Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007867

Physical Location & Seq

Genomic Coordinates Forward (+)

62410064 .. 62414690

Gene Structure 4627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G040290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCGACGACGACCCTCGTCAGCAACCTCTCTGTCCCGAGTCAACTCGGCAACTCGAGGCCCGACTCGCTCAAGCCCAGCCCTTTCACCGTTAATTTCAAACGCTCTTTCGCGGCAATCACTGTTCGAGCTTCTTCCACCGCCTTCGTCGAGGCCACCCCAACTGACCCAGTTGATGTTCAGGATAATGAGGCCACCACCTGCAACGACTTGTTTGCTTGTCCTATATGCTTTGATCCATTTTCATCAAATGGGTATGAGGAGTCTGGTTCTGGGTCAGGTTTTGAATGTAGCACTTGTAAGAAGACTTACTTTGGCAATGAGATACATTTGGACCTGACAGTGGCGAGCGGTGCCAAGAACTATGGTGAATCAATGCCGGCTGCCACAGAGATTTTCAGGACTCCGTTGGTATCTTTCCTCTATGAGAGGGGCTGGCGACAAAGCTTTTCGGTATGGGGCGGTTTTCCTGGCCCAGAGAAAGAGTTTGAGTTGATTAAGGATTACTTAAAACCAGTCTTGGGTGGTAGCATCATTGATGCTAGTTGTGGGAGTGGGTTATTTTCTAGACTTTTCACCAAGAGTGGATTGTTTTCTCATGTTGTTGCTCTTGACTACTCAGAAAATATGTTGAAGCAGTGCTATGAGTTCATTGAAAAGGAAGAGAACTTCCCCAAAGAGAACATAACTTTGGTCAGAGCTGATATTTCTAGGCTTCCCTTTGCTACAAGTTCTGTTGATGCTGTGCATGCTGGTGCTGCGATACACTGTTGGCCTTCACCATCAGGAGCTGTTGCTGAAATTAGCAGAGTACTGCGACCTGGTGGGGTGTTTGTTGCGACAACTTACATACTTGATGGTCCTTTTTCCTTTGTCCCATTTTTGAGGGAAGGAACCAAGAGAACAAGGCAAATATCGGGCAGCCAAATCTTCCTATCTGAAGGTGAATTAGAAGACATCTGTACAGCATGTGGACTAGTAGGTTTTACAGCCGTGAGGAATCGGTTATTTGTGATGATCTCTGCCACAAAACCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

346

Amino Acids

37.57

Weight (kDa)

