Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008456.1

Orthogroup ID

OG0007867

Physical Location & Seq

Genomic Coordinates Forward (+)

14271 .. 18809

Gene Structure 4539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008456.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atggcgacgacgaccctcgtcagcaacctctctctcccgagtcaactcggcaactcgaggcccgactcgctcaagcccaaccctttcaccgttaatttcaaacgctctttcgcggcaatcactgttcgagcttcttccaccgccctcgtcgaggccaccccaactgacccagttgaggttcaggataatgaggccaccacctgcaacgacttgtttgcttgtcctatatgctttgatccattttcatcaaatggggagtctggttctgggtcaggttttgaatgtagcacttgtaagaagacttactttggcaatgagatacatttggacctgacagtggcgagcggtgccaagaactatggtgaatcgatgccggctgccacagagattttcaggactccgttggtatctttcctctatgagaggggctggcgacaaagcttttcggtatggggcggttttcctggcccagagaaagagtttgagttgattaaggattacttaaaaccagtcttgggtggtagcatcattgatgctagttgtgggagtgggttattttctagacttttcgccaagagtggattgttttctcatgttgttgctcttgactactcagaaaatatgttgaagcagtgctatgagttcattgaaaaggaagagaacttccccaaagagaacataactttggtcagagctgatatttctaggcttccctttgctacaagttctgttgatgctgtgcatgctggtgctgcgatacactgttggccttcaccatcaggagctagaacaaggcaaatatcgggcagccaaatcttcctatctgaaggtgaattagaagacatctgtacggcatgtgggctagtaggttttacagccgtgaggaatcggttatttgtgatgatctctgccacaaaaccaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

308

Amino Acids

33.35

Weight (kDa)

