Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013977

Physical Location & Seq

Genomic Coordinates Forward (+)

593434 .. 594099

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G009400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAAGCAGGTGTTTTCTTCTGGTTCGCCGCCAAAACCCACCAAGCTTTACAGGGGTGTAAGGCAACGTCATTGGGGCAAATGGGTCGCTGAGATCAGGCTCCCAAAGAACCGCACCAGGCTTTGGCTTGGCACCTTCGACACAGCTGAAGAAGCCGCCTTGGCCTACGACAAGGCAGCTTACAAGCTCAGAGGAGACTTCGCTAGGCTCAATTTCCCACACCTCAGGCACAACGGCTCTTCCGTTGGAGGCGATTTCGGTGAGTACAAGCCTCTGCACTCCGTTGACGCCAAGCTTCAAGCCATCTGCGAAGGCTTGGCTGAAACCCAGAAACAGGGGAAGGCAGCAGGAAAGCCCAGCAAGAGGTCCTCCGCCGCCCGAGCTCCAGCGCCGCCGCCGGAGGTGAAGGTGGAGACCTCCTCGTCGCCGGTGATGACTGATAGCGACGGGTCTGCTGGTTTGGCTACAATCCCCATCACTGGTACTGGAATCAACCCAGCAAGGAGCTTTGGTCCTGCTGTGATTTTCAACAACGAAAAAGCCTGGGATGACCAGTGGATCTTCTGGGTTGGGCCATTTGTTGGAGCTCTGGCTGCAGCTGCATACCACCAGTACATTCTCAGAGCAGCAGGGCAGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033554 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045595 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071369 GO:0071470 GO:0071472 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

214

Amino Acids

23.1

Weight (kDa)

