Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007867

Physical Location & Seq

Genomic Coordinates Reverse (-)

22522529 .. 22526016

Gene Structure 3488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1181700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGAGACGGTGGTCGGCAACCTCTGCTCCCCGTTTCTTCTGAGTCAACTCGGTAATTCAGGGCCTTGTCTTCTCAAGCTCAGGACTTCTGCTGCTTCACGGGTTTTCAAGCGCTGTTTCGCGGCGGCAATCAAAGTTCGAGCTGCTGCTTCGGGTGCCCTCGTCGAAGTCGAGCCAACCGAACCAATTGTGGTGCAAAATGATGGCATCAGCAGCAACAACATTTTAGCTTGTCCGATATGCTACGATCCACTTTCAAGTTCCGGTGATCCGGGCTTATCTGTTGAGTCTGCTTCTGGGTCTAGTTTTCAATGTGGCACTTGTAAGAAGACATACTTTGGCAACGAAACACATATTGACCTGACAACAGCAAGCGGCACCAAGGACTATGGTGAATCAATGCCCGTTACCACAGAAATATTTAGGACTCCATTGGTATCGTACCTCTATGAGAGGGGCTGGCGTCAAAGCTTTACTGTATGGGGTGGATTTCCTGGCCCAGAGAAAGAGTTTGAGTTGACTAAGGATTTCTTAAAGCCAGTCTTGGGTGGTGGAAATATCATTGATGCAAGTTGTGGGAGTGGGATGTTTTCTAGACTTTTCGCTAAGAGTGGATTGTTTTCTCTTGTTGTTGCTTTGGACTACTCAGAGAACATGTTGAAGGAGTGCTATGGATTCATTCAGCAGGAGGAGAACTTCCCCAAAGAGAACATGATCCTGGTCAGAGCTGATATTTCTCGGCTTCCCTTTGCTACTGGTTCTGTGGATGCAGTGCATGCTGGTGCTGCCATACATTGTTGGCCTTCACCATCAACAGCTGTTGCTGAAATTAGTCGAGTCCTGCGACCTGGGGGGGTGTTTGTTGCATCTACTTACATACTCGATGGGCCTTTTTCGCTCATCCCATTTCTAAGGAACATAACACAGAGAACAAAGCAAATATCGGGCGGCCAAGTCTTCACATCAGAAAGTGAATTAGAAGACATCTGTCAAGCTTGTGGACTAGTAGGTTTTACAAAAGTGAGGAATAGGCTTTTTGTGATGATTTCTGCCACAAAACCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

356

Amino Acids

38.23

Weight (kDa)

