Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013977

Physical Location & Seq

Genomic Coordinates Forward (+)

32000419 .. 32001513

Gene Structure 1095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g32790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCAACTACAATGGATTTCTACAGTAGCGGAGCAGCTCTTCAATCATCATCAGATCCCTTCGGAGGTGAGCTGATGGAAGCACTTGAGCCTTTTATGAAAAGTGCTTCTTCATCGCCGCCGCCGCCTTCCCTCCCCACCACCACCACGTCTCCTCCTTCCTCGGCCCCTTTCCTTCCTTCTTTCCCTTCTACCTCCTCCTCCTCCTCCCACGACTTCCTCTCTTTCTCAAACCAGCCCAGTTTCTACGACGACGGTTGCTCCACCTCCTCCATGACCCAATTGTTTTCAGATGGGTTATTTGAGAAGCACCACCAGCAACTGCCGTCAATCGGGCTGAACCACCTCACCCCCTCCCAGATCCACCAGATCCAAGTCCAGATCCAGTCCCAATCCCATTCCCAACCCCAACAAACCCAAATCTCTTGGGAAAACCACCACCAACAAGTTTCTCAGCCGTCGTCTCATACTCTCAGCTTCCTTGGCCCCAAACCCGTCCTGATGAAGCAGGTGGGTTCCTCCGGTTCGCCGCCGAAACCCACCAAGCTTTACAGGGGTGTCAGGCAACGCCACTGGGGCAAATGGGTCGCTGAGATCAGGCTCCCTAAGAACCGTACCAGGCTCTGGCTAGGAACTTTCGACACGGCGGAGGAAGCCGCTTTGGCCTACGACAAGGCAGCTTACAAGCTCAGAGGCGACTTCGCCAGGCTCAATTTCCCGCACCTCCGCCACAGCGGGTCAGTCGTCGGAGGCGAGTTTGGCGAGTACAAGCCTCTGCATGCCTCAGTCGACGCCAAGCTTCAAGCCATCTGCGAAAGCTTGGCCGAAGCTCAGAAACAGGGCAAGGCAGGGAAGCCCGCCAAGAGGTCATCCGCCGCAGCCAGCCGACAGCCGGCCCCGGAGACTTTGGCCGTCAAGGTTGAAACCTCGTCGCCGGTGATGACTGATAGCGAGGGGTCTGCCGGGTCTTCGCCGCTGTCCGATCTGACTTTCGGCGACTCTACGGAGCCGTGGGAGAACAGCGGCGCTTGCGAGAGCACTGCCGTGTTGGAGAAGTACCCGTCCGAGATTGATTGGGCTTCGATCTTCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033554 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045595 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071369 GO:0071470 GO:0071472 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

365

Amino Acids

39.36

Weight (kDa)

6.22

Isoelectric Point (pI)

