Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0013977

Physical Location & Seq

Genomic Coordinates Reverse (-)

53780342 .. 53783028

Gene Structure 2687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG455900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCAGCTATGGATATCTACAGTAGCAGACCTCTTCAGTCATCTTCGGATCCTTTTACGGGTGAGCTCATGGAAGCACTTGAACCTTTTATGAAAAGTGCGTCTCCACCGCCGCCTTGTTCTTCTTATTCTCCTTCTTCTTTCGATTTCAACCCTTCTATCCCAACCCCATCTTCTTCTTATTCTTCTTCTTCAACCCCTTTTCTTTCTTCTACTTCTTCTCCTTCTTCTTCCTACAACTACCTGTCTTTCTCCCCTTCGATTCCTACCCCGCAGCCCAATTTGTACCAAGACGGTGGCTCAACCTTTTCCTTGGGTTTCGAGCAGCATGGTTCGATTGGGCTGAACCACCTTACCCCTTCCCAGATCCACCAGATCCAGGCCGAGATCCAGCTCCAGAATCAACCCCAGATGATGGCATGGCAGCAAAACTATCAGCAACAGTCATCACCATCCCACACGCTCAGCTTTCTCAGTCCCAAACCTGTTCCCATGAAGCAATCTGGTTCGCCGCCCAAGCCCACCAAGCTTTACCGGGGAGTGAGGCAGAGGCATTGGGGGAAATGGGTCGCCGAGATCCGGCTACCCAAGAACCGAACCCGCCTCTGGCTCGGCACTTTCGACACAGCTGAAGAAGCAGCCTTGGCTTATGACAAAGCAGCTTACAAGCTCCGTGGCGACTTTGCCCGCCTCAATTTCCCTCATTTGAAGCACACCGGCTCAGTTGTTGGTGGCGAGTTCGGCGAGTACAAGCCTCTGCATTCCTCTGTTGACGCGAAGCTTCAGGCCATTTGCGAAGGGTTGGCTGAGTCGCAGAAACAGGGGAAGGCAGGGAAGCAGGCGGGTGCGGCCAAGAAATCATCGGCCGCCCGCTCGCAGCAGAAGCCGAAGTCAACACCGGTGCCGGAACCGGAACCGGAGGCTTTGACGGTGAAGATGGAGAGCTCCTCCTTGTCGCCGGTGATGACGGATAGTGATGGGTCTGCAGGGTCTTCTCCTCTATCGGATCTGACCTTTGCCGACTACTCAGAGTCCTCATCGCCCTGGGAGACCTGCGGAACGGAGAGTTACATGTTGGAGAAGTATCCTTCGGAGATTGATTGGGCTTCGATCTTCAATCAAAATTTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033554 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045595 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071369 GO:0071470 GO:0071472 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

377

Amino Acids

41.13

Weight (kDa)

6.26

Isoelectric Point (pI)

