Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007840.1

Orthogroup ID

OG0007867

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 6599

Gene Structure 6599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007840.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atggcgacgacgaccctcgtcagcaacctctctgtcccgagtcaactcggcaactcgaggcccgactcgctcaagcccaactctttcaccgttaatttcaaacgctctttcgcggcaatcactgttcgagcttcttccaccgccctcgtcgaggccaccccaactgacccagttgaggttcaggataatgaggccaccacctgcaacgacttgtttgcttgtcctatatgctttgatccattttcatcaaatggggagtctggttctgggtcaggttttgaatgtagcacttgtaagaagacttactttggcaatgagatacatttggacctgacagtggcgagcggtgccaagaactatggtgaatcgatgccggctgccacagagattttcaggactccgttggtatctttcctctatgagaggggctggcgacaaagcttttcggtatggggcggttttcctggcccagagaaagagtttgagttgattaaggattacttaaaaccagtcttgggtggtagcatcattgatgctagttgtgggagtgggttattttctagacttttcgccaagagtggattgttttctcatgttgttgctcttgactactcagaaaatatgttgaagcagtgctatgagttcattgaaaaggaagagaacttccccaaagagaacataactttggtcagagctgatatttctaggcttccctttgctacaagttctgttgatgctgtgcatgctggtgctgcgatacactgttggccttcaccatcaggagct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

262

Amino Acids

28.34

Weight (kDa)