6.02

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	181 - 288	1.2e-09	ubiE/COQ5 methyltransferase family
Methyltransf_23	PF13489	181 - 335	6.5e-09	Methyltransferase domain
Methyltransf_31	PF13847	184 - 293	3.2e-13	Methyltransferase domain
Methyltransf_25	PF13649	187 - 285	1.6e-16	Methyltransferase domain
Methyltransf_11	PF08241	189 - 288	3.3e-21	Methyltransferase domain
Methyltransf_12	PF08242	189 - 287	1.4e-10	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78140
fragaria_vesca	FvH4_5g37670 FvH4_5g37670 FvH4_5g37670 FvH4_5g37670 FvH4_5g37670
malus_domestica	MD05G1202100.v1.1 MD08G1181500.v1.1 MD08G1181700.v1.1 MD15G1366900.v1.1
prunus_persica	Prupe.1G514900_v2.0.a1
pyrus_communis	pycom08g15490
rosa_chinensis	RchiOBHm_Chr7g0239331
rosa_laevigata	RLG00000000762
rosa_multiflora	Rmu_sc0007840.1_g000001 Rmu_sc0008456.1_g000004
rosa_roxburghii	Rroxscaffold_3G00221000
rosa_rugosa	Rorug07G0327500 Rorug07G0327500
rosa_samantha	Rh7AG480800 Rh7BG453600 Rh7CG498700 Rh7DG466800
rosa_wichuraiana	Rw7G040290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	155, 377
AccII	CGCG	1 cut(s)	122
AciI	CCGC	4 cut(s)	122, 125, 375, 948
AclWI	GGATC	3 cut(s)	242, 263, 709
AcoI	YGGCCR	1 cut(s)	949
AcyI	GRCGYC	1 cut(s)	463
AfaI	GTAC	1 cut(s)	443
AfeI	AGCGCT	1 cut(s)	113
AfiI	CCNNNNNNNGG	1 cut(s)	545
AflIII	ACRYGT	1 cut(s)	654
AgsI	TTSAA	4 cut(s)	109, 258, 311, 661
AhlI	ACTAGT	1 cut(s)	1003
AjnI	CCWGG	3 cut(s)	493, 717, 847
AluBI	AGCT	7 cut(s)	79, 143, 230, 471, 728, 818, 995
AluI	AGCT	7 cut(s)	79, 143, 230, 471, 728, 818, 995
AlwI	GGATC	3 cut(s)	242, 263, 709
Aor51HI	AGCGCT	1 cut(s)	113
AoxI	GGCC	5 cut(s)	62, 496, 800, 887, 949
ApeKI	GCWGC	5 cut(s)	92, 143, 146, 213, 785
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	3 cut(s)	62, 497, 887
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	3 cut(s)	278, 404, 798
BaeGI	GKGCMC	1 cut(s)	160
BanI	GGYRCC	2 cut(s)	155, 377
BbsI	GAAGAC	4 cut(s)	62, 335, 949, 987
BbvI	GCAGC	5 cut(s)	79, 130, 133, 225, 772
BccI	CCATC	3 cut(s)	197, 817, 878
BciT130I	CCWGG	3 cut(s)	495, 719, 849
BcnI	CCSGG	1 cut(s)	273
BcuI	ACTAGT	1 cut(s)	1003
BfaI	CTAG	3 cut(s)	303, 594, 1004
BfoI	RGCGCY	1 cut(s)	115
BisI	GCNGC	9 cut(s)	93, 123, 126, 144, 147, 214, 376, 786, 949
BlsI	GCNGC	9 cut(s)	94, 124, 127, 145, 148, 215, 377, 787, 950
Bme1390I	CCNGG	4 cut(s)	273, 495, 719, 849
BmgT120I	GGNCC	3 cut(s)	62, 497, 887
BmiI	GGNNCC	2 cut(s)	157, 379
BmrFI	CCNGG	4 cut(s)	273, 495, 719, 849
BmsI	GCATC	4 cut(s)	216, 556, 757, 875
BoxI	GACNNNNGTC	2 cut(s)	11, 987
BpiI	GAAGAC	4 cut(s)	62, 335, 949, 987
Bpu10I	CCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	463
BsaJI	CCNNGG	2 cut(s)	381, 848
BsaWI	WCCGGW	1 cut(s)	263
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	1 cut(s)	545
Bse1I	ACTGG	2 cut(s)	539, 760
BseBI	CCWGG	3 cut(s)	495, 719, 849
BseDI	CCNNGG	2 cut(s)	381, 848
BseGI	GGATG	3 cut(s)	591, 772, 900
BseLI	CCNNNNNNNGG	1 cut(s)	545
BseMII	CTCAG	3 cut(s)	32, 94, 660
BseNI	ACTGG	2 cut(s)	539, 760
BseRI	GAGGAG	1 cut(s)	704
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	5 cut(s)	79, 130, 133, 225, 772
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	5 cut(s)	64, 498, 802, 889, 951