9.79

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78080
fragaria_vesca	FvH4_5g37820
malus_domestica	MD08G1180200.v1.1 MD15G1365500.v1.1
prunus_persica	Prupe.1G513600_v2.0.a1 Prupe.3G009400_v2.0.a1
pyrus_communis	pycom08g15420 pycom15g32790
rosa_chinensis	RchiOBHm_Chr7g0239701
rosa_laevigata	RLG00000000738
rosa_multiflora	Rmu_sc0000063.1_g000026
rosa_roxburghii	Rroxscaffold_3G00220810
rosa_samantha	Rh7AG483000 Rh7BG455900 Rh7CG500600 Rh7DG468800
rosa_wichuraiana	Rw7G040430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	421
AccB1I	GGYRCC	1 cut(s)	131
AccB7I	CCANNNNNTGG	2 cut(s)	123, 581
AciI	CCGC	7 cut(s)	29, 112, 156, 372, 375, 392, 395
AclWI	GGATC	1 cut(s)	566
AcuI	CTGAAG	1 cut(s)	168
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	3 cut(s)	266, 484, 614
AfiI	CCNNNNNNNGG	5 cut(s)	123, 334, 363, 479, 581
AgsI	TTSAA	2 cut(s)	299, 529
AjnI	CCWGG	2 cut(s)	116, 542
AluBI	AGCT	9 cut(s)	46, 146, 179, 187, 295, 383, 507, 587, 599
AluI	AGCT	9 cut(s)	46, 146, 179, 187, 295, 383, 507, 587, 599
Alw21I	GWGCWC	2 cut(s)	385, 589
Alw26I	GTCTC	2 cut(s)	189, 407
AlwI	GGATC	1 cut(s)	566
Ama87I	CYCGRG	1 cut(s)	378
AoxI	GGCC	2 cut(s)	162, 572
ApeKI	GCWGC	7 cut(s)	176, 344, 593, 596, 599, 626, 634
AspLEI	GCGC	1 cut(s)	391
AspS9I	GGNCC	3 cut(s)	366, 512, 572
AsuHPI	GGTGA	3 cut(s)	272, 415, 442
AvaI	CYCGRG	1 cut(s)	378
AvaII	GGWCC	2 cut(s)	366, 512
AxyI	CCTNAGG	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	131
BanII	GRGCYC	2 cut(s)	385, 589
Bbv12I	GWGCWC	2 cut(s)	385, 589
BbvI	GCAGC	6 cut(s)	188, 356, 580, 586, 608, 638
BccI	CCATC	2 cut(s)	311, 482
BceAI	ACGGC	1 cut(s)	250
BcgI	CGANNNNNNTGC	4 cut(s)	67, 101, 434, 468
BciT130I	CCWGG	2 cut(s)	118, 544
BcoDI	GTCTC	2 cut(s)	189, 407
BfaI	CTAG	1 cut(s)	204
BfmI	CTRYAG	1 cut(s)	594
BfoI	RGCGCY	1 cut(s)	392
BglI	GCCNNNNNGGC	1 cut(s)	161
Bme1390I	CCNGG	2 cut(s)	118, 544
Bme18I	GGWCC	2 cut(s)	366, 512
BmeT110I	CYCGRG	1 cut(s)	378
BmgT120I	GGNCC	3 cut(s)	366, 512, 572
BmiI	GGNNCC	2 cut(s)	101, 133
BmrFI	CCNGG	2 cut(s)	118, 544
BplI	GAGNNNNNCTC	2 cut(s)	404, 436
BpmI	CTGGAG	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	2 cut(s)	159, 543
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bsc4I	CCNNNNNNNGG	5 cut(s)	123, 334, 363, 479, 581
Bse118I	RCCGGY	1 cut(s)	427
Bse1I	ACTGG	4 cut(s)	484, 490, 553, 610
Bse21I	CCTNAGG	1 cut(s)	224
BseBI	CCWGG	2 cut(s)	118, 544
BseDI	CCNNGG	2 cut(s)	159, 543
BseGI	GGATG	1 cut(s)	553
BseLI	CCNNNNNNNGG	5 cut(s)	123, 334, 363, 479, 581
BseMII	CTCAG	4 cut(s)	81, 202, 238, 634
BseNI	ACTGG	4 cut(s)	484, 490, 553, 610
BseRI	GAGGAG	2 cut(s)	207, 409
BseXI	GCAGC	6 cut(s)	188, 356, 580, 586, 608, 638
BseYI	CCCAGC	2 cut(s)	356, 496
BsgI	GTGCAG	1 cut(s)	260
BshFI	GGCC	2 cut(s)	164, 574
BshNI	GGYRCC	1 cut(s)	131