68.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	177 - 226	5.5e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78080
fragaria_vesca	FvH4_5g37820
malus_domestica	MD08G1180200.v1.1 MD15G1365500.v1.1
prunus_persica	Prupe.1G513600_v2.0.a1 Prupe.3G009400_v2.0.a1
pyrus_communis	pycom08g15420 pycom15g32790
rosa_chinensis	RchiOBHm_Chr7g0239701
rosa_laevigata	RLG00000000738
rosa_multiflora	Rmu_sc0000063.1_g000026
rosa_roxburghii	Rroxscaffold_3G00220810
rosa_samantha	Rh7AG483000 Rh7BG455900 Rh7CG500600 Rh7DG468800
rosa_wichuraiana	Rw7G040430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1061
AccB1I	GGYRCC	1 cut(s)	901
AccB7I	CCANNNNNTGG	1 cut(s)	415
AccBSI	CCGCTC	1 cut(s)	873
AccII	CGCG	1 cut(s)	776
AclWI	GGATC	7 cut(s)	44, 57, 361, 370, 382, 571, 1014
AcoI	YGGCCR	2 cut(s)	849, 864
AcsI	RAATTY	1 cut(s)	1123
AcuI	CTGAAG	3 cut(s)	20, 651, 767
AfaI	GTAC	2 cut(s)	287, 749
AfiI	CCNNNNNNNGG	5 cut(s)	59, 379, 415, 579, 606
AflIII	ACRYGT	1 cut(s)	1071
AgeI	ACCGGT	1 cut(s)	898
AgsI	TTSAA	6 cut(s)	83, 151, 195, 709, 1117, 1129
AjnI	CCWGG	2 cut(s)	378, 1043
AjuI	GAANNNNNNNTTGG	2 cut(s)	157, 189
Alw21I	GWGCWC	2 cut(s)	69, 947
Alw26I	GTCTC	2 cut(s)	108, 1043
AlwI	GGATC	7 cut(s)	44, 57, 361, 370, 382, 571, 1014
AoxI	GGCC	4 cut(s)	381, 786, 849, 864
ApeKI	GCWGC	7 cut(s)	5, 274, 325, 424, 638, 659, 877
ApoI	RAATTY	1 cut(s)	1123
AsiGI	ACCGGT	1 cut(s)	898
AsuC2I	CCSGG	1 cut(s)	536
AsuHPI	GGTGA	4 cut(s)	74, 441, 943, 973
BamHI	GGATCC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	901
BanII	GRGCYC	2 cut(s)	69, 947
BbsI	GAAGAC	1 cut(s)	984
Bbv12I	GWGCWC	2 cut(s)	69, 947
BbvI	GCAGC	7 cut(s)	17, 286, 337, 436, 650, 671, 889
BccI	CCATC	5 cut(s)	178, 409, 460, 931, 971
BciT130I	CCWGG	2 cut(s)	380, 1045
BciVI	GTATCC	1 cut(s)	1095
BcnI	CCSGG	1 cut(s)	536
BcoDI	GTCTC	2 cut(s)	108, 1043
BfmI	CTRYAG	2 cut(s)	19, 984
BfuAI	ACCTGC	1 cut(s)	1061
BfuI	GTATCC	1 cut(s)	1095
BlpI	GCTNAGC	1 cut(s)	464
Bme1390I	CCNGG	3 cut(s)	380, 536, 1045
BmiI	GGNNCC	4 cut(s)	51, 903, 909, 915
BmrFI	CCNGG	3 cut(s)	380, 536, 1045
BpiI	GAAGAC	1 cut(s)	984
BplI	GAGNNNNNCTC	2 cut(s)	932, 964
BpmI	CTGGAG	1 cut(s)	380
Bpu1102I	GCTNAGC	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	536
BsaI	GGTCTC	1 cut(s)	1043
BsaJI	CCNNGG	6 cut(s)	312, 535, 642, 673, 1043, 1044
BsaWI	WCCGGW	3 cut(s)	898, 910, 916
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	5 cut(s)	59, 379, 415, 579, 606
Bse118I	RCCGGY	3 cut(s)	716, 898, 958