63.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	183 - 232	5.2e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78080
fragaria_vesca	FvH4_5g37820
malus_domestica	MD08G1180200.v1.1 MD15G1365500.v1.1
prunus_persica	Prupe.1G513600_v2.0.a1 Prupe.3G009400_v2.0.a1
pyrus_communis	pycom08g15420 pycom15g32790
rosa_chinensis	RchiOBHm_Chr7g0239701
rosa_laevigata	RLG00000000738
rosa_multiflora	Rmu_sc0000063.1_g000026
rosa_roxburghii	Rroxscaffold_3G00220810
rosa_samantha	Rh7AG483000 Rh7BG455900 Rh7CG500600 Rh7DG468800
rosa_wichuraiana	Rw7G040430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	499
Acc36I	ACCTGC	1 cut(s)	499
AccB7I	CCANNNNNTGG	1 cut(s)	624
AccI	GTMKAC	1 cut(s)	789
AclWI	GGATC	4 cut(s)	50, 355, 364, 376
AcoI	YGGCCR	2 cut(s)	822, 909
AcuI	CTGAAG	1 cut(s)	1072
AcyI	GRCGYC	1 cut(s)	792
AfaI	GTAC	3 cut(s)	616, 767, 1058
AfiI	CCNNNNNNNGG	5 cut(s)	65, 332, 624, 864, 892
AgsI	TTSAA	3 cut(s)	44, 803, 923
AjiI	CACGTC	1 cut(s)	150
AjnI	CCWGG	2 cut(s)	617, 704
AleI	CACNNNNGTG	1 cut(s)	1043
AluBI	AGCT	9 cut(s)	38, 73, 477, 547, 680, 688, 799, 819, 830
AluI	AGCT	9 cut(s)	38, 73, 477, 547, 680, 688, 799, 819, 830
Alw21I	GWGCWC	1 cut(s)	1040
Alw26I	GTCTC	3 cut(s)	156, 468, 896
AlwI	GGATC	4 cut(s)	50, 355, 364, 376
AlwNI	CAGNNNCTG	2 cut(s)	322, 624
AoxI	GGCC	6 cut(s)	165, 484, 663, 822, 894, 909
ApeKI	GCWGC	3 cut(s)	35, 677, 878
AspLEI	GCGC	1 cut(s)	1028
AspS9I	GGNCC	3 cut(s)	166, 485, 895
AsuC2I	CCSGG	2 cut(s)	899, 964
AsuHPI	GGTGA	3 cut(s)	80, 340, 949
BbsI	GAAGAC	1 cut(s)	960
Bbv12I	GWGCWC	1 cut(s)	1040
BbvI	GCAGC	3 cut(s)	47, 689, 890
BccI	CCATC	3 cut(s)	70, 287, 815
BceAI	ACGGC	6 cut(s)	310, 442, 660, 896, 994, 1028
BcgI	CGANNNNNNTGC	6 cut(s)	568, 602, 941, 975, 1022, 1056
BciT130I	CCWGG	2 cut(s)	619, 706
BcnI	CCSGG	2 cut(s)	899, 964
BcoDI	GTCTC	3 cut(s)	156, 468, 896
BfaI	CTAG	1 cut(s)	629
BfmI	CTRYAG	1 cut(s)	22
BfoI	RGCGCY	1 cut(s)	1029
BfuAI	ACCTGC	1 cut(s)	499
BglI	GCCNNNNNGGC	2 cut(s)	576, 662
Bme1390I	CCNGG	4 cut(s)	619, 706, 899, 964
BmgBI	CACGTC	1 cut(s)	150
BmgT120I	GGNCC	3 cut(s)	166, 485, 895
BmiI	GGNNCC	6 cut(s)	168, 487, 517, 602, 897, 1008
BmrFI	CCNGG	4 cut(s)	619, 706, 899, 964
BmrI	ACTGGG	2 cut(s)	234, 583
BmuI	ACTGGG	2 cut(s)	234, 583
BpiI	GAAGAC	1 cut(s)	960
BpuEI	CTTGAG	1 cut(s)	107
BpuMI	CCSGG	2 cut(s)	899, 964
BsaHI	GRCGYC	1 cut(s)	792
BsaJI	CCNNGG	4 cut(s)	162, 481, 897, 1010
BsaWI	WCCGGW	1 cut(s)	521
BsaXI	ACNNNNNCTCC	6 cut(s)	136, 139, 166, 169, 245, 275
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 332, 624, 864, 892