BshNI	GGYRCC	2 cut(s)	155, 377
BsiSI	CCGG	2 cut(s)	264, 272
BslI	CCNNNNNNNGG	1 cut(s)	545
BsnI	GGCC	5 cut(s)	64, 498, 802, 889, 951
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	3 cut(s)	247, 268, 714
BspACI	CCGC	4 cut(s)	122, 125, 375, 948
BspANI	GGCC	5 cut(s)	64, 498, 802, 889, 951
BspCNI	CTCAG	3 cut(s)	33, 93, 659
BspFNI	CGCG	1 cut(s)	122
BspLI	GGNNCC	2 cut(s)	157, 379
BspPI	GGATC	3 cut(s)	242, 263, 709
BspT107I	GGYRCC	2 cut(s)	155, 377
BsrI	ACTGG	2 cut(s)	539, 760
BssECI	CCNNGG	2 cut(s)	381, 848
BssMI	GATC	3 cut(s)	247, 268, 714
BssNI	GRCGYC	1 cut(s)	463
BssT1I	CCWWGG	1 cut(s)	381
Bst2UI	CCWGG	3 cut(s)	495, 719, 849
Bst4CI	ACNGT	2 cut(s)	10, 478
BstACI	GRCGYC	1 cut(s)	463
BstAPI	GCANNNNNTGC	2 cut(s)	24, 776
BstC8I	GCNNGC	3 cut(s)	373, 461, 777
BstDEI	CTNAG	6 cut(s)	41, 80, 522, 606, 646, 911
BstF5I	GGATG	3 cut(s)	591, 772, 900
BstFNI	CGCG	1 cut(s)	122
BstH2I	RGCGCY	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	3 cut(s)	250, 271, 717
BstMBI	GATC	3 cut(s)	247, 268, 714
BstMWI	GCNNNNNNNGC	6 cut(s)	24, 155, 213, 776, 785, 895
BstNI	CCWGG	3 cut(s)	495, 719, 849
BstNSI	RCATGY	2 cut(s)	658, 779
BstPAI	GACNNNNGTC	2 cut(s)	11, 987
BstSCI	CCNGG	4 cut(s)	271, 493, 717, 847
BstSLI	GKGCMC	1 cut(s)	160
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	5 cut(s)	79, 130, 133, 225, 772
BstV2I	GAAGAC	4 cut(s)	62, 335, 949, 987
BsuRI	GGCC	5 cut(s)	64, 498, 802, 889, 951
BtsCI	GGATG	3 cut(s)	591, 772, 900
BtsI	GCAGTG	1 cut(s)	777
BtsIMutI	CAGTG	1 cut(s)	777
Cac8I	GCNNGC	3 cut(s)	373, 461, 777
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	3 cut(s)	62, 497, 887
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	3 cut(s)	655, 712, 776
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	6 cut(s)	41, 80, 522, 606, 646, 911
DpnI	GATC	3 cut(s)	249, 270, 716
DpnII	GATC	3 cut(s)	247, 268, 714
EaeI	YGGCCR	1 cut(s)	949
Eco130I	CCWWGG	1 cut(s)	381
Eco47III	AGCGCT	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	62
EcoRII	CCWGG	3 cut(s)	493, 717, 847
EcoT14I	CCWWGG	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	3 cut(s)	658, 715, 779
FalI	AAGNNNNNCTT	6 cut(s)	320, 352, 515, 547, 527, 559
FatI	CATG	3 cut(s)	654, 711, 775
Fnu4HI	GCNGC	9 cut(s)	93, 123, 126, 144, 147, 214, 376, 786, 949
FokI	GGATG	3 cut(s)	598, 779, 887
Fsp4HI	GCNGC	9 cut(s)	93, 123, 126, 144, 147, 214, 376, 786, 949
FspBI	CTAG	3 cut(s)	303, 594, 1004
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	9 cut(s)	93, 123, 126, 144, 147, 214, 376, 786, 949
HaeII	RGCGCY	1 cut(s)	115
HaeIII	GGCC	5 cut(s)	64, 498, 802, 889, 951
HapII	CCGG	2 cut(s)	264, 272
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	1 cut(s)	114
Hin1I	GRCGYC	1 cut(s)	463
Hin1II	CATG	3 cut(s)	658, 715, 779
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HincII	GTYRAC	2 cut(s)	47, 519
HindII	GTYRAC	2 cut(s)	47, 519
HindIII	AAGCTT	2 cut(s)	469, 993
HinfI	GANTC	6 cut(s)	43, 287, 395, 427, 675, 837
HpaII	CCGG	2 cut(s)	264, 272
HphI	GGTGA	3 cut(s)	278, 404, 798
Hpy166II	GTNNAC	3 cut(s)	47, 519, 1001
Hpy188I	TCNGA	5 cut(s)	42, 237, 649, 725, 967
Hpy188III	TCNNGA	2 cut(s)	82, 594
Hpy8I	GTNNAC	3 cut(s)	47, 519, 1001
