Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007867

Physical Location & Seq

Genomic Coordinates Reverse (-)

3655287 .. 3660004

Gene Structure 4718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00221000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCGACCACGACCCTCACCAGCAACCTCTCTCTCCCGAGTCAACTCGGCAACTCGAGGCCCGACTCGCTCAAGCCCAAGCCTTTCAACGTTAATTTGAAACGCTCTTTCGCGGCCATCGCTGTTCGAGCTTCTTCCACTGCCTTCGTCGAGACCACCCCAACTGACCCGGTTGAGGTTCAGGATAATGAGGCCACCACCTGCAACGACTTGTTTGCTTGTCCTATATGCTTTGATCCATTTTCATCAAATGGTGAGTCTGGTTCTGGGTCAGTTTTTGAATGTAGCACTTGTAAGAAGACTTACTTTGGCAATGAGATACATTTGGACCTCACAGTGGCGAGCGGTGCCAAGAACTATGGTGAATCGATGCCGGCTTCCACAGAGATTTTCAGGACTCCGTTGGTATCTTTCCTCTATGAGAGGGGCTGGCGACAAAGCTTTTCGGTATGGGGCGGTTTTCCTGGCCCAGAGAAAGAGTTTGAGTTGATTAAGGATTACTTAAAACCAGTCTTGGGTGGTAGCATCATTGATGCTAGTTGTGGGAGTGGGTTACTTTCTAGACTTTTCGCCAAGAGTGGATTGTTTTCTCATGTTGTTGCTCTTGACTACTCAGAAAATATGTTGAAGCAGTGCTATGAGTTTATTGAAAAGGAAGAGAACTTCCCCAAAGAGAACATAACTTTGGTCAGAGCTGATATTTCTAGGCTTCCCTTTGCTACAAGTTCTGTTGATGCTGTGCATGCTGGTGCTGCGATACACTGTTGGCCTTCACCATCAGGAGCTGTTGCTGAAATTAGCAGAGTACTGCGACCTGGTGGGGTGTTTGTTGCGACAACTTACATACTTGATGGTCCTTTTTCCTTTGTCCCATTTTTGAGGGAAGGAACCAAGAGAACAAGGCAAATATCGGGCAGCCAAATCTTCCTATCTGAAGGTGAATTAGAAGACATCTGTACAGCATGTGGGCTAGTAGGTTTTACAGCCGTGAGGAATCGGTTATTTGTGATGCTCTCTGCCACAAAACCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

344

Amino Acids

37.32

Weight (kDa)

