Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000063.1

Orthogroup ID

OG0013977

Physical Location & Seq

Genomic Coordinates Reverse (-)

132353 .. 133486

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000063.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

atggcagctatggatatctacagtagcagtcctcttcagtcatcttcggatccttttacgggtgagctcatggaagcacttgaaccttttatgaaaagtgcgtctccaccgccgccttgttcttcttattctccttcttcttttgatttcaacccttctatcccaaccccatcttcttcttattcttcttcttcagcttcaacccctttcctttcttctacttcttctccttcttcttcctacaactacctttctttctccccttcgatccctaccccgcagcccaatttgtaccaagacggtggctcaaccttttccttgggtttcgagcagcaaggttcgattgggctgaaccaccttaccccttcccagatccaccagatccaggccgagatccagctccagaatcaaccccagatgatggcatggcagcaaaactatcagcaacagtcatcaccatcccacacgctcagctttctcagtcccaaacctgttcccatgaagcaatctggttcgccacccaagcccaccaagctttaccggggagtgaggcagaggcattgggggaaatgggtcgctgagatccggctacccaagaaccgaacccgcctctggcttggcaccttcgacacagctgaagaagcagccttggcttatgacaaagcagcttacaagctccgtggcgactttgcccgcctcaatttccctcatttgaagcacaccggctcagttgttggtggcgagttcggcgagtacaagcctctgcattcctctgttgacgcgaagcttcaggccatttgcgaagggttggctgagtcgcagaaacagggaaaggcagggaagcaggcgggtgtggccaagaaatcatcggccgcccgctcgcagcagaagccgaagtcaacaccggtgccggaaccggaggctttgacggtaaagatggagagctcctccttgtcgccggtgatgacggatagtgatgggtctgcagggtcttctcctctatcggatctgacctttgccgactactcagagtcctcatcgccctgggagaactgcggaacggagagttacatgttggagaagtatccatcggagattgattgggcttcgatcttgaatcaaaattcgaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033554 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045595 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071368 GO:0071369 GO:0071470 GO:0071472 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

377

Amino Acids

40.96

Weight (kDa)

6.19

Isoelectric Point (pI)

