Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013977

Physical Location & Seq

Genomic Coordinates Forward (+)

42272650 .. 42274716

Gene Structure 2067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G513600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCAGCTACAATGGATTTCTACAGTAGCAGAGCTTTTCAATCTTCATCAGATCCCTTTAGGGGTGAGCTGATGGAAGCACTTGAGCCTTTTATGAAGGGTGCTTCTTCATCGCCACCCAGCTCCATACCCACTACCCCTTCTCCTCCTCCTTCAACCTCAAACCCCTTTCTTCCTTCTTTCCCTTCTACCTCTTCCTCCCCCTCCTACAACAACAGCTACCTCTCTTTCTCTCCTTCAATCCCCACAACCACCACAATCCATCAGCCCGATTTGTACCAAGATGGTTGCTCCACCTCCTCCTCCATGACCCTGTTTTCAGATGGGTTCTTTGAGCAGCTGCAGCAGCAGCAACCTGGCTCAATTGGGCTGAACCACCTAACCCCTTCTCAGATCCACCAGATCCAAGTCCAGATCCAGGCTCAAAACCAGCCCAACCTGGCTTGGCAAAACTATCAGATTCAGCAACAACAAATTACTCTCCCAGAAAACCACCACCAATCTCATACCCTCAGCTTCCTTAGCCCCAAACCCATCCCGATGAAGCAGGTGGGTTCTTCTGGTTCGCCGCCAAAACCCACCAAGCTTTACAGGGGTGTAAGGCAACGCCATTGGGGCAAATGGGTCGCTGAGATCAGGCTCCCAAAGAACCGCACCAGGCTTTGGCTTGGCACCTTCGACACAGCTGAAGAAGCCGCCTTGGCCTACGACAAGGCAGCTTACAAGCTCAGAGGAGACTTCGCTAGGCTCAATTTCCCGCACCTCAGGCACAACGGCTCTTCCGTTGGAGGCGATTTCGGTGAGTACAAGCCTCTGCATTCCTCCGTCGACGCCAAGCTTCAAGCCATCTGCGAAGGCTTGGCTGAAACCCAGAAACAGGGGAAGGCAGCAGGAAAGCCCAGCAAGAGGTCCTCCGCCGCCCGAGCTCCGGCGCCGCCGCCGGAGGTGAAGGTGGAGACCTCCTCGTCGCCGGTGATGACTGATAGCGACGGGTCTGCTGGTTCTTCTCCTTTGTCCGATCTGACTTTCGCCGACAACGCAGAGTTTTTGCCATGGGAAAACGGCAGTGGTTCTGAGAGCACAGCTATGTTGGAGAAGTACCCTTCTGAGATTGATTGGGCCTCCATCCTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033554 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045595 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071369 GO:0071470 GO:0071472 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

379

Amino Acids

41.24

Weight (kDa)

6.37

Isoelectric Point (pI)

