Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007867

Physical Location & Seq

Genomic Coordinates Reverse (-)

42362731 .. 42365906

Gene Structure 3176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G514900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCGACGGTGATTGGCAACCTCACCCCCGCGTTTCTTCCGAGTCGACTCGGTAACTCGAGGCCATGTGTTGTTAAGCTCCGGTCTTGCACTGCACCGGTTTTCAGACGCTCTTTCGCCGCAATTACTGCTCGTGCTGCTTCCACCGCCTTCATTGAAGTCGAGCCAAGGGATACAAATCCAATTGTGGTTCAAAATGAGGTCACCACCAGCAGCAATAACATTTTAGCTTGTCCTATATGCTTCGACCAATTTTCAAGTTCCGCTGATCCGGGCTTATCTGTCAACTCTGCTTCCGGGTCTAGTTTTCAATGTAGCACTTGTAAGAAGACTTACTTTGGCAATCAAACACATATTGACCTGACAACAGCCAGTGGCTCCAAGAACTATGGTGAATCAATGCCGGTTTCCACAGAGCTTTTCAGGACTCCATTGGTATCATTCCTCTATGAGAGGGGCTGGCGTCAAAGCTTTTCTGTCTGGGGTGGTTTTCCTGGCCCAGAGAAAGAGTTTGAGTTGACTAAGGATTTCTTAAAGCCGGTCTTGGGTGGAAATATCATTGATGCAAGTTGTGGGAGTGGGCTATTTTCTAGACTTTTTGCAAAGAGTGGATTATTTTCTCTTGTTGTTGCTTTGGACTACTCGGAGAACATGTTGAAACAGACCTATGAATTCATTAAGAAGGAGGAGAATTTCCCCGAAGAGAACATAATTTTGGTCAGAGCTGATATTTCTAGGCTTCCCTTTGCTACAAGTTCTGTTGATGCTGTGCATGCTGGTGCTGCCCTACACTGTTGGCCTTCACCATCAACAGCTGTTGCTGAAATCAGTCGAGTTCTGCGACCCGGTGGTGTGTTTGTTGCAACTACTTACATACTTGATGGGCCTTTATCTTATATCCCATTTTTGAGGAATATAACTCAGAGAACAAAGCAAATATCAGGCAGCCAAATCTTCACATCTGAACGTGAATTAGAAGATCTCTGCAAAGCATGTGGGCTAGTTGGTTATACCTGCGTGAGGAATGGGCTCTTTGTGATGATTTCTGCTACAAAACCCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010287 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

355

Amino Acids

38.49

Weight (kDa)