5.07

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78140
fragaria_vesca	FvH4_5g37670 FvH4_5g37670 FvH4_5g37670 FvH4_5g37670 FvH4_5g37670
malus_domestica	MD05G1202100.v1.1 MD08G1181500.v1.1 MD08G1181700.v1.1 MD15G1366900.v1.1
prunus_persica	Prupe.1G514900_v2.0.a1
pyrus_communis	pycom08g15490
rosa_chinensis	RchiOBHm_Chr7g0239331
rosa_laevigata	RLG00000000762
rosa_multiflora	Rmu_sc0007840.1_g000001 Rmu_sc0008456.1_g000004
rosa_roxburghii	Rroxscaffold_3G00221000
rosa_rugosa	Rorug07G0327500 Rorug07G0327500
rosa_samantha	Rh7AG480800 Rh7BG453600 Rh7CG498700 Rh7DG466800
rosa_wichuraiana	Rw7G040290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	209
AccB1I	GGYRCC	1 cut(s)	347
AccBSI	CCGCTC	1 cut(s)	345
AccII	CGCG	1 cut(s)	113
AciI	CCGC	4 cut(s)	113, 141, 345, 456
AclWI	GGATC	1 cut(s)	230
AfiI	CCNNNNNNNGG	4 cut(s)	151, 175, 337, 515
AgsI	TTSAA	4 cut(s)	100, 281, 628, 650
AjnI	CCWGG	1 cut(s)	463
AjuI	GAANNNNNNNTTGG	2 cut(s)	668, 700
AluBI	AGCT	4 cut(s)	131, 441, 695, 785
AluI	AGCT	4 cut(s)	131, 441, 695, 785
AlwI	GGATC	1 cut(s)	230
Ama87I	CYCGRG	2 cut(s)	37, 55
AoxI	GGCC	5 cut(s)	59, 153, 192, 466, 767
ApeKI	GCWGC	2 cut(s)	377, 752
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AspS9I	GGNCC	3 cut(s)	60, 328, 467
AsuHPI	GGTGA	3 cut(s)	79, 374, 765
AvaI	CYCGRG	2 cut(s)	37, 55
AvaII	GGWCC	1 cut(s)	328
BanI	GGYRCC	1 cut(s)	347
BbsI	GAAGAC	1 cut(s)	305
BbvI	GCAGC	2 cut(s)	364, 739
BccI	CCATC	1 cut(s)	784
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BciT130I	CCWGG	1 cut(s)	465
BfaI	CTAG	3 cut(s)	537, 561, 705
BfuAI	ACCTGC	1 cut(s)	209
BisI	GCNGC	3 cut(s)	114, 378, 753
BlsI	GCNGC	3 cut(s)	115, 379, 754
Bme1390I	CCNGG	1 cut(s)	465
Bme18I	GGWCC	1 cut(s)	328
BmeT110I	CYCGRG	2 cut(s)	37, 55
BmgT120I	GGNCC	3 cut(s)	60, 328, 467
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	465
BmrI	ACTGGG	1 cut(s)	164
BmsI	GCATC	4 cut(s)	360, 523, 534, 724
BmuI	ACTGGG	1 cut(s)	164
BoxI	GACNNNNGTC	1 cut(s)	17
BpiI	GAAGAC	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	4 cut(s)	151, 175, 337, 515
Bse118I	RCCGGY	1 cut(s)	373
Bse1I	ACTGG	2 cut(s)	170, 509
Bse3DI	GCAATG	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	465
BseCI	ATCGAT	1 cut(s)	368
BseLI	CCNNNNNNNGG	4 cut(s)	151, 175, 337, 515
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	1 cut(s)	627
BseNI	ACTGG	2 cut(s)	170, 509
BseXI	GCAGC	2 cut(s)	364, 739
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	5 cut(s)	61, 155, 194, 468, 769
BshNI	GGYRCC	1 cut(s)	347
BshVI	ATCGAT	1 cut(s)	368
BsiHKCI	CYCGRG	2 cut(s)	37, 55
BsiSI	CCGG	1 cut(s)	374
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	4 cut(s)	151, 175, 337, 515
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	5 cut(s)	61, 155, 194, 468, 769
BsoBI	CYCGRG	2 cut(s)	37, 55
Bsp143I	GATC	1 cut(s)	235
BspACI	CCGC	4 cut(s)	113, 141, 345, 456
BspANI	GGCC	5 cut(s)	61, 155, 194, 468, 769
BspCNI	CTCAG	1 cut(s)	626
BspDI	ATCGAT	1 cut(s)	368
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	349
BspMI	ACCTGC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	347
BsrBI	CCGCTC	1 cut(s)	345
BsrDI	GCAATG	1 cut(s)	319
BsrFI	RCCGGY	1 cut(s)	373
BsrI	ACTGG	2 cut(s)	170, 509
BssAI	RCCGGY	1 cut(s)	373
BssMI	GATC	1 cut(s)	235
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	4 cut(s)	91, 124, 337, 764
Bst6I	CTCTTC	1 cut(s)	651
BstC8I	GCNNGC	4 cut(s)	343, 375, 431, 744
BstDEI	CTNAG	1 cut(s)	613
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstFNI	CGCG	1 cut(s)	113
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 347, 743, 752
BstNI	CCWGG	1 cut(s)	465
BstNSI	RCATGY	1 cut(s)	746
BstPAI	GACNNNNGTC	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	463
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	2 cut(s)	364, 739
BstV2I	GAAGAC	1 cut(s)	305
Bsu15I	ATCGAT	1 cut(s)	368
BsuRI	GGCC	5 cut(s)	61, 155, 194, 468, 769
BsuTUI	ATCGAT	1 cut(s)	368
BtsI	GCAGTG	1 cut(s)	638
BtsIMutI	CAGTG	4 cut(s)	120, 342, 638, 760
