AT1G78140

ubiE/COQ5 methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007867
Physical Location & Seq
Reverse (-)
29401759 .. 29404025
2267 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78140.1

Sequence Viewer

Length: 1068 bp
ATGCCGATGACGGTTGTTTCCGGTCGATTCTCAACGGCGTTGCTCCCTACTTGCTTTTCCTTGTCGCGGTTGCATTCCGTCAAGTACGCCGCTCAAAGACGGGTTGTTTTCGTTTCCAGATCAGCTCACGCCTCTTCAGCCTCCGTCTCCGTTGAGACAAATTCGAATTCGAATGTGGATTTTGTTATCGAGAAGAAGGATAAGAACAGAGGAGAGAAGAAGATTCTAGCTTGTCCCATCTGTTATAACTCCTTAGCATGGATTAGTCAACCTAATGGATTAATAGAATCTGCTGCCTCTGGTATTCAAGTACAATGCAATACATGTAAAAGGAGTTACTCGGGTAATGAGACGCATCTTGATTTGGCTGTTGCTAGTGGAAGCAAGAGATACAGTGAACCGATGCCTCTTTCCACTGAGTTATTTAGGACTCCACTGGTCTCGTTTCTCTATGAGAGGGGTTGGCGTCAGAATTTCATATGGGGAGGTTTTCCAGGACCAGAGAAAGAGTTTGAAATGGCTAAGGCCTATCTGAAGCCTGTTTTGGGAGGCAATATCATTGATGCTAGTTGTGGAAGTGGGATGTTCTCGAGGTTATTCACTAGAAGTGATCTATTTTCTCTGGTTATTGCTCTAGATTACTCAGAGAATATGCTGCGACAATGCTATGAACTCTTAAATAAAGAAGAAAACTTTCCCAACAAAGAGAAACTTGTTCTAGTCCGAGCTGACATTGCTAGACTCCCTTTCCTTTCGGGTTCAGTTGACGCTGTCCATGCTGGTGCTGCTCTGCATTGCTGGCCTTCACCATCCTCAGCCGTTGCTGAGATAAGCCGTGTTCTTAGACCTGGAGGAGTATTTGTGGCCACCACATTTATCTATGACGGTCCATTCAGTTTTATCCCCTTCTTGAAGAATCTTCGTCAGGAAATAATGAGATATTCAGGTTCTCACATTTTCCTAAATGAACGTGAGCTTGAAGATATCTGCAAAGCCTGTGGTCTCGTTAACTTCACTCGTGTTAGAAACGGGCCATTTATAATGCTATCTGCAACAAAACCCAGCTAA

Protein Analysis

355

Amino Acids

39.39

Weight (kDa)