5.55

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	167 - 278	2.3e-10	ubiE/COQ5 methyltransferase family
Methyltransf_23	PF13489	170 - 281	3.5e-07	Methyltransferase domain
Methyltransf_31	PF13847	174 - 281	4.4e-16	Methyltransferase domain
Methyltransf_25	PF13649	176 - 274	7.5e-19	Methyltransferase domain
Methyltransf_11	PF08241	178 - 277	1.3e-22	Methyltransferase domain
Methyltransf_12	PF08242	178 - 276	5.2e-13	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78140
fragaria_vesca	FvH4_5g37670 FvH4_5g37670 FvH4_5g37670 FvH4_5g37670 FvH4_5g37670
malus_domestica	MD05G1202100.v1.1 MD08G1181500.v1.1 MD08G1181700.v1.1 MD15G1366900.v1.1
prunus_persica	Prupe.1G514900_v2.0.a1
pyrus_communis	pycom08g15490
rosa_chinensis	RchiOBHm_Chr7g0239331
rosa_laevigata	RLG00000000762
rosa_multiflora	Rmu_sc0007840.1_g000001 Rmu_sc0008456.1_g000004
rosa_roxburghii	Rroxscaffold_3G00221000
rosa_rugosa	Rorug07G0327500 Rorug07G0327500
rosa_samantha	Rh7AG480800 Rh7BG453600 Rh7CG498700 Rh7DG466800
rosa_wichuraiana	Rw7G040290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	209
AccB1I	GGYRCC	1 cut(s)	347
AccBSI	CCGCTC	1 cut(s)	345
AccII	CGCG	1 cut(s)	113
AciI	CCGC	3 cut(s)	113, 345, 456
AclI	AACGTT	1 cut(s)	90
AclWI	GGATC	1 cut(s)	230
AcoI	YGGCCR	1 cut(s)	114
AcuI	CTGAAG	1 cut(s)	954
AfaI	GTAC	2 cut(s)	807, 958
AfiI	CCNNNNNNNGG	3 cut(s)	175, 337, 515
AgsI	TTSAA	5 cut(s)	88, 100, 281, 628, 650
AjnI	CCWGG	2 cut(s)	463, 814
AjuI	GAANNNNNNNTTGG	2 cut(s)	668, 700
AluBI	AGCT	4 cut(s)	131, 441, 695, 785
AluI	AGCT	4 cut(s)	131, 441, 695, 785
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	230
AlwNI	CAGNNNCTG	1 cut(s)	785
Ama87I	CYCGRG	2 cut(s)	37, 55
AoxI	GGCC	5 cut(s)	59, 114, 192, 466, 767
ApeKI	GCWGC	2 cut(s)	752, 915
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AspS9I	GGNCC	4 cut(s)	60, 328, 467, 854
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	5 cut(s)	10, 266, 374, 765, 950
AvaI	CYCGRG	2 cut(s)	37, 55
AvaII	GGWCC	2 cut(s)	328, 854
BanI	GGYRCC	1 cut(s)	347
BbsI	GAAGAC	2 cut(s)	305, 954
BbvI	GCAGC	2 cut(s)	739, 927
BccI	CCATC	3 cut(s)	125, 784, 845
BceAI	ACGGC	1 cut(s)	971
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BciT130I	CCWGG	2 cut(s)	465, 816
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	4 cut(s)	537, 561, 705, 971
BfuAI	ACCTGC	1 cut(s)	209
BisI	GCNGC	3 cut(s)	114, 753, 916
BlsI	GCNGC	3 cut(s)	115, 754, 917
BmcAI	AGTACT	1 cut(s)	807
Bme1390I	CCNGG	3 cut(s)	170, 465, 816
Bme18I	GGWCC	2 cut(s)	328, 854
BmeT110I	CYCGRG	2 cut(s)	37, 55
BmgT120I	GGNCC	4 cut(s)	60, 328, 467, 854
BmiI	GGNNCC	2 cut(s)	349, 889
BmrFI	CCNGG	3 cut(s)	170, 465, 816
BmsI	GCATC	5 cut(s)	360, 523, 534, 724, 999
BpiI	GAAGAC	2 cut(s)	305, 954
BpuEI	CTTGAG	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	170
Bsa29I	ATCGAT	1 cut(s)	368
BsaI	GGTCTC	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 337, 515
Bse118I	RCCGGY	1 cut(s)	373
Bse1I	ACTGG	1 cut(s)	509
Bse3DI	GCAATG	1 cut(s)	319
BseBI	CCWGG	2 cut(s)	465, 816
BseCI	ATCGAT	1 cut(s)	368
BseLI	CCNNNNNNNGG	3 cut(s)	175, 337, 515
BseMI	GCAATG	1 cut(s)	319
BseMII	CTCAG	1 cut(s)	627
BseNI	ACTGG	1 cut(s)	509
BseXI	GCAGC	2 cut(s)	739, 927