5.29

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	169 - 280	2.8e-10	ubiE/COQ5 methyltransferase family
Methyltransf_23	PF13489	172 - 283	2.1e-07	Methyltransferase domain
Methyltransf_31	PF13847	176 - 283	2.1e-15	Methyltransferase domain
Methyltransf_25	PF13649	178 - 276	3.6e-18	Methyltransferase domain
Methyltransf_11	PF08241	180 - 279	1.7e-22	Methyltransferase domain
Methyltransf_12	PF08242	180 - 278	3.5e-12	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78140
fragaria_vesca	FvH4_5g37670 FvH4_5g37670 FvH4_5g37670 FvH4_5g37670 FvH4_5g37670
malus_domestica	MD05G1202100.v1.1 MD08G1181500.v1.1 MD08G1181700.v1.1 MD15G1366900.v1.1
prunus_persica	Prupe.1G514900_v2.0.a1
pyrus_communis	pycom08g15490
rosa_chinensis	RchiOBHm_Chr7g0239331
rosa_laevigata	RLG00000000762
rosa_multiflora	Rmu_sc0007840.1_g000001 Rmu_sc0008456.1_g000004
rosa_roxburghii	Rroxscaffold_3G00221000
rosa_rugosa	Rorug07G0327500 Rorug07G0327500
rosa_samantha	Rh7AG480800 Rh7BG453600 Rh7CG498700 Rh7DG466800
rosa_wichuraiana	Rw7G040290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	209
AccB1I	GGYRCC	1 cut(s)	353
AccBSI	CCGCTC	1 cut(s)	351
AccII	CGCG	1 cut(s)	113
AciI	CCGC	4 cut(s)	113, 141, 351, 462
AclWI	GGATC	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	960
AfaI	GTAC	2 cut(s)	813, 964
AfiI	CCNNNNNNNGG	2 cut(s)	343, 521
AgsI	TTSAA	4 cut(s)	100, 287, 634, 656
AhlI	ACTAGT	1 cut(s)	976
AjnI	CCWGG	2 cut(s)	469, 820
AjuI	GAANNNNNNNTTGG	2 cut(s)	674, 706
AluBI	AGCT	4 cut(s)	131, 447, 701, 791
AluI	AGCT	4 cut(s)	131, 447, 701, 791
AlwI	GGATC	1 cut(s)	230
AlwNI	CAGNNNCTG	1 cut(s)	791
Ama87I	CYCGRG	2 cut(s)	37, 55
AoxI	GGCC	5 cut(s)	59, 153, 192, 472, 773
ApeKI	GCWGC	3 cut(s)	383, 758, 921
AspS9I	GGNCC	4 cut(s)	60, 334, 473, 860
AsuHPI	GGTGA	5 cut(s)	79, 380, 568, 771, 956
AvaI	CYCGRG	2 cut(s)	37, 55
AvaII	GGWCC	2 cut(s)	334, 860
BanI	GGYRCC	1 cut(s)	353
BbsI	GAAGAC	2 cut(s)	311, 960
BbvI	GCAGC	3 cut(s)	370, 745, 933
BccI	CCATC	2 cut(s)	790, 851
BceAI	ACGGC	1 cut(s)	977
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BciT130I	CCWGG	2 cut(s)	471, 822
BcuI	ACTAGT	1 cut(s)	976
BfaI	CTAG	4 cut(s)	543, 567, 711, 977
BfuAI	ACCTGC	1 cut(s)	209
BisI	GCNGC	4 cut(s)	114, 384, 759, 922
BlsI	GCNGC	4 cut(s)	115, 385, 760, 923
BmcAI	AGTACT	1 cut(s)	813
Bme1390I	CCNGG	2 cut(s)	471, 822
Bme18I	GGWCC	2 cut(s)	334, 860
BmeT110I	CYCGRG	2 cut(s)	37, 55
BmgT120I	GGNCC	4 cut(s)	60, 334, 473, 860
BmiI	GGNNCC	2 cut(s)	355, 895
BmrFI	CCNGG	2 cut(s)	471, 822
BmrI	ACTGGG	1 cut(s)	164
BmsI	GCATC	3 cut(s)	529, 540, 730
BmuI	ACTGGG	1 cut(s)	164
BoxI	GACNNNNGTC	1 cut(s)	17
BpiI	GAAGAC	2 cut(s)	311, 960
BpuEI	CTTGAG	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	2 cut(s)	343, 521
Bse118I	RCCGGY	1 cut(s)	379
Bse1I	ACTGG	2 cut(s)	170, 515
Bse3DI	GCAATG	1 cut(s)	325
BseBI	CCWGG	2 cut(s)	471, 822
BseLI	CCNNNNNNNGG	2 cut(s)	343, 521
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	1 cut(s)	633
BseNI	ACTGG	2 cut(s)	170, 515
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	3 cut(s)	370, 745, 933