BseBI	CCWGG	2 cut(s)	380, 1045
BseDI	CCNNGG	6 cut(s)	312, 535, 642, 673, 1043, 1044
BseGI	GGATG	1 cut(s)	452
BseLI	CCNNNNNNNGG	5 cut(s)	59, 379, 415, 579, 606
BseMII	CTCAG	5 cut(s)	478, 487, 735, 798, 1041
BseRI	GAGGAG	2 cut(s)	937, 987
BseX3I	CGGCCG	1 cut(s)	864
BseXI	GCAGC	7 cut(s)	17, 286, 337, 436, 650, 671, 889
Bsh1236I	CGCG	1 cut(s)	776
Bsh1285I	CGRYCG	1 cut(s)	867
BshFI	GGCC	4 cut(s)	383, 788, 851, 866
BshNI	GGYRCC	1 cut(s)	901
BshTI	ACCGGT	1 cut(s)	898
BsiEI	CGRYCG	1 cut(s)	867
BsiHKAI	GWGCWC	2 cut(s)	69, 947
BsiSI	CCGG	8 cut(s)	535, 580, 717, 899, 905, 911, 917, 959
BslFI	GGGAC	1 cut(s)	462
BslI	CCNNNNNNNGG	5 cut(s)	59, 379, 415, 579, 606
BsmAI	GTCTC	2 cut(s)	108, 1043
BsmBI	CGTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	462
BsmI	GAATGC	1 cut(s)	760
BsnI	GGCC	4 cut(s)	383, 788, 851, 866
Bso31I	GGTCTC	1 cut(s)	1043
Bsp1286I	GDGCHC	2 cut(s)	69, 947
Bsp143I	GATC	7 cut(s)	49, 366, 375, 387, 576, 1006, 1110
Bsp1720I	GCTNAGC	1 cut(s)	464
BspANI	GGCC	4 cut(s)	383, 788, 851, 866
BspCNI	CTCAG	5 cut(s)	477, 486, 734, 799, 1040
BspFNI	CGCG	1 cut(s)	776
BspLI	GGNNCC	4 cut(s)	51, 903, 909, 915
BspMAI	CTGCAG	1 cut(s)	988
BspMI	ACCTGC	1 cut(s)	1061
BspPI	GGATC	7 cut(s)	44, 57, 361, 370, 382, 571, 1014
BspT107I	GGYRCC	1 cut(s)	901
BspTNI	GGTCTC	1 cut(s)	1043
BsrBI	CCGCTC	1 cut(s)	873
BsrFI	RCCGGY	3 cut(s)	716, 898, 958
BssAI	RCCGGY	3 cut(s)	716, 898, 958
BssECI	CCNNGG	6 cut(s)	312, 535, 642, 673, 1043, 1044
BssMI	GATC	7 cut(s)	49, 366, 375, 387, 576, 1006, 1110
BssT1I	CCWWGG	2 cut(s)	312, 642
Bst2UI	CCWGG	2 cut(s)	380, 1045
Bst4CI	ACNGT	4 cut(s)	23, 296, 444, 931
Bst6I	CTCTTC	1 cut(s)	39
BstC8I	GCNNGC	4 cut(s)	688, 840, 871, 875
BstDEI	CTNAG	5 cut(s)	464, 473, 721, 807, 1027
BstDSI	CCRYGG	1 cut(s)	673
BstF5I	GGATG	1 cut(s)	452
BstFNI	CGCG	1 cut(s)	776
BstKTI	GATC	7 cut(s)	52, 369, 378, 390, 579, 1009, 1113
BstMAI	GTCTC	2 cut(s)	108, 1043
BstMBI	GATC	7 cut(s)	49, 366, 375, 387, 576, 1006, 1110
BstMCI	CGRYCG	1 cut(s)	867
BstMWI	GCNNNNNNNGC	7 cut(s)	517, 526, 635, 644, 741, 848, 883
BstNI	CCWGG	2 cut(s)	380, 1045
BstNSI	RCATGY	1 cut(s)	1075
BstSCI	CCNGG	3 cut(s)	378, 534, 1043
BstSFI	CTRYAG	2 cut(s)	19, 984
BstUI	CGCG	1 cut(s)	776
BstV1I	GCAGC	7 cut(s)	17, 286, 337, 436, 650, 671, 889
BstV2I	GAAGAC	1 cut(s)	984
BstX2I	RGATCY	6 cut(s)	49, 366, 375, 387, 576, 1006
BstXI	CCANNNNNNTGG	1 cut(s)	296
BstYI	RGATCY	6 cut(s)	49, 366, 375, 387, 576, 1006
BstZI	CGGCCG	1 cut(s)	864
