Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0007867

Physical Location & Seq

Genomic Coordinates Reverse (-)

33066673 .. 33067216

Gene Structure 544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1202100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCCCGTTACCACAGAAATATTTAGGACTCCATTGGTATCGTACCTCTATGAGAGGGGCTGGCGTCAAAGCTTTACTGTATGGGGTGGATTTCCTGGCCCAGAGAAAGAGTTTGAGTTGATTAAGGATTTCTTAAAGCCAGTCTTGGGTGGTGGAAATATCATTGATGCAAGTTGTGGGAGTGGGATGTTTTCTAGACTTTTCGCTAAGAGTGGATTGTTTTCTCTTGTTGTTGCTTTGGACTACTCGGAGAACATGTTGAAGGAGTGTTATGGATTCATTCAGCAGGAGGAGAACTTCCCCAAAGAGAACATGATCCTGGTCAGAGCTGATATTTCTCGGCTTCCGTTTGCTACTGGTTCTGTGGATGCAGTGCATGCTGGTGCTGCCATACATTGTTGGCCTTCACCATCAACAGCTGTTGCTGAAATTAGTCGAGTCCTGCGACCTGGGGGGGTAGAACAAAGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

158

Amino Acids

17.31

Weight (kDa)

5.71

Isoelectric Point (pI)