9.05

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_23 PF13489 181 - 337 4.6e-09 Methyltransferase domain
Ubie_methyltran PF01209 182 - 290 4.1e-08 ubiE/COQ5 methyltransferase family
Methyltransf_31 PF13847 184 - 293 4.7e-12 Methyltransferase domain
Methyltransf_25 PF13649 186 - 285 2.9e-15 Methyltransferase domain
Methyltransf_11 PF08241 188 - 288 1.7e-20 Methyltransferase domain
Methyltransf_12 PF08242 188 - 287 4.4e-10 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 246, 1040
AccBSI CCGCTC 1 cut(s) 92
AccII CGCG 1 cut(s) 67
AciI CCGC 2 cut(s) 67, 90
AcoI YGGCCR 1 cut(s) 864
AcsI RAATTY 3 cut(s) 160, 166, 472
AcuI CTGAAG 2 cut(s) 120, 554
AcyI GRCGYC 1 cut(s) 466
AfaI GTAC 2 cut(s) 86, 312
AfiI CCNNNNNNNGG 3 cut(s) 66, 258, 545
AflIII ACRYGT 1 cut(s) 323
AgsI TTSAA 4 cut(s) 308, 515, 913, 980
AjnI CCWGG 2 cut(s) 493, 847
AjuI GAANNNNNNNTTGG 2 cut(s) 527, 559
AluBI AGCT 5 cut(s) 125, 230, 728, 976, 1065
AluI AGCT 5 cut(s) 125, 230, 728, 976, 1065
Alw26I GTCTC 5 cut(s) 149, 151, 344, 445, 1007
Ama87I CYCGRG 2 cut(s) 340, 589
AoxI GGCC 4 cut(s) 525, 800, 864, 1031
ApeKI GCWGC 3 cut(s) 293, 655, 785
ApoI RAATTY 3 cut(s) 160, 166, 472
AseI ATTAAT 1 cut(s) 281
Asp700I GAANNNNTTC 1 cut(s) 693
AspS9I GGNCC 3 cut(s) 497, 887, 1031
AsuHPI GGTGA 1 cut(s) 798
AsuII TTCGAA 2 cut(s) 164, 170
AvaI CYCGRG 2 cut(s) 340, 589
AvaII GGWCC 2 cut(s) 497, 887
BalI TGGCCA 1 cut(s) 866
BauI CACGAG 1 cut(s) 1017
BbvCI CCTCAGC 1 cut(s) 814
BbvI GCAGC 3 cut(s) 280, 642, 772
BccI CCATC 2 cut(s) 245, 817
BceAI ACGGC 3 cut(s) 51, 803, 819
BciT130I CCWGG 2 cut(s) 495, 849
BcoDI GTCTC 5 cut(s) 149, 151, 344, 445, 1007
BfaI CTAG 7 cut(s) 227, 375, 567, 603, 635, 719, 738
BisI GCNGC 4 cut(s) 90, 294, 656, 786
BlsI GCNGC 4 cut(s) 91, 295, 657, 787
Bme1390I CCNGG 2 cut(s) 495, 849
Bme18I GGWCC 2 cut(s) 497, 887
BmeT110I CYCGRG 2 cut(s) 340, 589
BmgT120I GGNCC 3 cut(s) 497, 887, 1031
BmrFI CCNGG 2 cut(s) 495, 849
BmsI GCATC 3 cut(s) 364, 393, 553
BpmI CTGGAG 1 cut(s) 870
Bpu10I CCTNAGC 3 cut(s) 253, 522, 814
Bpu14I TTCGAA 2 cut(s) 164, 170
BsaHI GRCGYC 1 cut(s) 466
BsaI GGTCTC 2 cut(s) 445, 1007
BsaWI WCCGGW 1 cut(s) 20
BsaXI ACNNNNNCTCC 2 cut(s) 846, 876
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 258, 545
Bse1I ACTGG 1 cut(s) 441
Bse3DI GCAATG 2 cut(s) 732, 793
BseBI CCWGG 2 cut(s) 495, 849
BseGI GGATG 2 cut(s) 588, 809