8.26

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007867)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78140
fragaria_vesca	FvH4_5g37670 FvH4_5g37670 FvH4_5g37670 FvH4_5g37670 FvH4_5g37670
malus_domestica	MD05G1202100.v1.1 MD08G1181500.v1.1 MD08G1181700.v1.1 MD15G1366900.v1.1
prunus_persica	Prupe.1G514900_v2.0.a1
pyrus_communis	pycom08g15490
rosa_chinensis	RchiOBHm_Chr7g0239331
rosa_laevigata	RLG00000000762
rosa_multiflora	Rmu_sc0007840.1_g000001 Rmu_sc0008456.1_g000004
rosa_roxburghii	Rroxscaffold_3G00221000
rosa_rugosa	Rorug07G0327500 Rorug07G0327500
rosa_samantha	Rh7AG480800 Rh7BG453600 Rh7CG498700 Rh7DG466800
rosa_wichuraiana	Rw7G040290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1022
AccI	GTMKAC	1 cut(s)	46
AccII	CGCG	1 cut(s)	32
AciI	CCGC	4 cut(s)	30, 120, 147, 264
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	2 cut(s)	671, 691
AcyI	GRCGYC	1 cut(s)	463
AfiI	CCNNNNNNNGG	2 cut(s)	545, 1020
AflIII	ACRYGT	1 cut(s)	651
AgeI	ACCGGT	1 cut(s)	97
AgsI	TTSAA	5 cut(s)	158, 194, 258, 311, 658
AjnI	CCWGG	1 cut(s)	493
AjuI	GAANNNNNNNTTGG	2 cut(s)	698, 730
AluBI	AGCT	6 cut(s)	79, 230, 418, 471, 725, 815
AluI	AGCT	6 cut(s)	79, 230, 418, 471, 725, 815
AlwI	GGATC	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	58
AoxI	GGCC	4 cut(s)	62, 496, 797, 884
ApeKI	GCWGC	4 cut(s)	137, 213, 782, 945
ApoI	RAATTY	2 cut(s)	671, 691
AsiGI	ACCGGT	1 cut(s)	97
AspS9I	GGNCC	2 cut(s)	497, 884
AsuC2I	CCSGG	3 cut(s)	273, 298, 846
AsuHPI	GGTGA	5 cut(s)	16, 22, 196, 404, 795
AvaI	CYCGRG	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	1032
BauI	CACGAG	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	335
BbvI	GCAGC	4 cut(s)	124, 225, 769, 957
BccI	CCATC	2 cut(s)	814, 875
BciT130I	CCWGG	1 cut(s)	495
BciVI	GTATCC	1 cut(s)	166
BcnI	CCSGG	3 cut(s)	273, 298, 846
BfaI	CTAG	4 cut(s)	303, 591, 735, 1001
BfuAI	ACCTGC	1 cut(s)	1022
BfuI	GTATCC	1 cut(s)	166
BglII	AGATCT	1 cut(s)	979
BisI	GCNGC	5 cut(s)	120, 138, 214, 783, 946
BlsI	GCNGC	5 cut(s)	121, 139, 215, 784, 947
Bme1390I	CCNGG	4 cut(s)	273, 298, 495, 846
BmeT110I	CYCGRG	1 cut(s)	58
BmgT120I	GGNCC	2 cut(s)	497, 884
BmiI	GGNNCC	1 cut(s)	379
BmrFI	CCNGG	4 cut(s)	273, 298, 495, 846
BmrI	ACTGGG	1 cut(s)	1053
BmsI	GCATC	2 cut(s)	553, 754
BmuI	ACTGGG	1 cut(s)	1053
BpiI	GAAGAC	1 cut(s)	335
BpuMI	CCSGG	3 cut(s)	273, 298, 846
BsaBI	GATNNNNATC	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	463
BsaJI	CCNNGG	1 cut(s)	167
BsaWI	WCCGGW	2 cut(s)	81, 97
BsaXI	ACNNNNNCTCC	2 cut(s)	638, 668
Bsc4I	CCNNNNNNNGG	2 cut(s)	545, 1020
Bse118I	RCCGGY	3 cut(s)	97, 403, 538
Bse1I	ACTGG	2 cut(s)	372, 1059
Bse8I	GATNNNNATC	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	495
BseDI	CCNNGG	1 cut(s)	167
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	545, 1020
BseMII	CTCAG	1 cut(s)	935
BseNI	ACTGG	2 cut(s)	372, 1059
BseRI	GAGGAG	1 cut(s)	701
BseXI	GCAGC	4 cut(s)	124, 225, 769, 957
BsgI	GTGCAG	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	4 cut(s)	64, 498, 799, 886
BshTI	ACCGGT	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	58
BsiSI	CCGG	7 cut(s)	82, 98, 272, 297, 404, 539, 846
BslI	CCNNNNNNNGG	2 cut(s)	545, 1020
BsnI	GGCC	4 cut(s)	64, 498, 799, 886
BsoBI	CYCGRG	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	1032
Bsp143I	GATC	2 cut(s)	268, 979
BspACI	CCGC	4 cut(s)	30, 120, 147, 264