69.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78080
fragaria_vesca	FvH4_5g37820
malus_domestica	MD08G1180200.v1.1 MD15G1365500.v1.1
prunus_persica	Prupe.1G513600_v2.0.a1 Prupe.3G009400_v2.0.a1
pyrus_communis	pycom08g15420 pycom15g32790
rosa_chinensis	RchiOBHm_Chr7g0239701
rosa_laevigata	RLG00000000738
rosa_multiflora	Rmu_sc0000063.1_g000026
rosa_roxburghii	Rroxscaffold_3G00220810
rosa_samantha	Rh7AG483000 Rh7BG455900 Rh7CG500600 Rh7DG468800
rosa_wichuraiana	Rw7G040430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	620, 907
AccB7I	CCANNNNNTGG	1 cut(s)	421
AccBSI	CCGCTC	1 cut(s)	879
AccII	CGCG	1 cut(s)	782
AciI	CCGC	9 cut(s)	110, 113, 278, 607, 694, 848, 873, 877, 1056
AclWI	GGATC	8 cut(s)	44, 57, 262, 367, 376, 388, 577, 1014
AcoI	YGGCCR	2 cut(s)	855, 870
AcsI	RAATTY	1 cut(s)	1123
AcuI	CTGAAG	4 cut(s)	20, 177, 657, 773
AfaI	GTAC	2 cut(s)	293, 755
AfiI	CCNNNNNNNGG	4 cut(s)	59, 385, 421, 612
AflIII	ACRYGT	1 cut(s)	1071
AgeI	ACCGGT	1 cut(s)	904
AgsI	TTSAA	5 cut(s)	83, 151, 201, 715, 1117
AjnI	CCWGG	2 cut(s)	384, 1043
AjuI	GAANNNNNNNTTGG	2 cut(s)	157, 189
Alw21I	GWGCWC	2 cut(s)	69, 947
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	8 cut(s)	44, 57, 262, 367, 376, 388, 577, 1014
AoxI	GGCC	4 cut(s)	387, 792, 855, 870
ApeKI	GCWGC	7 cut(s)	5, 280, 331, 430, 644, 665, 883
ApoI	RAATTY	1 cut(s)	1123
AsiGI	ACCGGT	1 cut(s)	904
AsuC2I	CCSGG	1 cut(s)	542
AsuHPI	GGTGA	3 cut(s)	74, 447, 973
AsuII	TTCGAA	1 cut(s)	1127
BalI	TGGCCA	1 cut(s)	857
BamHI	GGATCC	1 cut(s)	49
BanI	GGYRCC	2 cut(s)	620, 907
BanII	GRGCYC	2 cut(s)	69, 947
BbsI	GAAGAC	1 cut(s)	984
Bbv12I	GWGCWC	2 cut(s)	69, 947
BbvI	GCAGC	7 cut(s)	17, 292, 343, 442, 656, 677, 895
BccI	CCATC	6 cut(s)	178, 415, 466, 931, 971, 1096
BciT130I	CCWGG	2 cut(s)	386, 1045
BciVI	GTATCC	1 cut(s)	1095
BcnI	CCSGG	1 cut(s)	542
BcoDI	GTCTC	1 cut(s)	108
BfmI	CTRYAG	2 cut(s)	19, 984
BfuI	GTATCC	1 cut(s)	1095
BisI	GCNGC	9 cut(s)	6, 113, 281, 332, 431, 645, 666, 873, 884
BlpI	GCTNAGC	1 cut(s)	470
BlsI	GCNGC	9 cut(s)	7, 114, 282, 333, 432, 646, 667, 874, 885
Bme1390I	CCNGG	3 cut(s)	386, 542, 1045
BmiI	GGNNCC	4 cut(s)	51, 622, 909, 915
BmrFI	CCNGG	3 cut(s)	386, 542, 1045
BpiI	GAAGAC	1 cut(s)	984
BplI	GAGNNNNNCTC	2 cut(s)	932, 964
BpmI	CTGGAG	1 cut(s)	386
Bpu1102I	GCTNAGC	1 cut(s)	470
Bpu14I	TTCGAA	1 cut(s)	1127
BpuMI	CCSGG	1 cut(s)	542
BsaJI	CCNNGG	6 cut(s)	318, 541, 648, 679, 1043, 1044
BsaWI	WCCGGW	2 cut(s)	904, 916
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	4 cut(s)	59, 385, 421, 612
Bse118I	RCCGGY	3 cut(s)	722, 904, 958
BseBI	CCWGG	2 cut(s)	386, 1045
BseDI	CCNNGG	6 cut(s)	318, 541, 648, 679, 1043, 1044