59.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78080
fragaria_vesca	FvH4_5g37820
malus_domestica	MD08G1180200.v1.1 MD15G1365500.v1.1
prunus_persica	Prupe.1G513600_v2.0.a1 Prupe.3G009400_v2.0.a1
pyrus_communis	pycom08g15420 pycom15g32790
rosa_chinensis	RchiOBHm_Chr7g0239701
rosa_laevigata	RLG00000000738
rosa_multiflora	Rmu_sc0000063.1_g000026
rosa_roxburghii	Rroxscaffold_3G00220810
rosa_samantha	Rh7AG483000 Rh7BG455900 Rh7CG500600 Rh7DG468800
rosa_wichuraiana	Rw7G040430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	538
AasI	GACNNNNNNGTC	1 cut(s)	964
Acc36I	ACCTGC	1 cut(s)	538
AccB1I	GGYRCC	2 cut(s)	671, 931
AccB7I	CCANNNNNTGG	1 cut(s)	663
AccI	GTMKAC	1 cut(s)	828
AciI	CCGC	8 cut(s)	569, 652, 696, 758, 915, 918, 935, 938
AclWI	GGATC	4 cut(s)	47, 388, 397, 409
AcuI	CTGAAG	1 cut(s)	708
AcyI	GRCGYC	2 cut(s)	831, 932
AfaI	GTAC	3 cut(s)	278, 806, 1100
AfiI	CCNNNNNNNGG	6 cut(s)	62, 418, 663, 877, 906, 928
AgsI	TTSAA	4 cut(s)	41, 156, 240, 842
AjnI	CCWGG	4 cut(s)	355, 417, 438, 656
Alw21I	GWGCWC	2 cut(s)	928, 1082
Alw26I	GTCTC	2 cut(s)	729, 950
AlwI	GGATC	4 cut(s)	47, 388, 397, 409
Ama87I	CYCGRG	1 cut(s)	921
AoxI	GGCC	2 cut(s)	702, 1119
ApeKI	GCWGC	8 cut(s)	5, 337, 340, 343, 346, 349, 716, 887
AspLEI	GCGC	1 cut(s)	934
AspS9I	GGNCC	2 cut(s)	909, 1119
AsuHPI	GGTGA	4 cut(s)	77, 812, 958, 985
AvaI	CYCGRG	1 cut(s)	921
AvaII	GGWCC	1 cut(s)	909
AxyI	CCTNAGG	1 cut(s)	764
BanI	GGYRCC	2 cut(s)	671, 931
BanII	GRGCYC	1 cut(s)	928
Bbv12I	GWGCWC	2 cut(s)	928, 1082
BbvCI	CCTCAGC	1 cut(s)	512
BbvI	GCAGC	8 cut(s)	17, 327, 349, 355, 358, 361, 728, 899
BccI	CCATC	7 cut(s)	67, 270, 278, 317, 542, 854, 1133
BceAI	ACGGC	2 cut(s)	790, 1078
BcgI	CGANNNNNNTGC	4 cut(s)	607, 641, 977, 1011
BciT130I	CCWGG	4 cut(s)	357, 419, 440, 658
BcoDI	GTCTC	2 cut(s)	729, 950
BfaI	CTAG	1 cut(s)	744
BfmI	CTRYAG	2 cut(s)	22, 341
BfoI	RGCGCY	1 cut(s)	935
BfuAI	ACCTGC	1 cut(s)	538
BglI	GCCNNNNNGGC	2 cut(s)	615, 701
Bme1390I	CCNGG	4 cut(s)	357, 419, 440, 658
Bme18I	GGWCC	1 cut(s)	909
BmeT110I	CYCGRG	1 cut(s)	921
BmgT120I	GGNCC	2 cut(s)	909, 1119
BmiI	GGNNCC	3 cut(s)	641, 673, 933
BmrFI	CCNGG	4 cut(s)	357, 419, 440, 658
BplI	GAGNNNNNCTC	2 cut(s)	947, 979
Bpu10I	CCTNAGC	2 cut(s)	512, 521
BpuEI	CTTGAG	1 cut(s)	104
BsaHI	GRCGYC	2 cut(s)	831, 932
BsaI	GGTCTC	1 cut(s)	950
BsaJI	CCNNGG	2 cut(s)	699, 1052
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	6 cut(s)	62, 418, 663, 877, 906, 928
Bse118I	RCCGGY	1 cut(s)	970
Bse21I	CCTNAGG	1 cut(s)	764
BseBI	CCWGG	4 cut(s)	357, 419, 440, 658