BseYI	CCCAGC	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	5 cut(s)	61, 155, 194, 474, 775
BshNI	GGYRCC	1 cut(s)	353
BsiHKCI	CYCGRG	2 cut(s)	37, 55
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	2 cut(s)	20, 860
BslI	CCNNNNNNNGG	2 cut(s)	343, 521
BsmFI	GGGAC	2 cut(s)	20, 860
BsnI	GGCC	5 cut(s)	61, 155, 194, 474, 775
BsoBI	CYCGRG	2 cut(s)	37, 55
Bsp1407I	TGTACA	1 cut(s)	962
Bsp143I	GATC	2 cut(s)	235, 1017
BspACI	CCGC	4 cut(s)	113, 141, 351, 462
BspANI	GGCC	5 cut(s)	61, 155, 194, 474, 775
BspCNI	CTCAG	1 cut(s)	632
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	2 cut(s)	355, 895
BspMI	ACCTGC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	353
BsrBI	CCGCTC	1 cut(s)	351
BsrDI	GCAATG	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	379
BsrGI	TGTACA	1 cut(s)	962
BsrI	ACTGG	2 cut(s)	170, 515
BssAI	RCCGGY	1 cut(s)	379
BssMI	GATC	2 cut(s)	235, 1017
Bst2UI	CCWGG	2 cut(s)	471, 822
Bst4CI	ACNGT	4 cut(s)	91, 124, 343, 770
Bst6I	CTCTTC	1 cut(s)	657
BstAUI	TGTACA	1 cut(s)	962
BstC8I	GCNNGC	4 cut(s)	349, 381, 437, 750
BstDEI	CTNAG	1 cut(s)	619
BstFNI	CGCG	1 cut(s)	113
BstKTI	GATC	2 cut(s)	238, 1020
BstMBI	GATC	2 cut(s)	235, 1017
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 353, 749, 758
BstNI	CCWGG	2 cut(s)	471, 822
BstNSI	RCATGY	2 cut(s)	752, 972
BstPAI	GACNNNNGTC	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	469, 820
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	3 cut(s)	370, 745, 933
BstV2I	GAAGAC	2 cut(s)	311, 960
BsuRI	GGCC	5 cut(s)	61, 155, 194, 474, 775
BtsI	GCAGTG	1 cut(s)	644
BtsIMutI	CAGTG	4 cut(s)	120, 348, 644, 766
BveI	ACCTGC	1 cut(s)	209
Cac8I	GCNNGC	4 cut(s)	349, 381, 437, 750
CaiI	CAGNNNCTG	1 cut(s)	791
Cfr10I	RCCGGY	1 cut(s)	379
Cfr13I	GGNCC	4 cut(s)	60, 334, 473, 860
CsiI	ACCWGGT	1 cut(s)	820
Csp6I	GTAC	2 cut(s)	812, 963
CviAII	CATG	3 cut(s)	599, 749, 969
CviQI	GTAC	2 cut(s)	812, 963
DdeI	CTNAG	1 cut(s)	619
DpnI	GATC	2 cut(s)	237, 1019
DpnII	GATC	2 cut(s)	235, 1017
Eam1104I	CTCTTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	657
Eco47I	GGWCC	2 cut(s)	334, 860
Eco57I	CTGAAG	1 cut(s)	960
Eco88I	CYCGRG	2 cut(s)	37, 55
EcoRII	CCWGG	2 cut(s)	469, 820
FaeI	CATG	3 cut(s)	602, 752, 972
FalI	AAGNNNNNCTT	4 cut(s)	296, 328, 491, 523
FaqI	GGGAC	2 cut(s)	20, 860
FatI	CATG	3 cut(s)	598, 748, 968
Fnu4HI	GCNGC	4 cut(s)	114, 384, 759, 922
Fsp4HI	GCNGC	4 cut(s)	114, 384, 759, 922
FspBI	CTAG	4 cut(s)	543, 567, 711, 977
GluI	GCNGC	4 cut(s)	114, 384, 759, 922
GsaI	CCCAGC	1 cut(s)	81
HaeIII	GGCC	5 cut(s)	61, 155, 194, 474, 775
HapII	CCGG	1 cut(s)	380
Hin1II	CATG	3 cut(s)	602, 752, 972
HincII	GTYRAC	1 cut(s)	44
HindII	GTYRAC	1 cut(s)	44
HindIII	AAGCTT	1 cut(s)	445
HinfI	GANTC	6 cut(s)	40, 65, 263, 371, 403, 1000
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	5 cut(s)	79, 380, 568, 771, 956
Hpy166II	GTNNAC	2 cut(s)	44, 974
Hpy188I	TCNGA	3 cut(s)	622, 698, 940
Hpy188III	TCNNGA	6 cut(s)	37, 182, 400, 567, 611, 786
Hpy8I	GTNNAC	2 cut(s)	44, 974
Hpy99I	CGWCG	3 cut(s)	10, 13, 152
HpyAV	CCTTC	4 cut(s)	154, 786, 884, 935
HpyCH4III	ACNGT	4 cut(s)	91, 124, 343, 770
HpyCH4V	TGCA	2 cut(s)	204, 748