BsiHKAI	GWGCWC	2 cut(s)	385, 589
BsiHKCI	CYCGRG	1 cut(s)	378
BsiSI	CCGG	2 cut(s)	398, 428
BslI	CCNNNNNNNGG	5 cut(s)	123, 334, 363, 479, 581
BsmAI	GTCTC	2 cut(s)	189, 407
BsnI	GGCC	2 cut(s)	164, 574
Bso31I	GGTCTC	1 cut(s)	407
BsoBI	CYCGRG	1 cut(s)	378
Bsp1286I	GDGCHC	2 cut(s)	385, 589
Bsp143I	GATC	2 cut(s)	93, 558
BspACI	CCGC	7 cut(s)	29, 112, 156, 372, 375, 392, 395
BspANI	GGCC	2 cut(s)	164, 574
BspCNI	CTCAG	4 cut(s)	82, 201, 237, 633
BspLI	GGNNCC	2 cut(s)	101, 133
BspMAI	CTGCAG	1 cut(s)	598
BspPI	GGATC	1 cut(s)	566
BspQI	GCTCTTC	1 cut(s)	244
BspT107I	GGYRCC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	407
BsrFI	RCCGGY	1 cut(s)	427
BsrI	ACTGG	4 cut(s)	484, 490, 553, 610
BssAI	RCCGGY	1 cut(s)	427
BssECI	CCNNGG	2 cut(s)	159, 543
BssMI	GATC	2 cut(s)	93, 558
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	2 cut(s)	118, 544
Bst6I	CTCTTC	1 cut(s)	244
BstACI	GRCGYC	1 cut(s)	288
BstDEI	CTNAG	4 cut(s)	90, 188, 224, 620
BstF5I	GGATG	1 cut(s)	553
BstH2I	RGCGCY	1 cut(s)	392
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	2 cut(s)	96, 561
BstMAI	GTCTC	2 cut(s)	189, 407
BstMBI	GATC	2 cut(s)	93, 558
BstMWI	GCNNNNNNNGC	6 cut(s)	152, 161, 380, 461, 593, 599
BstNI	CCWGG	2 cut(s)	118, 544
BstSCI	CCNGG	2 cut(s)	116, 542
BstSFI	CTRYAG	1 cut(s)	594
BstV1I	GCAGC	6 cut(s)	188, 356, 580, 586, 608, 638
BstX2I	RGATCY	1 cut(s)	558
BstYI	RGATCY	1 cut(s)	558
Bsu36I	CCTNAGG	1 cut(s)	224
BsuRI	GGCC	2 cut(s)	164, 574
BtsCI	GGATG	1 cut(s)	553
BtsIMutI	CAGTG	2 cut(s)	477, 560
CfoI	GCGC	1 cut(s)	391
Cfr10I	RCCGGY	1 cut(s)	427
Cfr13I	GGNCC	3 cut(s)	366, 512, 572
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	3 cut(s)	265, 483, 613
CviQI	GTAC	3 cut(s)	265, 483, 613
DdeI	CTNAG	4 cut(s)	90, 188, 224, 620
DpnI	GATC	2 cut(s)	95, 560
DpnII	GATC	2 cut(s)	93, 558
DrdI	GACNNNNNNGTC	1 cut(s)	421
DseDI	GACNNNNNNGTC	1 cut(s)	421
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
EciI	GGCGGA	1 cut(s)	361
Ecl136II	GAGCTC	2 cut(s)	383, 587
Eco130I	CCWWGG	1 cut(s)	159
Eco24I	GRGCYC	2 cut(s)	385, 589
Eco31I	GGTCTC	1 cut(s)	407
Eco47I	GGWCC	2 cut(s)	366, 512
Eco53kI	GAGCTC	2 cut(s)	383, 587
Eco57I	CTGAAG	1 cut(s)	168
Eco81I	CCTNAGG	1 cut(s)	224
Eco88I	CYCGRG	1 cut(s)	378
EcoICRI	GAGCTC	2 cut(s)	383, 587
EcoO109I	RGGNCCY	1 cut(s)	366
EcoRII	CCWGG	2 cut(s)	116, 542
EcoT14I	CCWWGG	1 cut(s)	159
EcoT38I	GRGCYC	2 cut(s)	385, 589
ErhI	CCWWGG	1 cut(s)	159
FaiI	YATR	1 cut(s)	604
FokI	GGATG	1 cut(s)	560
FriOI	GRGCYC	2 cut(s)	385, 589
FspBI	CTAG	1 cut(s)	204
GlaI	GCGC	1 cut(s)	390
GsaI	CCCAGC	2 cut(s)	360, 500
GsuI	CTGGAG	1 cut(s)	369
HaeII	RGCGCY	1 cut(s)	392
HaeIII	GGCC	2 cut(s)	164, 574
HapII	CCGG	2 cut(s)	398, 428
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	1 cut(s)	391
Hin1I	GRCGYC	1 cut(s)	288