BseDI	CCNNGG	2 cut(s)	699, 1052
BseGI	GGATG	2 cut(s)	534, 1125
BseLI	CCNNNNNNNGG	6 cut(s)	62, 418, 663, 877, 906, 928
BseMII	CTCAG	7 cut(s)	404, 526, 621, 742, 778, 1065, 1098
BseRI	GAGGAG	6 cut(s)	135, 138, 289, 292, 747, 952
BseXI	GCAGC	8 cut(s)	17, 327, 349, 355, 358, 361, 728, 899
BseYI	CCCAGC	2 cut(s)	119, 899
BshFI	GGCC	2 cut(s)	704, 1121
BshNI	GGYRCC	2 cut(s)	671, 931
BsiHKAI	GWGCWC	2 cut(s)	928, 1082
BsiHKCI	CYCGRG	1 cut(s)	921
BsiSI	CCGG	3 cut(s)	929, 941, 971
BslI	CCNNNNNNNGG	6 cut(s)	62, 418, 663, 877, 906, 928
BsmAI	GTCTC	2 cut(s)	729, 950
BsmI	GAATGC	1 cut(s)	817
BsnI	GGCC	2 cut(s)	704, 1121
Bso31I	GGTCTC	1 cut(s)	950
BsoBI	CYCGRG	1 cut(s)	921
Bsp1286I	GDGCHC	2 cut(s)	928, 1082
Bsp143I	GATC	6 cut(s)	52, 393, 402, 414, 633, 1018
Bsp19I	CCATGG	1 cut(s)	1052
BspACI	CCGC	8 cut(s)	569, 652, 696, 758, 915, 918, 935, 938
BspANI	GGCC	2 cut(s)	704, 1121
BspCNI	CTCAG	7 cut(s)	403, 525, 622, 741, 777, 1066, 1099
BspLI	GGNNCC	3 cut(s)	641, 673, 933
BspMAI	CTGCAG	1 cut(s)	345
BspMI	ACCTGC	1 cut(s)	538
BspPI	GGATC	4 cut(s)	47, 388, 397, 409
BspQI	GCTCTTC	1 cut(s)	784
BspT107I	GGYRCC	2 cut(s)	671, 931
BspTNI	GGTCTC	1 cut(s)	950
BsrFI	RCCGGY	1 cut(s)	970
BssAI	RCCGGY	1 cut(s)	970
BssECI	CCNNGG	2 cut(s)	699, 1052
BssMI	GATC	6 cut(s)	52, 393, 402, 414, 633, 1018
BssNI	GRCGYC	2 cut(s)	831, 932
BssT1I	CCWWGG	2 cut(s)	699, 1052
Bst2UI	CCWGG	4 cut(s)	357, 419, 440, 658
Bst4CI	ACNGT	1 cut(s)	26
Bst6I	CTCTTC	2 cut(s)	199, 784
BstACI	GRCGYC	2 cut(s)	831, 932
BstDEI	CTNAG	8 cut(s)	390, 512, 521, 630, 728, 764, 1074, 1107
BstDSI	CCRYGG	1 cut(s)	1052
BstF5I	GGATG	2 cut(s)	534, 1125
BstH2I	RGCGCY	1 cut(s)	935
BstHHI	GCGC	1 cut(s)	934
BstKTI	GATC	6 cut(s)	55, 396, 405, 417, 636, 1021
BstMAI	GTCTC	2 cut(s)	729, 950
BstMBI	GATC	6 cut(s)	52, 393, 402, 414, 633, 1018
BstNI	CCWGG	4 cut(s)	357, 419, 440, 658
BstSCI	CCNGG	4 cut(s)	355, 417, 438, 656
BstSFI	CTRYAG	2 cut(s)	22, 341
BstV1I	GCAGC	8 cut(s)	17, 327, 349, 355, 358, 361, 728, 899
BstX2I	RGATCY	4 cut(s)	52, 393, 402, 414
BstYI	RGATCY	4 cut(s)	52, 393, 402, 414
Bsu36I	CCTNAGG	1 cut(s)	764
BsuRI	GGCC	2 cut(s)	704, 1121
BtgI	CCRYGG	1 cut(s)	1052
BtgZI	GCGATG	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	534, 1125
BtsI	GCAGTG	1 cut(s)	1072
BtsIMutI	CAGTG	1 cut(s)	1072
BveI	ACCTGC	1 cut(s)	538
CfoI	GCGC	1 cut(s)	934
Cfr10I	RCCGGY	1 cut(s)	970
Cfr13I	GGNCC	2 cut(s)	909, 1119
CseI	GACGC	1 cut(s)	839
Csp6I	GTAC	3 cut(s)	277, 805, 1099
CviAII	CATG	2 cut(s)	307, 1053
CviQI	GTAC	3 cut(s)	277, 805, 1099