BspANI	GGCC	4 cut(s)	64, 498, 799, 886
BspCNI	CTCAG	1 cut(s)	934
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	379
BspMI	ACCTGC	1 cut(s)	1022
BspPI	GGATC	1 cut(s)	263
BsrFI	RCCGGY	3 cut(s)	97, 403, 538
BsrI	ACTGG	2 cut(s)	372, 1059
BssAI	RCCGGY	3 cut(s)	97, 403, 538
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	2 cut(s)	268, 979
BssNI	GRCGYC	1 cut(s)	463
BssSI	CACGAG	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	167
Bst2BI	CACGAG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	495
Bst4CI	ACNGT	2 cut(s)	10, 794
Bst6I	CTCTTC	1 cut(s)	696
BstACI	GRCGYC	1 cut(s)	463
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstC8I	GCNNGC	2 cut(s)	461, 774
BstDEI	CTNAG	2 cut(s)	522, 921
BstEII	GGTNACC	1 cut(s)	202
BstENI	CCTNNNNNAGG	1 cut(s)	1018
BstFNI	CGCG	1 cut(s)	32
BstKTI	GATC	2 cut(s)	271, 982
BstMBI	GATC	2 cut(s)	268, 979
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 137, 146, 773, 782
BstNI	CCWGG	1 cut(s)	495
BstNSI	RCATGY	3 cut(s)	655, 776, 996
BstPI	GGTNACC	1 cut(s)	202
BstSCI	CCNGG	4 cut(s)	271, 296, 493, 844
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	4 cut(s)	124, 225, 769, 957
BstV2I	GAAGAC	1 cut(s)	335
BstX2I	RGATCY	1 cut(s)	979
BstYI	RGATCY	1 cut(s)	979
BsuI	GTATCC	1 cut(s)	166
BsuRI	GGCC	4 cut(s)	64, 498, 799, 886
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	3 cut(s)	90, 379, 790
BveI	ACCTGC	1 cut(s)	1022
Cac8I	GCNNGC	2 cut(s)	461, 774
Cfr10I	RCCGGY	3 cut(s)	97, 403, 538
Cfr13I	GGNCC	2 cut(s)	497, 884
CseI	GACGC	2 cut(s)	117, 452
CspAI	ACCGGT	1 cut(s)	97
CspCI	CAANNNNNGTGG	2 cut(s)	976, 1011
CviAII	CATG	4 cut(s)	66, 652, 773, 993
DdeI	CTNAG	2 cut(s)	522, 921
DpnI	GATC	2 cut(s)	270, 981
DpnII	GATC	2 cut(s)	268, 979
Eam1104I	CTCTTC	1 cut(s)	696
EarI	CTCTTC	1 cut(s)	696
Eco130I	CCWWGG	1 cut(s)	167
Eco24I	GRGCYC	1 cut(s)	1032
Eco88I	CYCGRG	1 cut(s)	58
Eco91I	GGTNACC	1 cut(s)	202
EcoNI	CCTNNNNNAGG	1 cut(s)	1018
EcoO65I	GGTNACC	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	671
EcoRII	CCWGG	1 cut(s)	493
EcoT14I	CCWWGG	1 cut(s)	167
EcoT38I	GRGCYC	1 cut(s)	1032
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	4 cut(s)	69, 655, 776, 996
FalI	AAGNNNNNCTT	6 cut(s)	320, 352, 515, 547, 527, 559
FatI	CATG	4 cut(s)	65, 651, 772, 992
FauI	CCCGC	1 cut(s)	37
FblI	GTMKAC	1 cut(s)	46
Fnu4HI	GCNGC	5 cut(s)	120, 138, 214, 783, 946
FriOI	GRGCYC	1 cut(s)	1032
Fsp4HI	GCNGC	5 cut(s)	120, 138, 214, 783, 946
FspBI	CTAG	4 cut(s)	303, 591, 735, 1001
GluI	GCNGC	5 cut(s)	120, 138, 214, 783, 946
HaeIII	GGCC	4 cut(s)	64, 498, 799, 886
HapII	CCGG	7 cut(s)	82, 98, 272, 297, 404, 539, 846
HgaI	GACGC	2 cut(s)	117, 452
Hin1I	GRCGYC	1 cut(s)	463
Hin1II	CATG	4 cut(s)	69, 655, 776, 996
HincII	GTYRAC	3 cut(s)	47, 286, 519
HindII	GTYRAC	3 cut(s)	47, 286, 519
HindIII	AAGCTT	1 cut(s)	469
HinfI	GANTC	4 cut(s)	43, 48, 395, 427
HpaII	CCGG	7 cut(s)	82, 98, 272, 297, 404, 539, 846
HphI	GGTGA	5 cut(s)	16, 22, 196, 404, 795
Hpy166II	GTNNAC	3 cut(s)	47, 286, 519
Hpy188I	TCNGA	6 cut(s)	42, 107, 646, 722, 924, 964
Hpy188III	TCNNGA	2 cut(s)	424, 591
Hpy8I	GTNNAC	3 cut(s)	47, 286, 519
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	160, 676, 810
HpyCH4III	ACNGT	2 cut(s)	10, 794
HpyCH4IV	ACGT	1 cut(s)	967
HpyCH4V	TGCA	7 cut(s)	90, 95, 566, 602, 772, 863, 987
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 137, 146, 773, 782