BsuI	GTATCC	1 cut(s)	1095
BsuRI	GGCC	4 cut(s)	383, 788, 851, 866
BtgI	CCRYGG	1 cut(s)	673
BtgZI	GCGATG	1 cut(s)	1023
BtsCI	GGATG	1 cut(s)	452
BveI	ACCTGC	1 cut(s)	1061
Cac8I	GCNNGC	4 cut(s)	688, 840, 871, 875
Cfr10I	RCCGGY	3 cut(s)	716, 898, 958
CseI	GACGC	2 cut(s)	90, 782
Csp6I	GTAC	2 cut(s)	286, 748
CspAI	ACCGGT	1 cut(s)	898
CspCI	CAANNNNNGTGG	2 cut(s)	655, 690
CviAII	CATG	5 cut(s)	70, 329, 420, 493, 1072
CviQI	GTAC	2 cut(s)	286, 748
DdeI	CTNAG	5 cut(s)	464, 473, 721, 807, 1027
DpnI	GATC	7 cut(s)	51, 368, 377, 389, 578, 1008, 1112
DpnII	GATC	7 cut(s)	49, 366, 375, 387, 576, 1006, 1110
EaeI	YGGCCR	2 cut(s)	849, 864
EagI	CGGCCG	1 cut(s)	864
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	2 cut(s)	67, 945
EclXI	CGGCCG	1 cut(s)	864
Eco130I	CCWWGG	2 cut(s)	312, 642
Eco24I	GRGCYC	2 cut(s)	69, 947
Eco31I	GGTCTC	1 cut(s)	1043
Eco32I	GATATC	1 cut(s)	16
Eco52I	CGGCCG	1 cut(s)	864
Eco53kI	GAGCTC	2 cut(s)	67, 945
Eco57I	CTGAAG	3 cut(s)	20, 651, 767
EcoICRI	GAGCTC	2 cut(s)	67, 945
EcoRII	CCWGG	2 cut(s)	378, 1043
EcoRV	GATATC	1 cut(s)	16
EcoT14I	CCWWGG	2 cut(s)	312, 642
EcoT38I	GRGCYC	2 cut(s)	69, 947
ErhI	CCWWGG	2 cut(s)	312, 642
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	5 cut(s)	73, 332, 423, 496, 1075
FaiI	YATR	8 cut(s)	11, 71, 92, 330, 421, 494, 651, 1073
FaqI	GGGAC	1 cut(s)	462
FatI	CATG	5 cut(s)	69, 328, 419, 492, 1071
FauI	CCCGC	5 cut(s)	279, 608, 695, 835, 878
FokI	GGATG	1 cut(s)	439
FriOI	GRGCYC	2 cut(s)	69, 947
GsuI	CTGGAG	1 cut(s)	380
HaeIII	GGCC	4 cut(s)	383, 788, 851, 866
HapII	CCGG	8 cut(s)	535, 580, 717, 899, 905, 911, 917, 959
HgaI	GACGC	2 cut(s)	90, 782
Hin1II	CATG	5 cut(s)	73, 332, 423, 496, 1075
HincII	GTYRAC	2 cut(s)	772, 894
HindII	GTYRAC	2 cut(s)	772, 894
HindIII	AAGCTT	2 cut(s)	527, 779
HinfI	GANTC	4 cut(s)	262, 400, 809, 1031
HpaII	CCGG	8 cut(s)	535, 580, 717, 899, 905, 911, 917, 959
HphI	GGTGA	4 cut(s)	74, 441, 943, 973
Hpy166II	GTNNAC	2 cut(s)	772, 894
Hpy188I	TCNGA	5 cut(s)	49, 1006, 1011, 1030, 1093
Hpy188III	TCNNGA	1 cut(s)	397
Hpy8I	GTNNAC	2 cut(s)	772, 894
HpyAV	CCTTC	8 cut(s)	144, 165, 234, 267, 369, 791, 820, 1098
HpyCH4III	ACNGT	4 cut(s)	23, 296, 444, 931
HpyCH4V	TGCA	2 cut(s)	760, 986
HpyF10VI	GCNNNNNNNGC	7 cut(s)	517, 526, 635, 644, 741, 848, 883
HpyF3I	CTNAG	5 cut(s)	464, 473, 721, 807, 1027
Hsp92II	CATG	5 cut(s)	73, 332, 423, 496, 1075
Kzo9I	GATC	7 cut(s)	49, 366, 375, 387, 576, 1006, 1110
LmnI	GCTCC	3 cut(s)	399, 675, 950