DdeI	CTNAG	8 cut(s)	390, 512, 521, 630, 728, 764, 1074, 1107
DinI	GGCGCC	1 cut(s)	933
DpnI	GATC	6 cut(s)	54, 395, 404, 416, 635, 1020
DpnII	GATC	6 cut(s)	52, 393, 402, 414, 633, 1018
DrdI	GACNNNNNNGTC	1 cut(s)	964
DseDI	GACNNNNNNGTC	1 cut(s)	964
Eam1104I	CTCTTC	2 cut(s)	199, 784
EarI	CTCTTC	2 cut(s)	199, 784
EciI	GGCGGA	1 cut(s)	904
Ecl136II	GAGCTC	1 cut(s)	926
Eco130I	CCWWGG	2 cut(s)	699, 1052
Eco24I	GRGCYC	1 cut(s)	928
Eco31I	GGTCTC	1 cut(s)	950
Eco47I	GGWCC	1 cut(s)	909
Eco53kI	GAGCTC	1 cut(s)	926
Eco57I	CTGAAG	1 cut(s)	708
Eco81I	CCTNAGG	1 cut(s)	764
Eco88I	CYCGRG	1 cut(s)	921
EcoICRI	GAGCTC	1 cut(s)	926
EcoO109I	RGGNCCY	1 cut(s)	909
EcoRII	CCWGG	4 cut(s)	355, 417, 438, 656
EcoT14I	CCWWGG	2 cut(s)	699, 1052
EcoT38I	GRGCYC	1 cut(s)	928
EgeI	GGCGCC	1 cut(s)	933
EheI	GGCGCC	1 cut(s)	933
ErhI	CCWWGG	2 cut(s)	699, 1052
FaeI	CATG	2 cut(s)	310, 1056
FaiI	YATR	6 cut(s)	95, 128, 308, 507, 1054, 1088
FatI	CATG	2 cut(s)	306, 1052
FauI	CCCGC	1 cut(s)	765
FblI	GTMKAC	1 cut(s)	828
FokI	GGATG	2 cut(s)	521, 1112
FriOI	GRGCYC	1 cut(s)	928
FspBI	CTAG	1 cut(s)	744
GlaI	GCGC	1 cut(s)	933
GsaI	CCCAGC	2 cut(s)	123, 903
HaeII	RGCGCY	1 cut(s)	935
HaeIII	GGCC	2 cut(s)	704, 1121
HapII	CCGG	3 cut(s)	929, 941, 971
HgaI	GACGC	1 cut(s)	839
HhaI	GCGC	1 cut(s)	934
Hin1I	GRCGYC	2 cut(s)	831, 932
Hin1II	CATG	2 cut(s)	310, 1056
Hin6I	GCGC	1 cut(s)	932
HinP1I	GCGC	1 cut(s)	932
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HindIII	AAGCTT	2 cut(s)	584, 836
HinfI	GANTC	1 cut(s)	460
HpaII	CCGG	3 cut(s)	929, 941, 971
HphI	GGTGA	4 cut(s)	77, 812, 958, 985
Hpy166II	GTNNAC	1 cut(s)	829
Hpy188I	TCNGA	9 cut(s)	52, 322, 393, 459, 731, 1018, 1023, 1075, 1108
Hpy188III	TCNNGA	2 cut(s)	412, 538
Hpy8I	GTNNAC	1 cut(s)	829
Hpy99I	CGWCG	4 cut(s)	830, 833, 970, 992
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	2 cut(s)	343, 817
HpyF3I	CTNAG	8 cut(s)	390, 512, 521, 630, 728, 764, 1074, 1107
Hsp92I	GRCGYC	2 cut(s)	831, 932
Hsp92II	CATG	2 cut(s)	310, 1056
HspAI	GCGC	1 cut(s)	932
KasI	GGCGCC	1 cut(s)	931
Kzo9I	GATC	6 cut(s)	52, 393, 402, 414, 633, 1018
LguI	GCTCTTC	1 cut(s)	784
LmnI	GCTCC	4 cut(s)	128, 296, 645, 931
Lsp1109I	GCAGC	8 cut(s)	17, 327, 349, 355, 358, 361, 728, 899
MaeI	CTAG	1 cut(s)	744
MalI	GATC	6 cut(s)	54, 395, 404, 416, 635, 1020
MboI	GATC	6 cut(s)	52, 393, 402, 414, 633, 1018
MboII	GAAGA	8 cut(s)	36, 99, 164, 186, 549, 701, 771, 996
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	4 cut(s)	52, 393, 402, 414
MhlI	GDGCHC	2 cut(s)	928, 1082
MluCI	AATT	4 cut(s)	363, 474, 751, 1132