BseLI CCNNNNNNNGG 3 cut(s) 66, 258, 545
BseMI GCAATG 2 cut(s) 732, 793
BseMII CTCAG 4 cut(s) 408, 657, 816, 828
BseNI ACTGG 1 cut(s) 441
BseRI GAGGAG 2 cut(s) 225, 867
BseXI GCAGC 3 cut(s) 280, 642, 772
BseYI CCCAGC 1 cut(s) 1061
Bsh1236I CGCG 1 cut(s) 67
Bsh1285I CGRYCG 1 cut(s) 25
BshFI GGCC 4 cut(s) 527, 802, 866, 1033
BsiEI CGRYCG 1 cut(s) 25
BsiHKCI CYCGRG 2 cut(s) 340, 589
BsiSI CCGG 1 cut(s) 21
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 3 cut(s) 66, 258, 545
BsmAI GTCTC 5 cut(s) 149, 151, 344, 445, 1007
BsmBI CGTCTC 2 cut(s) 151, 344
BsmFI GGGAC 1 cut(s) 219
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 4 cut(s) 527, 802, 866, 1033
Bso31I GGTCTC 2 cut(s) 445, 1007
BsoBI CYCGRG 2 cut(s) 340, 589
Bsp119I TTCGAA 2 cut(s) 164, 170
Bsp143I GATC 2 cut(s) 119, 610
BspACI CCGC 2 cut(s) 67, 90
BspANI GGCC 4 cut(s) 527, 802, 866, 1033
BspCNI CTCAG 4 cut(s) 409, 656, 817, 827
BspFNI CGCG 1 cut(s) 67
BspT104I TTCGAA 2 cut(s) 164, 170
BspTNI GGTCTC 2 cut(s) 445, 1007
BsrBI CCGCTC 1 cut(s) 92
BsrDI GCAATG 2 cut(s) 732, 793
BsrI ACTGG 1 cut(s) 441
BssMI GATC 2 cut(s) 119, 610
BssNI GRCGYC 1 cut(s) 466
BssSI CACGAG 1 cut(s) 1017
Bst2BI CACGAG 1 cut(s) 1017
Bst2UI CCWGG 2 cut(s) 495, 849
Bst4CI ACNGT 3 cut(s) 13, 395, 887
Bst6I CTCTTC 1 cut(s) 139
BstACI GRCGYC 1 cut(s) 466
BstBI TTCGAA 2 cut(s) 164, 170
BstC8I GCNNGC 1 cut(s) 800
BstDEI CTNAG 7 cut(s) 253, 417, 522, 643, 814, 825, 842
BstF5I GGATG 2 cut(s) 588, 809
BstFNI CGCG 1 cut(s) 67
BstKTI GATC 2 cut(s) 122, 613
BstMAI GTCTC 5 cut(s) 149, 151, 344, 445, 1007
BstMBI GATC 2 cut(s) 119, 610
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 5 cut(s) 137, 734, 776, 785, 799
BstNI CCWGG 2 cut(s) 495, 849
BstNSI RCATGY 1 cut(s) 327
BstSCI CCNGG 2 cut(s) 493, 847
BstUI CGCG 1 cut(s) 67
BstV1I GCAGC 3 cut(s) 280, 642, 772
BsuRI GGCC 4 cut(s) 527, 802, 866, 1033
BtsCI GGATG 2 cut(s) 588, 809
BtsIMutI CAGTG 3 cut(s) 400, 414, 434
Cac8I GCNNGC 1 cut(s) 800
Cfr13I GGNCC 3 cut(s) 497, 887, 1031
CseI GACGC 3 cut(s) 361, 455, 776
Csp6I GTAC 2 cut(s) 85, 311
CspCI CAANNNNNGTGG 2 cut(s) 979, 1014
CviAII CATG 3 cut(s) 258, 324, 776
CviQI GTAC 2 cut(s) 85, 311
DdeI CTNAG 7 cut(s) 253, 417, 522, 643, 814, 825, 842
DpnI GATC 2 cut(s) 121, 612
DpnII GATC 2 cut(s) 119, 610
EaeI YGGCCR 1 cut(s) 864
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
Eco147I AGGCCT 1 cut(s) 527