Bse118I	RCCGGY	2 cut(s)	892, 934
Bse1I	ACTGG	3 cut(s)	240, 385, 578
BseBI	CCWGG	2 cut(s)	619, 706
BseDI	CCNNGG	4 cut(s)	162, 481, 897, 1010
BseGI	GGATG	1 cut(s)	869
BseLI	CCNNNNNNNGG	5 cut(s)	65, 332, 624, 864, 892
BseMII	CTCAG	6 cut(s)	467, 487, 582, 703, 798, 845
BseNI	ACTGG	3 cut(s)	240, 385, 578
BseRI	GAGGAG	6 cut(s)	144, 187, 190, 193, 196, 259
BseXI	GCAGC	3 cut(s)	47, 689, 890
BshFI	GGCC	6 cut(s)	167, 486, 665, 824, 896, 911
BsiHKAI	GWGCWC	1 cut(s)	1040
BsiSI	CCGG	5 cut(s)	522, 893, 899, 935, 963
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	5 cut(s)	65, 332, 624, 864, 892
BsmAI	GTCTC	3 cut(s)	156, 468, 896
BsmBI	CGTCTC	2 cut(s)	156, 468
BsmFI	GGGAC	1 cut(s)	373
BsnI	GGCC	6 cut(s)	167, 486, 665, 824, 896, 911
Bsp1286I	GDGCHC	1 cut(s)	1040
Bsp143I	GATC	7 cut(s)	55, 360, 369, 381, 594, 982, 1083
BspANI	GGCC	6 cut(s)	167, 486, 665, 824, 896, 911
BspCNI	CTCAG	6 cut(s)	466, 486, 583, 702, 797, 844
BspLI	GGNNCC	6 cut(s)	168, 487, 517, 602, 897, 1008
BspMI	ACCTGC	1 cut(s)	499
BspPI	GGATC	4 cut(s)	50, 355, 364, 376
BspQI	GCTCTTC	1 cut(s)	45
BsrFI	RCCGGY	2 cut(s)	892, 934
BsrI	ACTGG	3 cut(s)	240, 385, 578
BssAI	RCCGGY	2 cut(s)	892, 934
BssECI	CCNNGG	4 cut(s)	162, 481, 897, 1010
BssMI	GATC	7 cut(s)	55, 360, 369, 381, 594, 982, 1083
BssNI	GRCGYC	1 cut(s)	792
BssT1I	CCWWGG	1 cut(s)	481
Bst2UI	CCWGG	2 cut(s)	619, 706
Bst4CI	ACNGT	3 cut(s)	26, 257, 614
Bst6I	CTCTTC	1 cut(s)	45
BstACI	GRCGYC	1 cut(s)	792
BstC8I	GCNNGC	5 cut(s)	780, 858, 883, 894, 1030
BstDEI	CTNAG	7 cut(s)	453, 473, 591, 606, 689, 784, 831
BstDSI	CCRYGG	1 cut(s)	1010
BstF5I	GGATG	1 cut(s)	869
BstH2I	RGCGCY	1 cut(s)	1029
BstHHI	GCGC	1 cut(s)	1028
BstKTI	GATC	7 cut(s)	58, 363, 372, 384, 597, 985, 1086
BstMAI	GTCTC	3 cut(s)	156, 468, 896
BstMBI	GATC	7 cut(s)	55, 360, 369, 381, 594, 982, 1083
BstMWI	GCNNNNNNNGC	8 cut(s)	124, 316, 483, 576, 653, 662, 759, 1029
BstNI	CCWGG	2 cut(s)	619, 706
BstNSI	RCATGY	1 cut(s)	782
BstSCI	CCNGG	4 cut(s)	617, 704, 897, 962
BstSFI	CTRYAG	1 cut(s)	22
BstV1I	GCAGC	3 cut(s)	47, 689, 890
BstV2I	GAAGAC	1 cut(s)	960
BstX2I	RGATCY	4 cut(s)	55, 360, 369, 381
BstYI	RGATCY	4 cut(s)	55, 360, 369, 381
BsuRI	GGCC	6 cut(s)	167, 486, 665, 824, 896, 911
BtgI	CCRYGG	1 cut(s)	1010
BtgZI	GCGATG	1 cut(s)	99
BtrI	CACGTC	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	869
BtsI	GCAGTG	1 cut(s)	1038
BtsIMutI	CAGTG	2 cut(s)	571, 1038
BveI	ACCTGC	1 cut(s)	499
Cac8I	GCNNGC	5 cut(s)	780, 858, 883, 894, 1030
CaiI	CAGNNNCTG	2 cut(s)	322, 624