Mly113I	GGCGCC	1 cut(s)	932
MmeI	TCCRAC	2 cut(s)	766, 1071
MseI	TTAA	1 cut(s)	1135
MslI	CAYNNNNRTG	2 cut(s)	539, 1085
MspA1I	CMGCKG	2 cut(s)	340, 686
MspI	CCGG	3 cut(s)	929, 941, 971
MspR9I	CCNGG	4 cut(s)	357, 419, 440, 658
MunI	CAATTG	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	817
MvaI	CCWGG	4 cut(s)	357, 419, 440, 658
NarI	GGCGCC	1 cut(s)	932
NcoI	CCATGG	1 cut(s)	1052
NdeII	GATC	6 cut(s)	52, 393, 402, 414, 633, 1018
NlaIII	CATG	2 cut(s)	310, 1056
NlaIV	GGNNCC	3 cut(s)	641, 673, 933
PaqCI	CACCTGC	1 cut(s)	538
PciSI	GCTCTTC	1 cut(s)	784
PcsI	WCGNNNNNNNCGW	1 cut(s)	780
PctI	GAATGC	1 cut(s)	817
PfeI	GAWTC	1 cut(s)	460
PflMI	CCANNNNNTGG	1 cut(s)	663
PluTI	GGCGCC	1 cut(s)	935
PpuMI	RGGWCCY	1 cut(s)	909
Psp124BI	GAGCTC	1 cut(s)	928
Psp5II	RGGWCCY	1 cut(s)	909
Psp6I	CCWGG	4 cut(s)	355, 417, 438, 656
PspFI	CCCAGC	2 cut(s)	119, 899
PspGI	CCWGG	4 cut(s)	355, 417, 438, 656
PspN4I	GGNNCC	3 cut(s)	641, 673, 933
PspPI	GGNCC	2 cut(s)	909, 1119
PspPPI	RGGWCCY	1 cut(s)	909
PstI	CTGCAG	1 cut(s)	345
PsuI	RGATCY	4 cut(s)	52, 393, 402, 414
PvuII	CAGCTG	2 cut(s)	340, 686
RsaI	GTAC	3 cut(s)	278, 806, 1100
RsaNI	GTAC	3 cut(s)	277, 805, 1099
RseI	CAYNNNNRTG	2 cut(s)	539, 1085
SacI	GAGCTC	1 cut(s)	928
SalI	GTCGAC	1 cut(s)	827
SapI	GCTCTTC	1 cut(s)	784
SaqAI	TTAA	1 cut(s)	1135
Sau3AI	GATC	6 cut(s)	52, 393, 402, 414, 633, 1018
Sau96I	GGNCC	2 cut(s)	909, 1119
ScrFI	CCNGG	4 cut(s)	357, 419, 440, 658
SduI	GDGCHC	2 cut(s)	928, 1082
SfcI	CTRYAG	2 cut(s)	22, 341
SfoI	GGCGCC	1 cut(s)	933
SgrAI	CRCCGGYG	1 cut(s)	970
SgrDI	CGTCGACG	1 cut(s)	827
SinI	GGWCC	1 cut(s)	909
SmiMI	CAYNNNNRTG	2 cut(s)	539, 1085
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	4 cut(s)	363, 474, 751, 1132
SsiI	CCGC	8 cut(s)	569, 652, 696, 758, 915, 918, 935, 938
SspDI	GGCGCC	1 cut(s)	931
SspMI	CTAG	1 cut(s)	744
SstI	GAGCTC	1 cut(s)	928
StyD4I	CCNGG	4 cut(s)	355, 417, 438, 656
StyI	CCWWGG	2 cut(s)	699, 1052
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	678, 828
TasI	AATT	4 cut(s)	363, 474, 751, 1132
TatI	WGTACW	1 cut(s)	804
TauI	GCSGC	5 cut(s)	571, 698, 920, 937, 940
TfiI	GAWTC	1 cut(s)	460
Tru1I	TTAA	1 cut(s)	1135
Tru9I	TTAA	1 cut(s)	1135
TscAI	CASTG	1 cut(s)	1072
TseI	GCWGC	8 cut(s)	5, 337, 340, 343, 346, 349, 716, 887
TspDTI	ATGAA	4 cut(s)	36, 99, 110, 557
TspGWI	ACGGA	2 cut(s)	772, 814
TspRI	CASTG	1 cut(s)	1072
Van91I	CCANNNNNTGG	1 cut(s)	663
VpaK11BI	GGWCC	1 cut(s)	909
XmiI	GTMKAC	1 cut(s)	828
XspI	CTAG	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.