Eco31I GGTCTC 2 cut(s) 445, 1007
Eco32I GATATC 1 cut(s) 985
Eco47I GGWCC 2 cut(s) 497, 887
Eco57I CTGAAG 2 cut(s) 120, 554
Eco88I CYCGRG 2 cut(s) 340, 589
EcoRI GAATTC 1 cut(s) 166
EcoRII CCWGG 2 cut(s) 493, 847
EcoRV GATATC 1 cut(s) 985
Esp3I CGTCTC 2 cut(s) 151, 344
FaeI CATG 3 cut(s) 261, 327, 779
FalI AAGNNNNNCTT 2 cut(s) 696, 728
FaqI GGGAC 1 cut(s) 219
FatI CATG 3 cut(s) 257, 323, 775
FauNDI CATATG 1 cut(s) 479
Fnu4HI GCNGC 4 cut(s) 90, 294, 656, 786
FokI GGATG 2 cut(s) 595, 796
Fsp4HI GCNGC 4 cut(s) 90, 294, 656, 786
FspBI CTAG 7 cut(s) 227, 375, 567, 603, 635, 719, 738
GluI GCNGC 4 cut(s) 90, 294, 656, 786
GsaI CCCAGC 1 cut(s) 1065
GsuI CTGGAG 1 cut(s) 870
HaeIII GGCC 4 cut(s) 527, 802, 866, 1033
HapII CCGG 1 cut(s) 21
HgaI GACGC 3 cut(s) 361, 455, 776
Hin1I GRCGYC 1 cut(s) 466
Hin1II CATG 3 cut(s) 261, 327, 779
HincII GTYRAC 3 cut(s) 269, 766, 1009
HindII GTYRAC 3 cut(s) 269, 766, 1009
HinfI GANTC 6 cut(s) 27, 223, 287, 430, 741, 916
HpaI GTTAAC 1 cut(s) 1009
HpaII CCGG 1 cut(s) 21
HphI GGTGA 1 cut(s) 798
Hpy166II GTNNAC 4 cut(s) 269, 398, 766, 1009
Hpy188I TCNGA 4 cut(s) 471, 534, 646, 725
Hpy188III TCNNGA 7 cut(s) 117, 190, 359, 589, 635, 910, 926
Hpy8I GTNNAC 4 cut(s) 269, 398, 766, 1009
HpyAV CCTTC 3 cut(s) 190, 813, 916
HpyCH4III ACNGT 3 cut(s) 13, 395, 887
HpyCH4IV ACGT 1 cut(s) 970
HpyCH4V TGCA 5 cut(s) 73, 318, 793, 990, 1052
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 734, 776, 785, 799
HpyF3I CTNAG 7 cut(s) 253, 417, 522, 643, 814, 825, 842
HpySE526I ACGT 1 cut(s) 970
Hsp92I GRCGYC 1 cut(s) 466
Hsp92II CATG 3 cut(s) 261, 327, 779
KspAI GTTAAC 1 cut(s) 1009
Kzo9I GATC 2 cut(s) 119, 610
LmnI GCTCC 1 cut(s) 48
Lsp1109I GCAGC 3 cut(s) 280, 642, 772
LweI GCATC 3 cut(s) 364, 393, 553
MaeI CTAG 7 cut(s) 227, 375, 567, 603, 635, 719, 738
MaeII ACGT 1 cut(s) 970
MaeIII GTNAC 1 cut(s) 335
MalI GATC 2 cut(s) 121, 612
MbiI CCGCTC 1 cut(s) 92
MboI GATC 2 cut(s) 119, 610
MboII GAAGA 8 cut(s) 126, 205, 229, 232, 698, 911, 925, 992
MlsI TGGCCA 1 cut(s) 866
MluCI AATT 3 cut(s) 160, 166, 472
MluNI TGGCCA 1 cut(s) 866
MlyI GAGTC 2 cut(s) 424, 735
Mox20I TGGCCA 1 cut(s) 866
MroXI GAANNNNTTC 1 cut(s) 693
MscI TGGCCA 1 cut(s) 866
MseI TTAA 3 cut(s) 281, 677, 1008
MslI CAYNNNNRTG 1 cut(s) 780
Msp20I TGGCCA 1 cut(s) 866
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 2 cut(s) 495, 849
Mva1269I GAATGC 1 cut(s) 73