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	655, 813
HpyCH4III	ACNGT	2 cut(s)	10, 478
HpyCH4V	TGCA	5 cut(s)	196, 569, 770, 775, 866
HpyF10VI	GCNNNNNNNGC	6 cut(s)	24, 155, 213, 776, 785, 895
HpyF3I	CTNAG	6 cut(s)	41, 80, 522, 606, 646, 911
Hsp92I	GRCGYC	1 cut(s)	463
Hsp92II	CATG	3 cut(s)	658, 715, 779
HspAI	GCGC	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	247, 268, 714
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	5 cut(s)	79, 130, 133, 225, 772
LweI	GCATC	4 cut(s)	216, 556, 757, 875
MaeI	CTAG	3 cut(s)	303, 594, 1004
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	3 cut(s)	249, 270, 716
MboI	GATC	3 cut(s)	247, 268, 714
MboII	GAAGA	5 cut(s)	29, 62, 340, 949, 992
MfeI	CAATTG	1 cut(s)	186
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	4 cut(s)	55, 186, 828, 974
MlyI	GAGTC	4 cut(s)	52, 296, 421, 846
MnlI	CCTC	6 cut(s)	32, 170, 447, 455, 682, 1017
MseI	TTAA	2 cut(s)	533, 1066
MslI	CAYNNNNRTG	1 cut(s)	780
MspA1I	CMGCKG	1 cut(s)	818
MspI	CCGG	2 cut(s)	264, 272
MspR9I	CCNGG	4 cut(s)	273, 495, 719, 849
MunI	CAATTG	1 cut(s)	186
MvaI	CCWGG	3 cut(s)	495, 719, 849
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	6 cut(s)	24, 155, 213, 776, 785, 895
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	3 cut(s)	247, 268, 714
NlaIII	CATG	3 cut(s)	658, 715, 779
NlaIV	GGNNCC	2 cut(s)	157, 379
NmeAIII	GCCGAG	1 cut(s)	718
NspI	RCATGY	2 cut(s)	658, 779
PaeI	GCATGC	1 cut(s)	779
PciI	ACATGT	1 cut(s)	654
PcsI	WCGNNNNNNNCGW	3 cut(s)	168, 177, 841
PfeI	GAWTC	2 cut(s)	395, 675
PkrI	GCNGC	9 cut(s)	94, 124, 127, 145, 148, 215, 377, 787, 950
PleI	GAGTC	4 cut(s)	51, 295, 421, 845
PpsI	GAGTC	4 cut(s)	51, 295, 421, 845
PscI	ACATGT	1 cut(s)	654
PshAI	GACNNNNGTC	2 cut(s)	11, 987
Psp6I	CCWGG	3 cut(s)	493, 717, 847
PspGI	CCWGG	3 cut(s)	493, 717, 847
PspN4I	GGNNCC	2 cut(s)	157, 379
PspPI	GGNCC	3 cut(s)	62, 497, 887
PvuII	CAGCTG	1 cut(s)	818
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
RseI	CAYNNNNRTG	1 cut(s)	780
SaqAI	TTAA	2 cut(s)	533, 1066
SatI	GCNGC	9 cut(s)	93, 123, 126, 144, 147, 214, 376, 786, 949
Sau3AI	GATC	3 cut(s)	247, 268, 714
Sau96I	GGNCC	3 cut(s)	62, 497, 887
SchI	GAGTC	4 cut(s)	52, 296, 421, 846
ScrFI	CCNGG	4 cut(s)	273, 495, 719, 849
SduI	GDGCHC	1 cut(s)	160
SfaNI	GCATC	4 cut(s)	216, 556, 757, 875
SmiMI	CAYNNNNRTG	1 cut(s)	780
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SpeI	ACTAGT	1 cut(s)	1003
SphI	GCATGC	1 cut(s)	779
Sse9I	AATT	4 cut(s)	55, 186, 828, 974
SsiI	CCGC	4 cut(s)	122, 125, 375, 948
SspI	AATATT	1 cut(s)	420
SspMI	CTAG	3 cut(s)	303, 594, 1004
StyD4I	CCNGG	4 cut(s)	271, 493, 717, 847
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	2 cut(s)	10, 478
TaqI	TCGA	5 cut(s)	139, 165, 171, 835, 882
TasI	AATT	4 cut(s)	55, 186, 828, 974
TauI	GCSGC	4 cut(s)	125, 128, 378, 951
TfiI	GAWTC	2 cut(s)	395, 675
Tru1I	TTAA	2 cut(s)	533, 1066
Tru9I	TTAA	2 cut(s)	533, 1066
TscAI	CASTG	1 cut(s)	777
TseI	GCWGC	5 cut(s)	92, 143, 146, 213, 785
TspDTI	ATGAA	1 cut(s)	667
TspRI	CASTG	1 cut(s)	777
XbaI	TCTAGA	1 cut(s)	593
XceI	RCATGY	2 cut(s)	658, 779
XspI	CTAG	3 cut(s)	303, 594, 1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.