CfoI	GCGC	1 cut(s)	1028
Cfr10I	RCCGGY	2 cut(s)	892, 934
Cfr13I	GGNCC	3 cut(s)	166, 485, 895
CseI	GACGC	1 cut(s)	800
Csp6I	GTAC	3 cut(s)	615, 766, 1057
CviAII	CATG	2 cut(s)	274, 779
CviQI	GTAC	3 cut(s)	615, 766, 1057
DdeI	CTNAG	7 cut(s)	453, 473, 591, 606, 689, 784, 831
DpnI	GATC	7 cut(s)	57, 362, 371, 383, 596, 984, 1085
DpnII	GATC	7 cut(s)	55, 360, 369, 381, 594, 982, 1083
EaeI	YGGCCR	2 cut(s)	822, 909
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
EciI	GGCGGA	3 cut(s)	662, 716, 862
Eco130I	CCWWGG	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	1072
EcoRII	CCWGG	2 cut(s)	617, 704
EcoT14I	CCWWGG	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	481
Esp3I	CGTCTC	2 cut(s)	156, 468
FaeI	CATG	2 cut(s)	277, 782
FaiI	YATR	4 cut(s)	98, 275, 468, 780
FalI	AAGNNNNNCTT	2 cut(s)	94, 126
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	2 cut(s)	273, 778
FauI	CCCGC	3 cut(s)	726, 728, 865
FblI	GTMKAC	1 cut(s)	789
FokI	GGATG	1 cut(s)	856
FspBI	CTAG	1 cut(s)	629
GlaI	GCGC	1 cut(s)	1027
HaeII	RGCGCY	1 cut(s)	1029
HaeIII	GGCC	6 cut(s)	167, 486, 665, 824, 896, 911
HapII	CCGG	5 cut(s)	522, 893, 899, 935, 963
HgaI	GACGC	1 cut(s)	800
HhaI	GCGC	1 cut(s)	1028
Hin1I	GRCGYC	1 cut(s)	792
Hin1II	CATG	2 cut(s)	277, 782
Hin6I	GCGC	1 cut(s)	1026
HinP1I	GCGC	1 cut(s)	1026
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HindIII	AAGCTT	3 cut(s)	545, 797, 817
HinfI	GANTC	1 cut(s)	998
HpaII	CCGG	5 cut(s)	522, 893, 899, 935, 963
HphI	GGTGA	3 cut(s)	80, 340, 949
Hpy166II	GTNNAC	1 cut(s)	790
Hpy188I	TCNGA	9 cut(s)	55, 65, 292, 692, 749, 834, 982, 987, 1066
Hpy188III	TCNNGA	2 cut(s)	379, 499
Hpy8I	GTNNAC	1 cut(s)	790
Hpy99I	CGWCG	6 cut(s)	254, 257, 463, 749, 794, 934
HpyAV	CCTTC	6 cut(s)	70, 138, 168, 185, 189, 198
HpyCH4III	ACNGT	3 cut(s)	26, 257, 614
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	1 cut(s)	778
HpyF10VI	GCNNNNNNNGC	8 cut(s)	124, 316, 483, 576, 653, 662, 759, 1029
HpyF3I	CTNAG	7 cut(s)	453, 473, 591, 606, 689, 784, 831
HpySE526I	ACGT	1 cut(s)	149
Hsp92I	GRCGYC	1 cut(s)	792
Hsp92II	CATG	2 cut(s)	277, 782
HspAI	GCGC	1 cut(s)	1026
KroI	GCCGGC	1 cut(s)	892
KroNI	GCCGGC	1 cut(s)	894
Kzo9I	GATC	7 cut(s)	55, 360, 369, 381, 594, 982, 1083
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	4 cut(s)	32, 266, 606, 1006
Lsp1109I	GCAGC	3 cut(s)	47, 689, 890
MaeI	CTAG	1 cut(s)	629
MaeII	ACGT	1 cut(s)	149
MalI	GATC	7 cut(s)	57, 362, 371, 383, 596, 984, 1085
MboI	GATC	7 cut(s)	55, 360, 369, 381, 594, 982, 1083
MboII	GAAGA	4 cut(s)	32, 102, 960, 1078