BseGI	GGATG	1 cut(s)	458
BseLI	CCNNNNNNNGG	4 cut(s)	59, 385, 421, 612
BseMII	CTCAG	6 cut(s)	484, 493, 570, 741, 804, 1041
BseRI	GAGGAG	2 cut(s)	937, 987
BseX3I	CGGCCG	1 cut(s)	870
BseXI	GCAGC	7 cut(s)	17, 292, 343, 442, 656, 677, 895
Bsh1236I	CGCG	1 cut(s)	782
Bsh1285I	CGRYCG	1 cut(s)	873
BshFI	GGCC	4 cut(s)	389, 794, 857, 872
BshNI	GGYRCC	2 cut(s)	620, 907
BshTI	ACCGGT	1 cut(s)	904
BsiEI	CGRYCG	1 cut(s)	873
BsiHKAI	GWGCWC	2 cut(s)	69, 947
BsiSI	CCGG	7 cut(s)	541, 586, 723, 905, 911, 917, 959
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	4 cut(s)	59, 385, 421, 612
BsmAI	GTCTC	1 cut(s)	108
BsmBI	CGTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	468
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	4 cut(s)	389, 794, 857, 872
Bsp119I	TTCGAA	1 cut(s)	1127
Bsp1286I	GDGCHC	2 cut(s)	69, 947
Bsp143I	GATC	8 cut(s)	49, 267, 372, 381, 393, 582, 1006, 1110
Bsp1720I	GCTNAGC	1 cut(s)	470
BspACI	CCGC	9 cut(s)	110, 113, 278, 607, 694, 848, 873, 877, 1056
BspANI	GGCC	4 cut(s)	389, 794, 857, 872
BspCNI	CTCAG	6 cut(s)	483, 492, 571, 740, 805, 1040
BspFNI	CGCG	1 cut(s)	782
BspLI	GGNNCC	4 cut(s)	51, 622, 909, 915
BspMAI	CTGCAG	1 cut(s)	988
BspPI	GGATC	8 cut(s)	44, 57, 262, 367, 376, 388, 577, 1014
BspT104I	TTCGAA	1 cut(s)	1127
BspT107I	GGYRCC	2 cut(s)	620, 907
BsrBI	CCGCTC	1 cut(s)	879
BsrFI	RCCGGY	3 cut(s)	722, 904, 958
BssAI	RCCGGY	3 cut(s)	722, 904, 958
BssECI	CCNNGG	6 cut(s)	318, 541, 648, 679, 1043, 1044
BssMI	GATC	8 cut(s)	49, 267, 372, 381, 393, 582, 1006, 1110
BssT1I	CCWWGG	2 cut(s)	318, 648
Bst2UI	CCWGG	2 cut(s)	386, 1045
Bst4CI	ACNGT	4 cut(s)	23, 302, 450, 931
Bst6I	CTCTTC	1 cut(s)	39
BstBI	TTCGAA	1 cut(s)	1127
BstC8I	GCNNGC	4 cut(s)	694, 846, 877, 881
BstDEI	CTNAG	6 cut(s)	470, 479, 579, 727, 813, 1027
BstDSI	CCRYGG	1 cut(s)	679
BstF5I	GGATG	1 cut(s)	458
BstFNI	CGCG	1 cut(s)	782
BstKTI	GATC	8 cut(s)	52, 270, 375, 384, 396, 585, 1009, 1113
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	8 cut(s)	49, 267, 372, 381, 393, 582, 1006, 1110
BstMCI	CGRYCG	1 cut(s)	873
BstMWI	GCNNNNNNNGC	7 cut(s)	523, 532, 641, 650, 747, 854, 889
BstNI	CCWGG	2 cut(s)	386, 1045
BstNSI	RCATGY	1 cut(s)	1075
BstSCI	CCNGG	3 cut(s)	384, 540, 1043
BstSFI	CTRYAG	2 cut(s)	19, 984
BstUI	CGCG	1 cut(s)	782
BstV1I	GCAGC	7 cut(s)	17, 292, 343, 442, 656, 677, 895
BstV2I	GAAGAC	1 cut(s)	984
BstX2I	RGATCY	6 cut(s)	49, 372, 381, 393, 582, 1006
BstXI	CCANNNNNNTGG	1 cut(s)	302
BstYI	RGATCY	6 cut(s)	49, 372, 381, 393, 582, 1006
BstZI	CGGCCG	1 cut(s)	870
BsuI	GTATCC	1 cut(s)	1095
BsuRI	GGCC	4 cut(s)	389, 794, 857, 872
BtgI	CCRYGG	1 cut(s)	679
BtgZI	GCGATG	1 cut(s)	1023