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	2 cut(s)	44, 293
HinfI	GANTC	1 cut(s)	489
HpaII	CCGG	2 cut(s)	398, 428
HphI	GGTGA	3 cut(s)	272, 415, 442
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	2 cut(s)	191, 623
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	2 cut(s)	427, 449
HpyAV	CCTTC	4 cut(s)	145, 305, 334, 400
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	3 cut(s)	277, 596, 602
HpyF10VI	GCNNNNNNNGC	6 cut(s)	152, 161, 380, 461, 593, 599
HpyF3I	CTNAG	4 cut(s)	90, 188, 224, 620
HpySE526I	ACGT	1 cut(s)	67
Hsp92I	GRCGYC	1 cut(s)	288
HspAI	GCGC	1 cut(s)	389
Kzo9I	GATC	2 cut(s)	93, 558
LguI	GCTCTTC	1 cut(s)	244
LmnI	GCTCC	4 cut(s)	105, 388, 504, 584
Lsp1109I	GCAGC	6 cut(s)	188, 356, 580, 586, 608, 638
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	67
MalI	GATC	2 cut(s)	95, 560
MboI	GATC	2 cut(s)	93, 558
MboII	GAAGA	4 cut(s)	9, 161, 231, 553
MflI	RGATCY	1 cut(s)	558
MhlI	GDGCHC	2 cut(s)	385, 589
MluCI	AATT	1 cut(s)	211
MmeI	TCCRAC	2 cut(s)	226, 562
MnlI	CCTC	9 cut(s)	185, 233, 242, 282, 357, 379, 394, 427, 430
MspA1I	CMGCKG	2 cut(s)	146, 599
MspI	CCGG	2 cut(s)	398, 428
MspR9I	CCNGG	2 cut(s)	118, 544
MvaI	CCWGG	2 cut(s)	118, 544
MwoI	GCNNNNNNNGC	6 cut(s)	152, 161, 380, 461, 593, 599
NdeII	GATC	2 cut(s)	93, 558
NlaIV	GGNNCC	2 cut(s)	101, 133
PciSI	GCTCTTC	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	489
PflMI	CCANNNNNTGG	2 cut(s)	123, 581
PpuMI	RGGWCCY	1 cut(s)	366
Psp124BI	GAGCTC	2 cut(s)	385, 589
Psp5II	RGGWCCY	1 cut(s)	366
Psp6I	CCWGG	2 cut(s)	116, 542
PspFI	CCCAGC	2 cut(s)	356, 496
PspGI	CCWGG	2 cut(s)	116, 542
PspN4I	GGNNCC	2 cut(s)	101, 133
PspPI	GGNCC	3 cut(s)	366, 512, 572
PspPPI	RGGWCCY	1 cut(s)	366
PstI	CTGCAG	1 cut(s)	598
PsuI	RGATCY	1 cut(s)	558
PvuII	CAGCTG	2 cut(s)	146, 599
RsaI	GTAC	3 cut(s)	266, 484, 614
RsaNI	GTAC	3 cut(s)	265, 483, 613
SacI	GAGCTC	2 cut(s)	385, 589
SapI	GCTCTTC	1 cut(s)	244
Sau3AI	GATC	2 cut(s)	93, 558
Sau96I	GGNCC	3 cut(s)	366, 512, 572
ScrFI	CCNGG	2 cut(s)	118, 544
SduI	GDGCHC	2 cut(s)	385, 589
SfcI	CTRYAG	1 cut(s)	594
SgrAI	CRCCGGYG	1 cut(s)	427
SinI	GGWCC	2 cut(s)	366, 512
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	7 cut(s)	29, 112, 156, 372, 375, 392, 395
SspMI	CTAG	1 cut(s)	204
SstI	GAGCTC	2 cut(s)	385, 589
StyD4I	CCNGG	2 cut(s)	116, 542
StyI	CCWWGG	1 cut(s)	159
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	138
TasI	AATT	1 cut(s)	211
TatI	WGTACW	2 cut(s)	264, 612
TauI	GCSGC	5 cut(s)	31, 158, 377, 394, 397
TfiI	GAWTC	1 cut(s)	489
TscAI	CASTG	2 cut(s)	484, 560
TseI	GCWGC	7 cut(s)	176, 344, 593, 596, 599, 626, 634
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	232, 271
TspRI	CASTG	2 cut(s)	484, 560
Van91I	CCANNNNNTGG	2 cut(s)	123, 581
VpaK11BI	GGWCC	2 cut(s)	366, 512
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.