HpyF3I	CTNAG	2 cut(s)	522, 921
HpySE526I	ACGT	1 cut(s)	967
Hsp92I	GRCGYC	1 cut(s)	463
Hsp92II	CATG	4 cut(s)	69, 655, 776, 996
Kzo9I	GATC	2 cut(s)	268, 979
LmnI	GCTCC	2 cut(s)	84, 383
Lsp1109I	GCAGC	4 cut(s)	124, 225, 769, 957
LweI	GCATC	2 cut(s)	553, 754
MaeI	CTAG	4 cut(s)	303, 591, 735, 1001
MaeII	ACGT	1 cut(s)	967
MaeIII	GTNAC	2 cut(s)	53, 202
MalI	GATC	2 cut(s)	270, 981
MboI	GATC	2 cut(s)	268, 979
MboII	GAAGA	5 cut(s)	29, 340, 713, 946, 989
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	1 cut(s)	979
MhlI	GDGCHC	1 cut(s)	1032
MluCI	AATT	7 cut(s)	123, 183, 251, 671, 691, 711, 971
MlyI	GAGTC	3 cut(s)	42, 52, 421
MnlI	CCTC	8 cut(s)	32, 54, 193, 447, 455, 679, 903, 1014
MseI	TTAA	4 cut(s)	75, 533, 678, 1063
MslI	CAYNNNNRTG	1 cut(s)	777
MspA1I	CMGCKG	2 cut(s)	266, 815
MspI	CCGG	7 cut(s)	82, 98, 272, 297, 404, 539, 846
MspR9I	CCNGG	4 cut(s)	273, 298, 495, 846
MunI	CAATTG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	495
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	5 cut(s)	128, 137, 146, 773, 782
NciI	CCSGG	3 cut(s)	273, 298, 846
NdeII	GATC	2 cut(s)	268, 979
NlaIII	CATG	4 cut(s)	69, 655, 776, 996
NlaIV	GGNNCC	1 cut(s)	379
NmuCI	GTSAC	1 cut(s)	202
NspI	RCATGY	3 cut(s)	655, 776, 996
PaeI	GCATGC	1 cut(s)	776
PaeR7I	CTCGAG	1 cut(s)	58
PciI	ACATGT	1 cut(s)	651
PcsI	WCGNNNNNNNCGW	1 cut(s)	838
PfeI	GAWTC	1 cut(s)	395
PinAI	ACCGGT	1 cut(s)	97
PkrI	GCNGC	5 cut(s)	121, 139, 215, 784, 947
PleI	GAGTC	3 cut(s)	42, 51, 421
PpsI	GAGTC	3 cut(s)	42, 51, 421
PscI	ACATGT	1 cut(s)	651
Psp6I	CCWGG	1 cut(s)	493
PspEI	GGTNACC	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	493
PspN4I	GGNNCC	1 cut(s)	379
PspPI	GGNCC	2 cut(s)	497, 884
PspXI	VCTCGAGB	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	979
PvuII	CAGCTG	1 cut(s)	815
RseI	CAYNNNNRTG	1 cut(s)	777
SalI	GTCGAC	1 cut(s)	45
SaqAI	TTAA	4 cut(s)	75, 533, 678, 1063
SatI	GCNGC	5 cut(s)	120, 138, 214, 783, 946
Sau3AI	GATC	2 cut(s)	268, 979
Sau96I	GGNCC	2 cut(s)	497, 884
SchI	GAGTC	3 cut(s)	42, 52, 421
ScrFI	CCNGG	4 cut(s)	273, 298, 495, 846
SduI	GDGCHC	1 cut(s)	1032
SfaNI	GCATC	2 cut(s)	553, 754
Sfr274I	CTCGAG	1 cut(s)	58
SlaI	CTCGAG	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	777
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
SphI	GCATGC	1 cut(s)	776
Sse9I	AATT	7 cut(s)	123, 183, 251, 671, 691, 711, 971
SsiI	CCGC	4 cut(s)	30, 120, 147, 264
SspMI	CTAG	4 cut(s)	303, 591, 735, 1001
StyD4I	CCNGG	4 cut(s)	271, 296, 493, 844
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	2 cut(s)	10, 794
TaiI	ACGT	1 cut(s)	970
TaqI	TCGA	5 cut(s)	46, 59, 162, 246, 832
TasI	AATT	7 cut(s)	123, 183, 251, 671, 691, 711, 971
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	395
Tru1I	TTAA	4 cut(s)	75, 533, 678, 1063
Tru9I	TTAA	4 cut(s)	75, 533, 678, 1063
TscAI	CASTG	3 cut(s)	97, 379, 797
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	4 cut(s)	137, 213, 782, 945
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	3 cut(s)	142, 664, 684
TspRI	CASTG	3 cut(s)	97, 379, 797
XagI	CCTNNNNNAGG	1 cut(s)	1018
XapI	RAATTY	2 cut(s)	671, 691
XbaI	TCTAGA	1 cut(s)	590
XceI	RCATGY	3 cut(s)	655, 776, 996
XhoI	CTCGAG	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	46
XspI	CTAG	4 cut(s)	303, 591, 735, 1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.