BtsCI	GGATG	1 cut(s)	458
Cac8I	GCNNGC	4 cut(s)	694, 846, 877, 881
Cfr10I	RCCGGY	3 cut(s)	722, 904, 958
CseI	GACGC	2 cut(s)	90, 788
Csp6I	GTAC	2 cut(s)	292, 754
CspAI	ACCGGT	1 cut(s)	904
CspCI	CAANNNNNGTGG	2 cut(s)	661, 696
CviAII	CATG	4 cut(s)	70, 426, 499, 1072
CviQI	GTAC	2 cut(s)	292, 754
DdeI	CTNAG	6 cut(s)	470, 479, 579, 727, 813, 1027
DpnI	GATC	8 cut(s)	51, 269, 374, 383, 395, 584, 1008, 1112
DpnII	GATC	8 cut(s)	49, 267, 372, 381, 393, 582, 1006, 1110
EaeI	YGGCCR	2 cut(s)	855, 870
EagI	CGGCCG	1 cut(s)	870
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	2 cut(s)	67, 945
EclXI	CGGCCG	1 cut(s)	870
Eco130I	CCWWGG	2 cut(s)	318, 648
Eco24I	GRGCYC	2 cut(s)	69, 947
Eco32I	GATATC	1 cut(s)	16
Eco52I	CGGCCG	1 cut(s)	870
Eco53kI	GAGCTC	2 cut(s)	67, 945
Eco57I	CTGAAG	4 cut(s)	20, 177, 657, 773
EcoICRI	GAGCTC	2 cut(s)	67, 945
EcoRII	CCWGG	2 cut(s)	384, 1043
EcoRV	GATATC	1 cut(s)	16
EcoT14I	CCWWGG	2 cut(s)	318, 648
EcoT38I	GRGCYC	2 cut(s)	69, 947
ErhI	CCWWGG	2 cut(s)	318, 648
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	4 cut(s)	73, 429, 502, 1075
FaiI	YATR	7 cut(s)	11, 71, 92, 427, 500, 657, 1073
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	4 cut(s)	69, 425, 498, 1071
FauI	CCCGC	5 cut(s)	285, 614, 701, 841, 884
Fnu4HI	GCNGC	9 cut(s)	6, 113, 281, 332, 431, 645, 666, 873, 884
FokI	GGATG	1 cut(s)	445
FriOI	GRGCYC	2 cut(s)	69, 947
Fsp4HI	GCNGC	9 cut(s)	6, 113, 281, 332, 431, 645, 666, 873, 884
GluI	GCNGC	9 cut(s)	6, 113, 281, 332, 431, 645, 666, 873, 884
GsuI	CTGGAG	1 cut(s)	386
HaeIII	GGCC	4 cut(s)	389, 794, 857, 872
HapII	CCGG	7 cut(s)	541, 586, 723, 905, 911, 917, 959
HgaI	GACGC	2 cut(s)	90, 788
Hin1II	CATG	4 cut(s)	73, 429, 502, 1075
HincII	GTYRAC	2 cut(s)	778, 900
HindII	GTYRAC	2 cut(s)	778, 900
HindIII	AAGCTT	2 cut(s)	533, 785
HinfI	GANTC	4 cut(s)	406, 815, 1031, 1117
HpaII	CCGG	7 cut(s)	541, 586, 723, 905, 911, 917, 959
HphI	GGTGA	3 cut(s)	74, 447, 973
Hpy166II	GTNNAC	2 cut(s)	778, 900
Hpy188I	TCNGA	5 cut(s)	49, 1006, 1011, 1030, 1093
Hpy188III	TCNNGA	2 cut(s)	403, 1114
Hpy8I	GTNNAC	2 cut(s)	778, 900
HpyAV	CCTTC	7 cut(s)	144, 165, 240, 273, 375, 634, 797
HpyCH4III	ACNGT	4 cut(s)	23, 302, 450, 931
HpyCH4V	TGCA	2 cut(s)	766, 986
HpyF10VI	GCNNNNNNNGC	7 cut(s)	523, 532, 641, 650, 747, 854, 889
HpyF3I	CTNAG	6 cut(s)	470, 479, 579, 727, 813, 1027
Hsp92II	CATG	4 cut(s)	73, 429, 502, 1075
Kzo9I	GATC	8 cut(s)	49, 267, 372, 381, 393, 582, 1006, 1110
LmnI	GCTCC	3 cut(s)	405, 681, 950
Lsp1109I	GCAGC	7 cut(s)	17, 292, 343, 442, 656, 677, 895
MaeIII	GTNAC	1 cut(s)	1067
MalI	GATC	8 cut(s)	51, 269, 374, 383, 395, 584, 1008, 1112
MbiI	CCGCTC	1 cut(s)	879