BveI	ACCTGC	1 cut(s)	209
Cac8I	GCNNGC	4 cut(s)	343, 375, 431, 744
Cfr10I	RCCGGY	1 cut(s)	373
Cfr13I	GGNCC	3 cut(s)	60, 328, 467
ClaI	ATCGAT	1 cut(s)	368
CviAII	CATG	2 cut(s)	593, 743
DdeI	CTNAG	1 cut(s)	613
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	651
EarI	CTCTTC	1 cut(s)	651
Eco47I	GGWCC	1 cut(s)	328
Eco88I	CYCGRG	2 cut(s)	37, 55
EcoNI	CCTNNNNNAGG	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	463
FaeI	CATG	2 cut(s)	596, 746
FalI	AAGNNNNNCTT	4 cut(s)	290, 322, 485, 517
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	2 cut(s)	592, 742
Fnu4HI	GCNGC	3 cut(s)	114, 378, 753
Fsp4HI	GCNGC	3 cut(s)	114, 378, 753
FspBI	CTAG	3 cut(s)	537, 561, 705
GluI	GCNGC	3 cut(s)	114, 378, 753
HaeIII	GGCC	5 cut(s)	61, 155, 194, 468, 769
HapII	CCGG	1 cut(s)	374
Hin1II	CATG	2 cut(s)	596, 746
HincII	GTYRAC	1 cut(s)	44
HindII	GTYRAC	1 cut(s)	44
HindIII	AAGCTT	1 cut(s)	439
HinfI	GANTC	5 cut(s)	40, 65, 257, 365, 397
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	3 cut(s)	79, 374, 765
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	2 cut(s)	616, 692
Hpy188III	TCNNGA	6 cut(s)	37, 182, 394, 561, 605, 780
Hpy8I	GTNNAC	1 cut(s)	44
Hpy99I	CGWCG	3 cut(s)	10, 13, 152
HpyAV	CCTTC	1 cut(s)	780
HpyCH4III	ACNGT	4 cut(s)	91, 124, 337, 764
HpyCH4V	TGCA	2 cut(s)	204, 742
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 347, 743, 752
HpyF3I	CTNAG	1 cut(s)	613
Hsp92II	CATG	2 cut(s)	596, 746
KroI	GCCGGC	1 cut(s)	373
KroNI	GCCGGC	1 cut(s)	375
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	782
Lsp1109I	GCAGC	2 cut(s)	364, 739
LweI	GCATC	4 cut(s)	360, 523, 534, 724
MaeI	CTAG	3 cut(s)	537, 561, 705
MalI	GATC	1 cut(s)	237
MbiI	CCGCTC	1 cut(s)	345
MboI	GATC	1 cut(s)	235
MboII	GAAGA	3 cut(s)	126, 310, 668
MluCI	AATT	1 cut(s)	94
MlyI	GAGTC	4 cut(s)	49, 59, 266, 391
MnlI	CCTC	9 cut(s)	26, 38, 51, 145, 155, 169, 184, 417, 425
MroNI	GCCGGC	1 cut(s)	373
MseI	TTAA	3 cut(s)	93, 492, 503
MslI	CAYNNNNRTG	1 cut(s)	747
MspI	CCGG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	465
MvaI	CCWGG	1 cut(s)	465
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	4 cut(s)	67, 347, 743, 752
NaeI	GCCGGC	1 cut(s)	375
NdeII	GATC	1 cut(s)	235
NgoMIV	GCCGGC	1 cut(s)	373
NlaIII	CATG	2 cut(s)	596, 746
NlaIV	GGNNCC	1 cut(s)	349
NmeAIII	GCCGAG	1 cut(s)	27
NspI	RCATGY	1 cut(s)	746
PaeI	GCATGC	1 cut(s)	746
PaeR7I	CTCGAG	1 cut(s)	55
PaqCI	CACCTGC	1 cut(s)	209
PdiI	GCCGGC	1 cut(s)	375
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	3 cut(s)	115, 379, 754
PleI	GAGTC	4 cut(s)	48, 59, 265, 391
PpsI	GAGTC	4 cut(s)	48, 59, 265, 391
PshAI	GACNNNNGTC	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	3 cut(s)	60, 328, 467
PspXI	VCTCGAGB	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	747
SaqAI	TTAA	3 cut(s)	93, 492, 503
SatI	GCNGC	3 cut(s)	114, 378, 753
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	3 cut(s)	60, 328, 467
SchI	GAGTC	4 cut(s)	49, 59, 266, 391
ScrFI	CCNGG	1 cut(s)	465
SetI	ASST	8 cut(s)	30, 133, 180, 203, 277, 333, 443, 697
SfaNI	GCATC	4 cut(s)	360, 523, 534, 724
Sfr274I	CTCGAG	1 cut(s)	55
SinI	GGWCC	1 cut(s)	328
SlaI	CTCGAG	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	747
SmlI	CTYRAG	2 cut(s)	55, 71
SmoI	CTYRAG	2 cut(s)	55, 71
SphI	GCATGC	1 cut(s)	746
Sse9I	AATT	1 cut(s)	94
SsiI	CCGC	4 cut(s)	113, 141, 345, 456
SspMI	CTAG	3 cut(s)	537, 561, 705
StyD4I	CCNGG	1 cut(s)	463
TaaI	ACNGT	4 cut(s)	91, 124, 337, 764
TaqI	TCGA	4 cut(s)	56, 127, 150, 368
TasI	AATT	1 cut(s)	94
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	3 cut(s)	93, 492, 503
Tru9I	TTAA	3 cut(s)	93, 492, 503
TscAI	CASTG	4 cut(s)	127, 342, 638, 767
TseI	GCWGC	2 cut(s)	377, 752
TspDTI	ATGAA	2 cut(s)	234, 634
TspGWI	ACGGA	1 cut(s)	390
TspRI	CASTG	4 cut(s)	127, 342, 638, 767
VpaK11BI	GGWCC	1 cut(s)	328
XagI	CCTNNNNNAGG	1 cut(s)	149
XbaI	TCTAGA	1 cut(s)	560
XceI	RCATGY	1 cut(s)	746
XhoI	CTCGAG	1 cut(s)	55
XspI	CTAG	3 cut(s)	537, 561, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.