Lsp1109I	GCAGC	7 cut(s)	17, 286, 337, 436, 650, 671, 889
MaeIII	GTNAC	1 cut(s)	1067
MalI	GATC	7 cut(s)	51, 368, 377, 389, 578, 1008, 1112
MbiI	CCGCTC	1 cut(s)	873
MboI	GATC	7 cut(s)	49, 366, 375, 387, 576, 1006, 1110
MflI	RGATCY	6 cut(s)	49, 366, 375, 387, 576, 1006
MhlI	GDGCHC	2 cut(s)	69, 947
MluCI	AATT	4 cut(s)	280, 694, 1123, 1129
MlyI	GAGTC	2 cut(s)	818, 1040
MmeI	TCCRAC	1 cut(s)	1056
MseI	TTAA	1 cut(s)	1132
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	8 cut(s)	535, 580, 717, 899, 905, 911, 917, 959
MspR9I	CCNGG	3 cut(s)	380, 536, 1045
Mva1269I	GAATGC	1 cut(s)	760
MvaI	CCWGG	2 cut(s)	380, 1045
MvnI	CGCG	1 cut(s)	776
MwoI	GCNNNNNNNGC	7 cut(s)	517, 526, 635, 644, 741, 848, 883
NciI	CCSGG	1 cut(s)	536
NdeII	GATC	7 cut(s)	49, 366, 375, 387, 576, 1006, 1110
NlaIII	CATG	5 cut(s)	73, 332, 423, 496, 1075
NlaIV	GGNNCC	4 cut(s)	51, 903, 909, 915
NmeAIII	GCCGAG	3 cut(s)	409, 591, 598
NspI	RCATGY	1 cut(s)	1075
PasI	CCCWGGG	1 cut(s)	1044
PciI	ACATGT	1 cut(s)	1071
PcsI	WCGNNNNNNNCGW	1 cut(s)	618
PctI	GAATGC	1 cut(s)	760
PfeI	GAWTC	2 cut(s)	262, 400
PflMI	CCANNNNNTGG	1 cut(s)	415
PinAI	ACCGGT	1 cut(s)	898
PleI	GAGTC	2 cut(s)	817, 1039
PpsI	GAGTC	2 cut(s)	817, 1039
PscI	ACATGT	1 cut(s)	1071
Psp124BI	GAGCTC	2 cut(s)	69, 947
Psp6I	CCWGG	2 cut(s)	378, 1043
PspGI	CCWGG	2 cut(s)	378, 1043
PspN4I	GGNNCC	4 cut(s)	51, 903, 909, 915
PstI	CTGCAG	1 cut(s)	988
PsuI	RGATCY	6 cut(s)	49, 366, 375, 387, 576, 1006
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	2 cut(s)	287, 749
RsaNI	GTAC	2 cut(s)	286, 748
SacI	GAGCTC	2 cut(s)	69, 947
SaqAI	TTAA	1 cut(s)	1132
Sau3AI	GATC	7 cut(s)	49, 366, 375, 387, 576, 1006, 1110
SchI	GAGTC	2 cut(s)	818, 1040
ScrFI	CCNGG	3 cut(s)	380, 536, 1045
SduI	GDGCHC	2 cut(s)	69, 947
SfcI	CTRYAG	2 cut(s)	19, 984
SgrAI	CRCCGGYG	2 cut(s)	898, 958
Sse9I	AATT	4 cut(s)	280, 694, 1123, 1129
SstI	GAGCTC	2 cut(s)	69, 947
StyD4I	CCNGG	3 cut(s)	378, 534, 1043
StyI	CCWWGG	2 cut(s)	312, 642
TaaI	ACNGT	4 cut(s)	23, 296, 444, 931
TaqI	TCGA	6 cut(s)	144, 260, 321, 335, 621, 1109
TasI	AATT	4 cut(s)	280, 694, 1123, 1129
TatI	WGTACW	1 cut(s)	747
TauI	GCSGC	4 cut(s)	115, 514, 851, 869
TfiI	GAWTC	2 cut(s)	262, 400
Tru1I	TTAA	1 cut(s)	1132
Tru9I	TTAA	1 cut(s)	1132
TseI	GCWGC	7 cut(s)	5, 274, 325, 424, 638, 659, 877
TspDTI	ATGAA	2 cut(s)	107, 509
TspGWI	ACGGA	3 cut(s)	662, 983, 1076
Van91I	CCANNNNNTGG	1 cut(s)	415
XapI	RAATTY	1 cut(s)	1123
XceI	RCATGY	1 cut(s)	1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.