MboI	GATC	8 cut(s)	49, 267, 372, 381, 393, 582, 1006, 1110
MflI	RGATCY	6 cut(s)	49, 372, 381, 393, 582, 1006
MhlI	GDGCHC	2 cut(s)	69, 947
MlsI	TGGCCA	1 cut(s)	857
MluCI	AATT	4 cut(s)	286, 700, 1123, 1129
MluNI	TGGCCA	1 cut(s)	857
MlyI	GAGTC	2 cut(s)	824, 1040
MmeI	TCCRAC	1 cut(s)	1056
Mox20I	TGGCCA	1 cut(s)	857
MscI	TGGCCA	1 cut(s)	857
MseI	TTAA	1 cut(s)	1132
Msp20I	TGGCCA	1 cut(s)	857
MspA1I	CMGCKG	1 cut(s)	635
MspI	CCGG	7 cut(s)	541, 586, 723, 905, 911, 917, 959
MspR9I	CCNGG	3 cut(s)	386, 542, 1045
Mva1269I	GAATGC	1 cut(s)	766
MvaI	CCWGG	2 cut(s)	386, 1045
MvnI	CGCG	1 cut(s)	782
MwoI	GCNNNNNNNGC	7 cut(s)	523, 532, 641, 650, 747, 854, 889
NciI	CCSGG	1 cut(s)	542
NdeII	GATC	8 cut(s)	49, 267, 372, 381, 393, 582, 1006, 1110
NlaIII	CATG	4 cut(s)	73, 429, 502, 1075
NlaIV	GGNNCC	4 cut(s)	51, 622, 909, 915
NmeAIII	GCCGAG	1 cut(s)	415
NspI	RCATGY	1 cut(s)	1075
NspV	TTCGAA	1 cut(s)	1127
PasI	CCCWGGG	1 cut(s)	1044
PciI	ACATGT	1 cut(s)	1071
PctI	GAATGC	1 cut(s)	766
PfeI	GAWTC	2 cut(s)	406, 1117
PflMI	CCANNNNNTGG	1 cut(s)	421
PinAI	ACCGGT	1 cut(s)	904
PkrI	GCNGC	9 cut(s)	7, 114, 282, 333, 432, 646, 667, 874, 885
PleI	GAGTC	2 cut(s)	823, 1039
PpsI	GAGTC	2 cut(s)	823, 1039
PscI	ACATGT	1 cut(s)	1071
Psp124BI	GAGCTC	2 cut(s)	69, 947
Psp6I	CCWGG	2 cut(s)	384, 1043
PspGI	CCWGG	2 cut(s)	384, 1043
PspN4I	GGNNCC	4 cut(s)	51, 622, 909, 915
PstI	CTGCAG	1 cut(s)	988
PsuI	RGATCY	6 cut(s)	49, 372, 381, 393, 582, 1006
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	2 cut(s)	293, 755
RsaNI	GTAC	2 cut(s)	292, 754
SacI	GAGCTC	2 cut(s)	69, 947
SaqAI	TTAA	1 cut(s)	1132
SatI	GCNGC	9 cut(s)	6, 113, 281, 332, 431, 645, 666, 873, 884
Sau3AI	GATC	8 cut(s)	49, 267, 372, 381, 393, 582, 1006, 1110
SchI	GAGTC	2 cut(s)	824, 1040
ScrFI	CCNGG	3 cut(s)	386, 542, 1045
SduI	GDGCHC	2 cut(s)	69, 947
SfcI	CTRYAG	2 cut(s)	19, 984
SfuI	TTCGAA	1 cut(s)	1127
SgrAI	CRCCGGYG	2 cut(s)	904, 958
Sse9I	AATT	4 cut(s)	286, 700, 1123, 1129
SsiI	CCGC	9 cut(s)	110, 113, 278, 607, 694, 848, 873, 877, 1056
SstI	GAGCTC	2 cut(s)	69, 947
StyD4I	CCNGG	3 cut(s)	384, 540, 1043
StyI	CCWWGG	2 cut(s)	318, 648
TaaI	ACNGT	4 cut(s)	23, 302, 450, 931
TaqI	TCGA	6 cut(s)	266, 327, 341, 627, 1109, 1127
TasI	AATT	4 cut(s)	286, 700, 1123, 1129
TatI	WGTACW	1 cut(s)	753
TauI	GCSGC	2 cut(s)	115, 875
TfiI	GAWTC	2 cut(s)	406, 1117
Tru1I	TTAA	1 cut(s)	1132
Tru9I	TTAA	1 cut(s)	1132
TseI	GCWGC	7 cut(s)	5, 280, 331, 430, 644, 665, 883
TspDTI	ATGAA	2 cut(s)	107, 515
TspGWI	ACGGA	3 cut(s)	668, 983, 1076
Van91I	CCANNNNNTGG	1 cut(s)	421
XapI	RAATTY	1 cut(s)	1123
XceI	RCATGY	1 cut(s)	1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.