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 353, 749, 758
HpyF3I	CTNAG	1 cut(s)	619
Hsp92II	CATG	3 cut(s)	602, 752, 972
KroI	GCCGGC	1 cut(s)	379
KroNI	GCCGGC	1 cut(s)	381
Kzo9I	GATC	2 cut(s)	235, 1017
LmnI	GCTCC	1 cut(s)	788
Lsp1109I	GCAGC	3 cut(s)	370, 745, 933
LweI	GCATC	3 cut(s)	529, 540, 730
MabI	ACCWGGT	1 cut(s)	820
MaeI	CTAG	4 cut(s)	543, 567, 711, 977
MalI	GATC	2 cut(s)	237, 1019
MbiI	CCGCTC	1 cut(s)	351
MboI	GATC	2 cut(s)	235, 1017
MboII	GAAGA	5 cut(s)	126, 316, 674, 922, 965
MluCI	AATT	3 cut(s)	94, 801, 947
MlyI	GAGTC	4 cut(s)	49, 59, 272, 397
MroNI	GCCGGC	1 cut(s)	379
MseI	TTAA	4 cut(s)	93, 498, 509, 1039
MslI	CAYNNNNRTG	1 cut(s)	753
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	2 cut(s)	471, 822
MvaI	CCWGG	2 cut(s)	471, 822
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	4 cut(s)	67, 353, 749, 758
NaeI	GCCGGC	1 cut(s)	381
NdeII	GATC	2 cut(s)	235, 1017
NgoMIV	GCCGGC	1 cut(s)	379
NlaIII	CATG	3 cut(s)	602, 752, 972
NlaIV	GGNNCC	2 cut(s)	355, 895
NmeAIII	GCCGAG	1 cut(s)	27
NspI	RCATGY	2 cut(s)	752, 972
PaeI	GCATGC	1 cut(s)	752
PaeR7I	CTCGAG	1 cut(s)	55
PaqCI	CACCTGC	1 cut(s)	209
PdiI	GCCGGC	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	371, 1000
PkrI	GCNGC	4 cut(s)	115, 385, 760, 923
PleI	GAGTC	4 cut(s)	48, 59, 271, 397
PpsI	GAGTC	4 cut(s)	48, 59, 271, 397
PshAI	GACNNNNGTC	1 cut(s)	17
Psp6I	CCWGG	2 cut(s)	469, 820
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	2 cut(s)	469, 820
PspN4I	GGNNCC	2 cut(s)	355, 895
PspPI	GGNCC	4 cut(s)	60, 334, 473, 860
PspXI	VCTCGAGB	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	791
RsaI	GTAC	2 cut(s)	813, 964
RsaNI	GTAC	2 cut(s)	812, 963
RseI	CAYNNNNRTG	1 cut(s)	753
SaqAI	TTAA	4 cut(s)	93, 498, 509, 1039
SatI	GCNGC	4 cut(s)	114, 384, 759, 922
Sau3AI	GATC	2 cut(s)	235, 1017
Sau96I	GGNCC	4 cut(s)	60, 334, 473, 860
ScaI	AGTACT	1 cut(s)	813
SchI	GAGTC	4 cut(s)	49, 59, 272, 397
ScrFI	CCNGG	2 cut(s)	471, 822
SexAI	ACCWGGT	1 cut(s)	820
SfaNI	GCATC	3 cut(s)	529, 540, 730
Sfr274I	CTCGAG	1 cut(s)	55
SinI	GGWCC	2 cut(s)	334, 860
SlaI	CTCGAG	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	753
SmlI	CTYRAG	2 cut(s)	55, 71
SmoI	CTYRAG	2 cut(s)	55, 71
SpeI	ACTAGT	1 cut(s)	976
SphI	GCATGC	1 cut(s)	752
Sse9I	AATT	3 cut(s)	94, 801, 947
SsiI	CCGC	4 cut(s)	113, 141, 351, 462
SspMI	CTAG	4 cut(s)	543, 567, 711, 977
StyD4I	CCNGG	2 cut(s)	469, 820
TaaI	ACNGT	4 cut(s)	91, 124, 343, 770
TaqI	TCGA	3 cut(s)	56, 127, 150
TasI	AATT	3 cut(s)	94, 801, 947
TatI	WGTACW	2 cut(s)	811, 962
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	2 cut(s)	371, 1000
Tru1I	TTAA	4 cut(s)	93, 498, 509, 1039
Tru9I	TTAA	4 cut(s)	93, 498, 509, 1039
TscAI	CASTG	4 cut(s)	127, 348, 644, 773
TseI	GCWGC	3 cut(s)	383, 758, 921
TspDTI	ATGAA	2 cut(s)	234, 640
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	4 cut(s)	127, 348, 644, 773
VpaK11BI	GGWCC	2 cut(s)	334, 860
XbaI	TCTAGA	1 cut(s)	566
XceI	RCATGY	2 cut(s)	752, 972
XhoI	CTCGAG	1 cut(s)	55
XspI	CTAG	4 cut(s)	543, 567, 711, 977
ZrmI	AGTACT	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.