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	5 cut(s)	61, 116, 194, 468, 769
BshNI	GGYRCC	1 cut(s)	347
BshVI	ATCGAT	1 cut(s)	368
BsiHKCI	CYCGRG	2 cut(s)	37, 55
BsiSI	CCGG	2 cut(s)	170, 374
BslFI	GGGAC	1 cut(s)	854
BslI	CCNNNNNNNGG	3 cut(s)	175, 337, 515
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	854
BsnI	GGCC	5 cut(s)	61, 116, 194, 468, 769
Bso31I	GGTCTC	1 cut(s)	146
BsoBI	CYCGRG	2 cut(s)	37, 55
Bsp1407I	TGTACA	1 cut(s)	956
Bsp143I	GATC	1 cut(s)	235
BspACI	CCGC	3 cut(s)	113, 345, 456
BspANI	GGCC	5 cut(s)	61, 116, 194, 468, 769
BspCNI	CTCAG	1 cut(s)	626
BspDI	ATCGAT	1 cut(s)	368
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	2 cut(s)	349, 889
BspMI	ACCTGC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	146
BsrBI	CCGCTC	1 cut(s)	345
BsrDI	GCAATG	1 cut(s)	319
BsrFI	RCCGGY	1 cut(s)	373
BsrGI	TGTACA	1 cut(s)	956
BsrI	ACTGG	1 cut(s)	509
BssAI	RCCGGY	1 cut(s)	373
BssMI	GATC	1 cut(s)	235
Bst2UI	CCWGG	2 cut(s)	465, 816
Bst4CI	ACNGT	2 cut(s)	337, 764
Bst6I	CTCTTC	1 cut(s)	651
BstAUI	TGTACA	1 cut(s)	956
BstC8I	GCNNGC	4 cut(s)	343, 375, 431, 744
BstDEI	CTNAG	1 cut(s)	613
BstFNI	CGCG	1 cut(s)	113
BstKTI	GATC	1 cut(s)	238
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	6 cut(s)	67, 119, 128, 347, 743, 752
BstNI	CCWGG	2 cut(s)	465, 816
BstNSI	RCATGY	2 cut(s)	746, 966
BstSCI	CCNGG	3 cut(s)	168, 463, 814
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	2 cut(s)	739, 927
BstV2I	GAAGAC	2 cut(s)	305, 954
Bsu15I	ATCGAT	1 cut(s)	368
BsuRI	GGCC	5 cut(s)	61, 116, 194, 468, 769
BsuTUI	ATCGAT	1 cut(s)	368
BtgZI	GCGATG	1 cut(s)	103
BtsI	GCAGTG	2 cut(s)	138, 638
BtsIMutI	CAGTG	4 cut(s)	138, 342, 638, 760
BveI	ACCTGC	1 cut(s)	209
Cac8I	GCNNGC	4 cut(s)	343, 375, 431, 744
CaiI	CAGNNNCTG	1 cut(s)	785
Cfr10I	RCCGGY	1 cut(s)	373
Cfr13I	GGNCC	4 cut(s)	60, 328, 467, 854
ClaI	ATCGAT	1 cut(s)	368
CsiI	ACCWGGT	1 cut(s)	814
Csp6I	GTAC	2 cut(s)	806, 957
CviAII	CATG	3 cut(s)	593, 743, 963
CviQI	GTAC	2 cut(s)	806, 957
DdeI	CTNAG	1 cut(s)	613
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	651
EarI	CTCTTC	1 cut(s)	651
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	2 cut(s)	328, 854
Eco57I	CTGAAG	1 cut(s)	954
Eco88I	CYCGRG	2 cut(s)	37, 55
EcoRII	CCWGG	2 cut(s)	463, 814
FaeI	CATG	3 cut(s)	596, 746, 966
FalI	AAGNNNNNCTT	4 cut(s)	290, 322, 485, 517
FaqI	GGGAC	1 cut(s)	854
FatI	CATG	3 cut(s)	592, 742, 962
Fnu4HI	GCNGC	3 cut(s)	114, 753, 916
Fsp4HI	GCNGC	3 cut(s)	114, 753, 916
FspBI	CTAG	4 cut(s)	537, 561, 705, 971
GluI	GCNGC	3 cut(s)	114, 753, 916
HaeIII	GGCC	5 cut(s)	61, 116, 194, 468, 769
HapII	CCGG	2 cut(s)	170, 374
Hin1II	CATG	3 cut(s)	596, 746, 966
HincII	GTYRAC	1 cut(s)	44
HindII	GTYRAC	1 cut(s)	44
HindIII	AAGCTT	1 cut(s)	439
HinfI	GANTC	6 cut(s)	40, 65, 257, 365, 397, 994
HpaII	CCGG	2 cut(s)	170, 374
HphI	GGTGA	5 cut(s)	10, 266, 374, 765, 950
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	3 cut(s)	616, 692, 934
Hpy188III	TCNNGA	7 cut(s)	37, 151, 182, 394, 561, 605, 780
Hpy8I	GTNNAC	1 cut(s)	44
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	4 cut(s)	154, 780, 878, 929
HpyCH4III	ACNGT	2 cut(s)	337, 764
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	2 cut(s)	204, 742