5.25

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78140
fragaria_vesca	FvH4_5g37670 FvH4_5g37670 FvH4_5g37670 FvH4_5g37670 FvH4_5g37670
malus_domestica	MD05G1202100.v1.1 MD08G1181500.v1.1 MD08G1181700.v1.1 MD15G1366900.v1.1
prunus_persica	Prupe.1G514900_v2.0.a1
pyrus_communis	pycom08g15490
rosa_chinensis	RchiOBHm_Chr7g0239331
rosa_laevigata	RLG00000000762
rosa_multiflora	Rmu_sc0007840.1_g000001 Rmu_sc0008456.1_g000004
rosa_roxburghii	Rroxscaffold_3G00221000
rosa_rugosa	Rorug07G0327500 Rorug07G0327500
rosa_samantha	Rh7AG480800 Rh7BG453600 Rh7CG498700 Rh7DG466800
rosa_wichuraiana	Rw7G040290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	209
AccB1I	GGYRCC	1 cut(s)	347
AccBSI	CCGCTC	1 cut(s)	345
AccII	CGCG	1 cut(s)	113
AciI	CCGC	4 cut(s)	113, 141, 345, 456
AclWI	GGATC	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	846
AfaI	GTAC	1 cut(s)	850
AfiI	CCNNNNNNNGG	4 cut(s)	151, 175, 337, 515
AgsI	TTSAA	4 cut(s)	100, 281, 628, 650
AjnI	CCWGG	1 cut(s)	463
AjuI	GAANNNNNNNTTGG	2 cut(s)	668, 700
AluBI	AGCT	4 cut(s)	131, 441, 695, 785
AluI	AGCT	4 cut(s)	131, 441, 695, 785
AlwI	GGATC	1 cut(s)	230
Ama87I	CYCGRG	2 cut(s)	37, 55
AoxI	GGCC	5 cut(s)	59, 153, 192, 466, 767
ApeKI	GCWGC	3 cut(s)	377, 752, 807
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AspS9I	GGNCC	3 cut(s)	60, 328, 467
AsuHPI	GGTGA	4 cut(s)	79, 374, 765, 842
AvaI	CYCGRG	2 cut(s)	37, 55
AvaII	GGWCC	1 cut(s)	328
BanI	GGYRCC	1 cut(s)	347
BbsI	GAAGAC	2 cut(s)	305, 846
BbvI	GCAGC	3 cut(s)	364, 739, 819
BccI	CCATC	1 cut(s)	784
BceAI	ACGGC	2 cut(s)	863, 867
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BciT130I	CCWGG	1 cut(s)	465
BfaI	CTAG	5 cut(s)	537, 561, 705, 786, 863
BfuAI	ACCTGC	1 cut(s)	209
BisI	GCNGC	4 cut(s)	114, 378, 753, 808
BlsI	GCNGC	4 cut(s)	115, 379, 754, 809
Bme1390I	CCNGG	1 cut(s)	465
Bme18I	GGWCC	1 cut(s)	328
BmeT110I	CYCGRG	2 cut(s)	37, 55
BmgT120I	GGNCC	3 cut(s)	60, 328, 467
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	465
BmrI	ACTGGG	1 cut(s)	164
BmsI	GCATC	4 cut(s)	360, 523, 534, 724
BmuI	ACTGGG	1 cut(s)	164
BoxI	GACNNNNGTC	1 cut(s)	17
BpiI	GAAGAC	2 cut(s)	305, 846
BpuEI	CTTGAG	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	4 cut(s)	151, 175, 337, 515
Bse118I	RCCGGY	1 cut(s)	373
Bse1I	ACTGG	2 cut(s)	170, 509
Bse3DI	GCAATG	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	465
BseCI	ATCGAT	1 cut(s)	368
BseLI	CCNNNNNNNGG	4 cut(s)	151, 175, 337, 515
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	1 cut(s)	627
BseNI	ACTGG	2 cut(s)	170, 509
BseXI	GCAGC	3 cut(s)	364, 739, 819
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	5 cut(s)	61, 155, 194, 468, 769
BshNI	GGYRCC	1 cut(s)	347
BshVI	ATCGAT	1 cut(s)	368
BsiHKCI	CYCGRG	2 cut(s)	37, 55
BsiSI	CCGG	1 cut(s)	374
BslI	CCNNNNNNNGG	4 cut(s)	151, 175, 337, 515
BsnI	GGCC	5 cut(s)	61, 155, 194, 468, 769
BsoBI	CYCGRG	2 cut(s)	37, 55
Bsp143I	GATC	2 cut(s)	235, 903
BspACI	CCGC	4 cut(s)	113, 141, 345, 456
BspANI	GGCC	5 cut(s)	61, 155, 194, 468, 769
BspCNI	CTCAG	1 cut(s)	626
BspDI	ATCGAT	1 cut(s)	368
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	349
BspMI	ACCTGC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	347
BsrBI	CCGCTC	1 cut(s)	345
BsrDI	GCAATG	1 cut(s)	319
BsrFI	RCCGGY	1 cut(s)	373
BsrI	ACTGG	2 cut(s)	170, 509
BssAI	RCCGGY	1 cut(s)	373
BssMI	GATC	2 cut(s)	235, 903
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	4 cut(s)	91, 124, 337, 764
Bst6I	CTCTTC	1 cut(s)	651
BstC8I	GCNNGC	4 cut(s)	343, 375, 431, 744
BstDEI	CTNAG	1 cut(s)	613
BstENI	CCTNNNNNAGG	1 cut(s)	149
BstFNI	CGCG	1 cut(s)	113
BstKTI	GATC	2 cut(s)	238, 906
BstMBI	GATC	2 cut(s)	235, 903
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 347, 743, 752
BstNI	CCWGG	1 cut(s)	465
BstNSI	RCATGY	2 cut(s)	746, 858
BstPAI	GACNNNNGTC	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	463
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	3 cut(s)	364, 739, 819
BstV2I	GAAGAC	2 cut(s)	305, 846
Bsu15I	ATCGAT	1 cut(s)	368
BsuRI	GGCC	5 cut(s)	61, 155, 194, 468, 769
BsuTUI	ATCGAT	1 cut(s)	368
BtsI	GCAGTG	1 cut(s)	638
BtsIMutI	CAGTG	4 cut(s)	120, 342, 638, 760
BveI	ACCTGC	1 cut(s)	209