55.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	41 - 153	1e-06	Methyltransferase domain
Ubie_methyltran	PF01209	48 - 153	8.4e-10	ubiE/COQ5 methyltransferase family
Methyltransf_31	PF13847	51 - 153	1.1e-11	Methyltransferase domain
Methyltransf_25	PF13649	54 - 152	2.3e-17	Methyltransferase domain
Methyltransf_11	PF08241	56 - 153	6e-21	Methyltransferase domain
Methyltransf_12	PF08242	56 - 153	5.9e-11	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78140
fragaria_vesca	FvH4_5g37670 FvH4_5g37670 FvH4_5g37670 FvH4_5g37670 FvH4_5g37670
malus_domestica	MD05G1202100.v1.1 MD08G1181500.v1.1 MD08G1181700.v1.1 MD15G1366900.v1.1
prunus_persica	Prupe.1G514900_v2.0.a1
pyrus_communis	pycom08g15490
rosa_chinensis	RchiOBHm_Chr7g0239331
rosa_laevigata	RLG00000000762
rosa_multiflora	Rmu_sc0007840.1_g000001 Rmu_sc0008456.1_g000004
rosa_roxburghii	Rroxscaffold_3G00221000
rosa_rugosa	Rorug07G0327500 Rorug07G0327500
rosa_samantha	Rh7AG480800 Rh7BG453600 Rh7CG498700 Rh7DG466800
rosa_wichuraiana	Rw7G040290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	310
AcyI	GRCGYC	1 cut(s)	64
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	146
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	1 cut(s)	262
AjnI	CCWGG	3 cut(s)	94, 318, 448
AluBI	AGCT	3 cut(s)	72, 329, 419
AluI	AGCT	3 cut(s)	72, 329, 419
AlwI	GGATC	1 cut(s)	310
AoxI	GGCC	2 cut(s)	97, 401
ApeKI	GCWGC	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	399
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	1 cut(s)	418
BciT130I	CCWGG	3 cut(s)	96, 320, 450
BfaI	CTAG	1 cut(s)	195
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
Bme1390I	CCNGG	3 cut(s)	96, 320, 450
BmgT120I	GGNCC	1 cut(s)	98
BmrFI	CCNGG	3 cut(s)	96, 320, 450
BmsI	GCATC	2 cut(s)	157, 358
BsaHI	GRCGYC	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	449
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	2 cut(s)	140, 361
BseBI	CCWGG	3 cut(s)	96, 320, 450
BseDI	CCNNGG	1 cut(s)	449
BseGI	GGATG	2 cut(s)	192, 373
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseNI	ACTGG	2 cut(s)	140, 361
BseRI	GAGGAG	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	373
BshFI	GGCC	2 cut(s)	99, 403
BslI	CCNNNNNNNGG	1 cut(s)	146
BsnI	GGCC	2 cut(s)	99, 403
Bsp143I	GATC	1 cut(s)	315
BspANI	GGCC	2 cut(s)	99, 403
BspPI	GGATC	1 cut(s)	310
BsrI	ACTGG	2 cut(s)	140, 361
BssECI	CCNNGG	1 cut(s)	449
BssMI	GATC	1 cut(s)	315
BssNI	GRCGYC	1 cut(s)	64
Bst2UI	CCWGG	3 cut(s)	96, 320, 450
Bst4CI	ACNGT	1 cut(s)	79
BstACI	GRCGYC	1 cut(s)	64
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	62, 378
BstDEI	CTNAG	1 cut(s)	207
BstF5I	GGATG	2 cut(s)	192, 373
BstKTI	GATC	1 cut(s)	318
BstMBI	GATC	1 cut(s)	315
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 386
BstNI	CCWGG	3 cut(s)	96, 320, 450
BstNSI	RCATGY	2 cut(s)	259, 380
BstSCI	CCNGG	3 cut(s)	94, 318, 448
BstV1I	GCAGC	1 cut(s)	373
BsuRI	GGCC	2 cut(s)	99, 403
BtsCI	GGATG	2 cut(s)	192, 373
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	2 cut(s)	62, 378
Cfr13I	GGNCC	1 cut(s)	98
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	3 cut(s)	256, 313, 377
CviJI	RGCY	8 cut(s)	60, 72, 99, 139, 329, 343, 403, 419
CviKI_1	RGCY	8 cut(s)	60, 72, 99, 139, 329, 343, 403, 419
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
EcoRII	CCWGG	3 cut(s)	94, 318, 448
FaeI	CATG	3 cut(s)	259, 316, 380
FaiI	YATR	7 cut(s)	51, 82, 257, 273, 314, 378, 392
FalI	AAGNNNNNCTT	4 cut(s)	116, 148, 128, 160
FatI	CATG	3 cut(s)	255, 312, 376
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	2 cut(s)	199, 380
Fsp4HI	GCNGC	1 cut(s)	387
FspBI	CTAG	1 cut(s)	195
GluI	GCNGC	1 cut(s)	387
HaeIII	GGCC	2 cut(s)	99, 403
HgaI	GACGC	1 cut(s)	53
Hin1I	GRCGYC	1 cut(s)	64
Hin1II	CATG	3 cut(s)	259, 316, 380
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	3 cut(s)	28, 276, 438
HphI	GGTGA	1 cut(s)	399
Hpy188I	TCNGA	2 cut(s)	250, 326
Hpy188III	TCNNGA	1 cut(s)	195
HpyAV	CCTTC	2 cut(s)	256, 414
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4V	TGCA	3 cut(s)	170, 371, 376
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 386
HpyF3I	CTNAG	1 cut(s)	207
Hsp92I	GRCGYC	1 cut(s)	64
Hsp92II	CATG	3 cut(s)	259, 316, 380
Kzo9I	GATC	1 cut(s)	315
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	2 cut(s)	157, 358
MaeI	CTAG	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	1 cut(s)	317
MboI	GATC	1 cut(s)	315
MluCI	AATT	1 cut(s)	429
MlyI	GAGTC	2 cut(s)	22, 447
MnlI	CCTC	3 cut(s)	48, 56, 283
MseI	TTAA	2 cut(s)	123, 134
MslI	CAYNNNNRTG	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	419
MspR9I	CCNGG	3 cut(s)	96, 320, 450
MvaI	CCWGG	3 cut(s)	96, 320, 450
MwoI	GCNNNNNNNGC	2 cut(s)	377, 386
NdeII	GATC	1 cut(s)	315
NlaIII	CATG	3 cut(s)	259, 316, 380
NmeAIII	GCCGAG	1 cut(s)	319
NspI	RCATGY	2 cut(s)	259, 380
PaeI	GCATGC	1 cut(s)	380
PciI	ACATGT	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	442
PfeI	GAWTC	1 cut(s)	276
PkrI	GCNGC	1 cut(s)	388
PleI	GAGTC	2 cut(s)	22, 446
PpsI	GAGTC	2 cut(s)	22, 446
PscI	ACATGT	1 cut(s)	255
Psp6I	CCWGG	3 cut(s)	94, 318, 448
PspGI	CCWGG	3 cut(s)	94, 318, 448
PspPI	GGNCC	1 cut(s)	98
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	123, 134
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	1 cut(s)	315
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	2 cut(s)	22, 447
ScrFI	CCNGG	3 cut(s)	96, 320, 450
SetI	ASST	5 cut(s)	48, 74, 331, 421, 451
SfaNI	GCATC	2 cut(s)	157, 358
SmiMI	CAYNNNNRTG	1 cut(s)	381
SphI	GCATGC	1 cut(s)	380
Sse9I	AATT	1 cut(s)	429
SspI	AATATT	1 cut(s)	21
SspMI	CTAG	1 cut(s)	195
StyD4I	CCNGG	3 cut(s)	94, 318, 448
TaaI	ACNGT	1 cut(s)	79
TaqI	TCGA	1 cut(s)	436
TasI	AATT	1 cut(s)	429
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	2 cut(s)	123, 134
Tru9I	TTAA	2 cut(s)	123, 134
TscAI	CASTG	1 cut(s)	378
TseI	GCWGC	1 cut(s)	386
TspDTI	ATGAA	1 cut(s)	268
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	1 cut(s)	378
XbaI	TCTAGA	1 cut(s)	194
XceI	RCATGY	2 cut(s)	259, 380
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.