HpyF10VI	GCNNNNNNNGC	6 cut(s)	67, 119, 128, 347, 743, 752
HpyF3I	CTNAG	1 cut(s)	613
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	3 cut(s)	596, 746, 966
KroI	GCCGGC	1 cut(s)	373
KroNI	GCCGGC	1 cut(s)	375
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	782
Lsp1109I	GCAGC	2 cut(s)	739, 927
LweI	GCATC	5 cut(s)	360, 523, 534, 724, 999
MabI	ACCWGGT	1 cut(s)	814
MaeI	CTAG	4 cut(s)	537, 561, 705, 971
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	552
MalI	GATC	1 cut(s)	237
MbiI	CCGCTC	1 cut(s)	345
MboI	GATC	1 cut(s)	235
MboII	GAAGA	5 cut(s)	126, 310, 668, 916, 959
MluCI	AATT	3 cut(s)	94, 795, 941
MlyI	GAGTC	4 cut(s)	49, 59, 266, 391
MroNI	GCCGGC	1 cut(s)	373
MseI	TTAA	4 cut(s)	93, 492, 503, 1033
MslI	CAYNNNNRTG	1 cut(s)	747
MspI	CCGG	2 cut(s)	170, 374
MspR9I	CCNGG	3 cut(s)	170, 465, 816
MvaI	CCWGG	2 cut(s)	465, 816
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	6 cut(s)	67, 119, 128, 347, 743, 752
NaeI	GCCGGC	1 cut(s)	375
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	1 cut(s)	235
NgoMIV	GCCGGC	1 cut(s)	373
NlaIII	CATG	3 cut(s)	596, 746, 966
NlaIV	GGNNCC	2 cut(s)	349, 889
NmeAIII	GCCGAG	1 cut(s)	27
NspI	RCATGY	2 cut(s)	746, 966
PaeI	GCATGC	1 cut(s)	746
PaeR7I	CTCGAG	1 cut(s)	55
PaqCI	CACCTGC	1 cut(s)	209
PdiI	GCCGGC	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	365, 994
PkrI	GCNGC	3 cut(s)	115, 754, 917
PleI	GAGTC	4 cut(s)	48, 59, 265, 391
PpsI	GAGTC	4 cut(s)	48, 59, 265, 391
Psp1406I	AACGTT	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	463, 814
PspGI	CCWGG	2 cut(s)	463, 814
PspN4I	GGNNCC	2 cut(s)	349, 889
PspPI	GGNCC	4 cut(s)	60, 328, 467, 854
PspXI	VCTCGAGB	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	785
RsaI	GTAC	2 cut(s)	807, 958
RsaNI	GTAC	2 cut(s)	806, 957
RseI	CAYNNNNRTG	1 cut(s)	747
SaqAI	TTAA	4 cut(s)	93, 492, 503, 1033
SatI	GCNGC	3 cut(s)	114, 753, 916
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	4 cut(s)	60, 328, 467, 854
ScaI	AGTACT	1 cut(s)	807
SchI	GAGTC	4 cut(s)	49, 59, 266, 391
ScrFI	CCNGG	3 cut(s)	170, 465, 816
SexAI	ACCWGGT	1 cut(s)	814
SfaNI	GCATC	5 cut(s)	360, 523, 534, 724, 999
Sfr274I	CTCGAG	1 cut(s)	55
SinI	GGWCC	2 cut(s)	328, 854
SlaI	CTCGAG	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	747
SmlI	CTYRAG	2 cut(s)	55, 71
SmoI	CTYRAG	2 cut(s)	55, 71
SphI	GCATGC	1 cut(s)	746
Sse9I	AATT	3 cut(s)	94, 795, 941
SsiI	CCGC	3 cut(s)	113, 345, 456
SspMI	CTAG	4 cut(s)	537, 561, 705, 971
StyD4I	CCNGG	3 cut(s)	168, 463, 814
TaaI	ACNGT	2 cut(s)	337, 764
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	4 cut(s)	56, 127, 150, 368
TasI	AATT	3 cut(s)	94, 795, 941
TatI	WGTACW	2 cut(s)	805, 956
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	2 cut(s)	365, 994
Tru1I	TTAA	4 cut(s)	93, 492, 503, 1033
Tru9I	TTAA	4 cut(s)	93, 492, 503, 1033
TscAI	CASTG	4 cut(s)	145, 342, 638, 767
TseI	GCWGC	2 cut(s)	752, 915
TspDTI	ATGAA	1 cut(s)	234
TspGWI	ACGGA	1 cut(s)	390
TspRI	CASTG	4 cut(s)	145, 342, 638, 767
VpaK11BI	GGWCC	2 cut(s)	328, 854
XbaI	TCTAGA	1 cut(s)	560
XceI	RCATGY	2 cut(s)	746, 966
XhoI	CTCGAG	1 cut(s)	55
XspI	CTAG	4 cut(s)	537, 561, 705, 971
ZrmI	AGTACT	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.