Cac8I	GCNNGC	4 cut(s)	343, 375, 431, 744
Cfr10I	RCCGGY	1 cut(s)	373
Cfr13I	GGNCC	3 cut(s)	60, 328, 467
ClaI	ATCGAT	1 cut(s)	368
Csp6I	GTAC	1 cut(s)	849
CviAII	CATG	3 cut(s)	593, 743, 855
CviQI	GTAC	1 cut(s)	849
DdeI	CTNAG	1 cut(s)	613
DpnI	GATC	2 cut(s)	237, 905
DpnII	GATC	2 cut(s)	235, 903
Eam1104I	CTCTTC	1 cut(s)	651
EarI	CTCTTC	1 cut(s)	651
Eco47I	GGWCC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	846
Eco88I	CYCGRG	2 cut(s)	37, 55
EcoNI	CCTNNNNNAGG	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	463
FaeI	CATG	3 cut(s)	596, 746, 858
FalI	AAGNNNNNCTT	4 cut(s)	290, 322, 485, 517
FatI	CATG	3 cut(s)	592, 742, 854
Fnu4HI	GCNGC	4 cut(s)	114, 378, 753, 808
Fsp4HI	GCNGC	4 cut(s)	114, 378, 753, 808
FspBI	CTAG	5 cut(s)	537, 561, 705, 786, 863
GluI	GCNGC	4 cut(s)	114, 378, 753, 808
HaeIII	GGCC	5 cut(s)	61, 155, 194, 468, 769
HapII	CCGG	1 cut(s)	374
Hin1II	CATG	3 cut(s)	596, 746, 858
HincII	GTYRAC	1 cut(s)	44
HindII	GTYRAC	1 cut(s)	44
HindIII	AAGCTT	1 cut(s)	439
HinfI	GANTC	6 cut(s)	40, 65, 257, 365, 397, 886
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	4 cut(s)	79, 374, 765, 842
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	3 cut(s)	616, 692, 826
Hpy188III	TCNNGA	6 cut(s)	37, 182, 394, 561, 605, 780
Hpy8I	GTNNAC	1 cut(s)	44
Hpy99I	CGWCG	3 cut(s)	10, 13, 152
HpyAV	CCTTC	2 cut(s)	780, 821
HpyCH4III	ACNGT	4 cut(s)	91, 124, 337, 764
HpyCH4V	TGCA	2 cut(s)	204, 742
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 347, 743, 752
HpyF3I	CTNAG	1 cut(s)	613
Hsp92II	CATG	3 cut(s)	596, 746, 858
KroI	GCCGGC	1 cut(s)	373
KroNI	GCCGGC	1 cut(s)	375
Kzo9I	GATC	2 cut(s)	235, 903
LmnI	GCTCC	1 cut(s)	782
Lsp1109I	GCAGC	3 cut(s)	364, 739, 819
LweI	GCATC	4 cut(s)	360, 523, 534, 724
MaeI	CTAG	5 cut(s)	537, 561, 705, 786, 863
MalI	GATC	2 cut(s)	237, 905
MbiI	CCGCTC	1 cut(s)	345
MboI	GATC	2 cut(s)	235, 903
MboII	GAAGA	5 cut(s)	126, 310, 668, 808, 851
MluCI	AATT	2 cut(s)	94, 833
MlyI	GAGTC	4 cut(s)	49, 59, 266, 391
MroNI	GCCGGC	1 cut(s)	373
MseI	TTAA	4 cut(s)	93, 492, 503, 925
MslI	CAYNNNNRTG	1 cut(s)	747
MspI	CCGG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	465
MvaI	CCWGG	1 cut(s)	465
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	4 cut(s)	67, 347, 743, 752
NaeI	GCCGGC	1 cut(s)	375
NdeII	GATC	2 cut(s)	235, 903
NgoMIV	GCCGGC	1 cut(s)	373
NlaIII	CATG	3 cut(s)	596, 746, 858
NlaIV	GGNNCC	1 cut(s)	349
NmeAIII	GCCGAG	1 cut(s)	27
NspI	RCATGY	2 cut(s)	746, 858
PaeI	GCATGC	1 cut(s)	746
PaeR7I	CTCGAG	1 cut(s)	55
PaqCI	CACCTGC	1 cut(s)	209
PdiI	GCCGGC	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	365, 886
PkrI	GCNGC	4 cut(s)	115, 379, 754, 809
PleI	GAGTC	4 cut(s)	48, 59, 265, 391
PpsI	GAGTC	4 cut(s)	48, 59, 265, 391
PshAI	GACNNNNGTC	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	3 cut(s)	60, 328, 467
PspXI	VCTCGAGB	1 cut(s)	55
RsaI	GTAC	1 cut(s)	850
RsaNI	GTAC	1 cut(s)	849
RseI	CAYNNNNRTG	1 cut(s)	747
SaqAI	TTAA	4 cut(s)	93, 492, 503, 925
SatI	GCNGC	4 cut(s)	114, 378, 753, 808
Sau3AI	GATC	2 cut(s)	235, 903
Sau96I	GGNCC	3 cut(s)	60, 328, 467
SchI	GAGTC	4 cut(s)	49, 59, 266, 391
ScrFI	CCNGG	1 cut(s)	465
SfaNI	GCATC	4 cut(s)	360, 523, 534, 724
Sfr274I	CTCGAG	1 cut(s)	55
SinI	GGWCC	1 cut(s)	328
SlaI	CTCGAG	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	747
SmlI	CTYRAG	2 cut(s)	55, 71
SmoI	CTYRAG	2 cut(s)	55, 71
SphI	GCATGC	1 cut(s)	746
Sse9I	AATT	2 cut(s)	94, 833
SsiI	CCGC	4 cut(s)	113, 141, 345, 456
SspMI	CTAG	5 cut(s)	537, 561, 705, 786, 863
StyD4I	CCNGG	1 cut(s)	463
TaaI	ACNGT	4 cut(s)	91, 124, 337, 764
TaqI	TCGA	4 cut(s)	56, 127, 150, 368
TasI	AATT	2 cut(s)	94, 833
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	2 cut(s)	365, 886
Tru1I	TTAA	4 cut(s)	93, 492, 503, 925
Tru9I	TTAA	4 cut(s)	93, 492, 503, 925
TscAI	CASTG	4 cut(s)	127, 342, 638, 767
TseI	GCWGC	3 cut(s)	377, 752, 807
TspDTI	ATGAA	2 cut(s)	234, 634
TspGWI	ACGGA	1 cut(s)	390
TspRI	CASTG	4 cut(s)	127, 342, 638, 767
VpaK11BI	GGWCC	1 cut(s)	328
XagI	CCTNNNNNAGG	1 cut(s)	149
XbaI	TCTAGA	1 cut(s)	560
XceI	RCATGY	2 cut(s)	746, 858
XhoI	CTCGAG	1 cut(s)	55
XspI	CTAG	5 cut(s)	537, 561, 705, 786, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.