MfeI	CAATTG	1 cut(s)	281
MflI	RGATCY	4 cut(s)	55, 360, 369, 381
MhlI	GDGCHC	1 cut(s)	1040
MluCI	AATT	2 cut(s)	281, 712
MlyI	GAGTC	1 cut(s)	992
MmeI	TCCRAC	2 cut(s)	727, 1029
MroNI	GCCGGC	1 cut(s)	892
MseI	TTAA	1 cut(s)	1093
MslI	CAYNNNNRTG	1 cut(s)	1043
MspA1I	CMGCKG	3 cut(s)	735, 976, 1023
MspI	CCGG	5 cut(s)	522, 893, 899, 935, 963
MspR9I	CCNGG	4 cut(s)	619, 706, 899, 964
MunI	CAATTG	1 cut(s)	281
MvaI	CCWGG	2 cut(s)	619, 706
MwoI	GCNNNNNNNGC	8 cut(s)	124, 316, 483, 576, 653, 662, 759, 1029
NaeI	GCCGGC	1 cut(s)	894
NciI	CCSGG	2 cut(s)	899, 964
NdeII	GATC	7 cut(s)	55, 360, 369, 381, 594, 982, 1083
NgoMIV	GCCGGC	1 cut(s)	892
NlaIII	CATG	2 cut(s)	277, 782
NlaIV	GGNNCC	6 cut(s)	168, 487, 517, 602, 897, 1008
NmeAIII	GCCGAG	1 cut(s)	143
NspI	RCATGY	1 cut(s)	782
OliI	CACNNNNGTG	1 cut(s)	1043
PaeI	GCATGC	1 cut(s)	782
PaqCI	CACCTGC	1 cut(s)	499
PciSI	GCTCTTC	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	750
PdiI	GCCGGC	1 cut(s)	894
PflMI	CCANNNNNTGG	1 cut(s)	624
PleI	GAGTC	1 cut(s)	992
PpsI	GAGTC	1 cut(s)	992
Psp6I	CCWGG	2 cut(s)	617, 704
PspGI	CCWGG	2 cut(s)	617, 704
PspN4I	GGNNCC	6 cut(s)	168, 487, 517, 602, 897, 1008
PspPI	GGNCC	3 cut(s)	166, 485, 895
PstNI	CAGNNNCTG	2 cut(s)	322, 624
PsuI	RGATCY	4 cut(s)	55, 360, 369, 381
RsaI	GTAC	3 cut(s)	616, 767, 1058
RsaNI	GTAC	3 cut(s)	615, 766, 1057
RseI	CAYNNNNRTG	1 cut(s)	1043
SalI	GTCGAC	1 cut(s)	788
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	1093
Sau3AI	GATC	7 cut(s)	55, 360, 369, 381, 594, 982, 1083
Sau96I	GGNCC	3 cut(s)	166, 485, 895
SchI	GAGTC	1 cut(s)	992
ScrFI	CCNGG	4 cut(s)	619, 706, 899, 964
SduI	GDGCHC	1 cut(s)	1040
SfcI	CTRYAG	1 cut(s)	22
SgrAI	CRCCGGYG	1 cut(s)	934
SmiMI	CAYNNNNRTG	1 cut(s)	1043
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SphI	GCATGC	1 cut(s)	782
Sse9I	AATT	2 cut(s)	281, 712
SspMI	CTAG	1 cut(s)	629
StyD4I	CCNGG	4 cut(s)	617, 704, 897, 962
StyI	CCWWGG	1 cut(s)	481
TaaI	ACNGT	3 cut(s)	26, 257, 614
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	3 cut(s)	639, 789, 1082
TasI	AATT	2 cut(s)	281, 712
TatI	WGTACW	1 cut(s)	765
TauI	GCSGC	8 cut(s)	121, 124, 127, 532, 659, 878, 976, 1026
Tru1I	TTAA	1 cut(s)	1093
Tru9I	TTAA	1 cut(s)	1093
TscAI	CASTG	2 cut(s)	578, 1045
TseI	GCWGC	3 cut(s)	35, 677, 878
TspDTI	ATGAA	3 cut(s)	102, 113, 518
TspGWI	ACGGA	1 cut(s)	1019
TspRI	CASTG	2 cut(s)	578, 1045
Van91I	CCANNNNNTGG	1 cut(s)	624
XceI	RCATGY	1 cut(s)	782
XmiI	GTMKAC	1 cut(s)	789
XspI	CTAG	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.