MvaI CCWGG 2 cut(s) 495, 849
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 5 cut(s) 137, 734, 776, 785, 799
NdeI CATATG 1 cut(s) 479
NdeII GATC 2 cut(s) 119, 610
NlaIII CATG 3 cut(s) 261, 327, 779
NspI RCATGY 1 cut(s) 327
NspV TTCGAA 2 cut(s) 164, 170
PaeR7I CTCGAG 1 cut(s) 589
PceI AGGCCT 1 cut(s) 527
PciI ACATGT 1 cut(s) 323
PctI GAATGC 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 693
PfeI GAWTC 4 cut(s) 27, 223, 287, 916
PflFI GACNNNGTC 1 cut(s) 770
PfoI TCCNGGA 1 cut(s) 493
PkrI GCNGC 4 cut(s) 91, 295, 657, 787
PleI GAGTC 2 cut(s) 424, 735
PpsI GAGTC 2 cut(s) 424, 735
PscI ACATGT 1 cut(s) 323
PshBI ATTAAT 1 cut(s) 281
PsiI TTATAA 2 cut(s) 246, 1040
Psp6I CCWGG 2 cut(s) 493, 847
PspFI CCCAGC 1 cut(s) 1061
PspGI CCWGG 2 cut(s) 493, 847
PspPI GGNCC 3 cut(s) 497, 887, 1031
PsyI GACNNNGTC 1 cut(s) 770
RsaI GTAC 2 cut(s) 86, 312
RsaNI GTAC 2 cut(s) 85, 311
RseI CAYNNNNRTG 1 cut(s) 780
SaqAI TTAA 3 cut(s) 281, 677, 1008
SatI GCNGC 4 cut(s) 90, 294, 656, 786
Sau3AI GATC 2 cut(s) 119, 610
Sau96I GGNCC 3 cut(s) 497, 887, 1031
SchI GAGTC 2 cut(s) 424, 735
ScrFI CCNGG 2 cut(s) 495, 849
SfaNI GCATC 3 cut(s) 364, 393, 553
Sfr274I CTCGAG 1 cut(s) 589
SfuI TTCGAA 2 cut(s) 164, 170
SinI GGWCC 2 cut(s) 497, 887
SlaI CTCGAG 1 cut(s) 589
SmiMI CAYNNNNRTG 1 cut(s) 780
SmlI CTYRAG 1 cut(s) 589
SmoI CTYRAG 1 cut(s) 589
Sse9I AATT 3 cut(s) 160, 166, 472
SseBI AGGCCT 1 cut(s) 527
SsiI CCGC 2 cut(s) 67, 90
SspMI CTAG 7 cut(s) 227, 375, 567, 603, 635, 719, 738
StuI AGGCCT 1 cut(s) 527
StyD4I CCNGG 2 cut(s) 493, 847
TaaI ACNGT 3 cut(s) 13, 395, 887
TaiI ACGT 1 cut(s) 973
TaqI TCGA 5 cut(s) 25, 164, 170, 189, 590
TasI AATT 3 cut(s) 160, 166, 472
TatI WGTACW 1 cut(s) 310
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 4 cut(s) 27, 223, 287, 916
Tru1I TTAA 3 cut(s) 281, 677, 1008
Tru9I TTAA 3 cut(s) 281, 677, 1008
TscAI CASTG 3 cut(s) 400, 421, 441
TseI GCWGC 3 cut(s) 293, 655, 785
TspDTI ATGAA 3 cut(s) 466, 684, 981
TspGWI ACGGA 3 cut(s) 67, 133, 139
TspRI CASTG 3 cut(s) 400, 421, 441
Tth111I GACNNNGTC 1 cut(s) 770
VpaK11BI GGWCC 2 cut(s) 497, 887
VspI ATTAAT 1 cut(s) 281
XapI RAATTY 3 cut(s) 160, 166, 472
XbaI TCTAGA 1 cut(s) 634
XceI RCATGY 1 cut(s) 327
XhoI CTCGAG 1 cut(s) 589
XmnI GAANNNNTTC 1 cut(s) 693
XspI CTAG 7 cut(s) 227, 375, 567, 603, 635, 719, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.