATG	2 cut(s)	274, 785
Hin6I	GCGC	1 cut(s)	1029
HinP1I	GCGC	1 cut(s)	1029
HincII	GTYRAC	1 cut(s)	793
HindII	GTYRAC	1 cut(s)	793
HindIII	AAGCTT	2 cut(s)	548, 800
HinfI	GANTC	1 cut(s)	1001
HpaII	CCGG	5 cut(s)	525, 896, 902, 938, 966
HphI	GGTGA	2 cut(s)	80, 952
Hpy166II	GTNNAC	1 cut(s)	793
Hpy188III	TCNNGA	1 cut(s)	502
Hpy8I	GTNNAC	1 cut(s)	793
Hpy99I	CGWCG	4 cut(s)	466, 752, 797, 937
HpyAV	CCTTC	6 cut(s)	70, 171, 175, 188, 201, 812
HpyCH4III	ACNGT	2 cut(s)	26, 254
HpyCH4IV	ACGT	1 cut(s)	152
HpyCH4V	TGCA	2 cut(s)	781, 881
HpyF10VI	GCNNNNNNNGC	8 cut(s)	124, 313, 486, 579, 656, 665, 762, 860
HpyF3I	CTNAG	6 cut(s)	456, 476, 594, 609, 692, 834
HpySE526I	ACGT	1 cut(s)	152
Hsp92I	GRCGYC	1 cut(s)	795
Hsp92II	CATG	2 cut(s)	274, 785
HspAI	GCGC	1 cut(s)	1029
KroI	GCCGGC	1 cut(s)	895
KroNI	GCCGGC	1 cut(s)	897
Kzo9I	GATC	5 cut(s)	55, 357, 378, 985, 1086
LmnI	GCTCC	4 cut(s)	263, 524, 609, 1009
Lsp1109I	GCAGC	6 cut(s)	47, 646, 692, 863, 865, 893
MaeI	CTAG	1 cut(s)	632
MaeII	ACGT	1 cut(s)	152
MalI	GATC	5 cut(s)	57, 359, 380, 987, 1088
MboI	GATC	5 cut(s)	55, 357, 378, 985, 1086
MboII	GAAGA	6 cut(s)	102, 123, 186, 213, 963, 1081
MfeI	CAATTG	1 cut(s)	278
MflI	RGATCY	3 cut(s)	55, 357, 378
MhlI	GDGCHC	2 cut(s)	521, 1043
MluCI	AATT	2 cut(s)	278, 715
MlyI	GAGTC	1 cut(s)	995
MmeI	TCCRAC	1 cut(s)	730
MroNI	GCCGGC	1 cut(s)	895
MseI	TTAA	1 cut(s)	1096
MslI	CAYNNNNRTG	1 cut(s)	1046
MspA1I	CMGCKG	2 cut(s)	878, 1026
MspI	CCGG	5 cut(s)	525, 896, 902, 938, 966
MspR9I	CCNGG	4 cut(s)	622, 709, 902, 967
MunI	CAATTG	1 cut(s)	278
MvaI	CCWGG	2 cut(s)	622, 709
MwoI	GCNNNNNNNGC	8 cut(s)	124, 313, 486, 579, 656, 665, 762, 860
NaeI	GCCGGC	1 cut(s)	897
NciI	CCSGG	2 cut(s)	902, 967
NdeII	GATC	5 cut(s)	55, 357, 378, 985, 1086
NgoMIV	GCCGGC	1 cut(s)	895
NlaIII	CATG	2 cut(s)	274, 785
NlaIV	GGNNCC	5 cut(s)	490, 520, 605, 900, 1011
NmeAIII	GCCGAG	1 cut(s)	465
NspI	RCATGY	1 cut(s)	785
OliI	CACNNNNGTG	1 cut(s)	1046
PaeI	GCATGC	1 cut(s)	785
PaqCI	CACCTGC	1 cut(s)	502
PcsI	WCGNNNNNNNCGW	1 cut(s)	753
PdiI	GCCGGC	1 cut(s)	897
PflMI	CCANNNNNTGG	1 cut(s)	627
PleI	GAGTC	1 cut(s)	995
PpsI	GAGTC	1 cut(s)	995
Psp6I	CCWGG	2 cut(s)	620, 707
PspGI	CCWGG	2 cut(s)	620, 707
PspN4I	GGNNCC	5 cut(s)	490, 520, 605, 900, 1011
PspPI	GGNCC	2 cut(s)	488, 898
PstI	CTGCAG	1 cut(s)	883
PstNI	CAGNNNCTG	2 cut(s)	319, 627
PsuI	RGATCY	3 cut(s)	55, 357, 378
RsaI	GTAC	2 cut(s)	770, 1061
RsaNI	GTAC	2 cut(s)	769, 1060
RseI	CAYNNNNRTG	1 cut(s)	1046
SalI	GTCGAC	1 cut(s)	791
SaqAI	TTAA	1 cut(s)	1096
Sau3AI	GATC	5 cut(s)	55, 357, 378, 985, 1086
Sau96I	GGNCC	2 cut(s)	488, 898
SchI	GAGTC	1 cut(s)	995
ScrFI	CCNGG	4 cut(s)	622, 709, 902, 967
SduI	GDGCHC	2 cut(s)	521, 1043
SfcI	CTRYAG	2 cut(s)	22, 879
SgrAI	CRCCGGYG	1 cut(s)	937
SmiMI	CAYNNNNRTG	1 cut(s)	1046
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SphI	GCATGC	1 cut(s)	785
Sse9I	AATT	2 cut(s)	278, 715
SspMI	CTAG	1 cut(s)	632
StyD4I	CCNGG	4 cut(s)	620, 707, 900, 965
TaaI	ACNGT	2 cut(s)	26, 254
TaiI	ACGT	1 cut(s)	155
TaqI	TCGA	3 cut(s)	642, 792, 1085
TasI	AATT	2 cut(s)	278, 715
TatI	WGTACW	1 cut(s)	768
TauI	GCSGC	6 cut(s)	121, 124, 127, 535, 979, 1029
Tru1I	TTAA	1 cut(s)	1096
Tru9I	TTAA	1 cut(s)	1096
TscAI	CASTG	2 cut(s)	581, 1048
TseI	GCWGC	6 cut(s)	35, 659, 680, 851, 878, 881
TspDTI	ATGAA	3 cut(s)	102, 113, 521
TspGWI	ACGGA	1 cut(s)	1022
TspRI	CASTG	2 cut(s)	581, 1048
Van91I	CCANNNNNTGG	1 cut(s)	627
XceI	RCATGY	1 cut(s)	785
XmiI	GTMKAC	1 cut(s)	792
XspI	CTAG	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.