AT1G78172

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006218
Physical Location & Seq
Forward (+)
29415477 .. 29416592
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78172.1

Sequence Viewer

Length: 288 bp
ATGGCGAGCAAAGACGAATTTTCCCGAGATCTCACTGCGATTCGCTGCGCCAGAGCTACGATGCTTCTCTATTCACTTGCATCATCTCGCACAATCGATTCCGCCGGCGAGAAGCAGGAGAAAGGAGAAACGCGAAGAGAGATAGAGGATCTGAGGAGAAAGCTTACCATGGTGAAGATAAAGATGAATCGGATTAAGCTTTGCGGATTGATGGAACTGCTTCTTCTCGTCTTTTTGGTACTGTTGCTTTCCACTTTCTTCCTTGTCTTCTTCCTTGGATCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.89

Weight (kDa)

9.62

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 133
AciI CCGC 2 cut(s) 102, 204
AclWI GGATC 2 cut(s) 156, 286
AcsI RAATTY 1 cut(s) 17
AfaI GTAC 1 cut(s) 240
AluBI AGCT 3 cut(s) 56, 163, 199
AluI AGCT 3 cut(s) 56, 163, 199
AlwI GGATC 2 cut(s) 156, 286
Ama87I CYCGRG 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 45
ApoI RAATTY 1 cut(s) 17
Asp700I GAANNNNTTC 1 cut(s) 219
AspLEI GCGC 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 184
AvaI CYCGRG 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 259
BbvI GCAGC 1 cut(s) 32
BccI CCATC 1 cut(s) 205
BglII AGATCT 1 cut(s) 28
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
BmeT110I CYCGRG 1 cut(s) 24
BmsI GCATC 2 cut(s) 51, 89
BpiI GAAGAC 1 cut(s) 259
Bsa29I ATCGAT 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 168, 274
Bse118I RCCGGY 1 cut(s) 104
BseCI ATCGAT 1 cut(s) 96
BseDI CCNNGG 2 cut(s) 168, 274
BseMII CTCAG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 32
Bsh1236I CGCG 1 cut(s) 133
BshVI ATCGAT 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 1 cut(s) 105
BsoBI CYCGRG 1 cut(s) 24
Bsp143I GATC 3 cut(s) 28, 148, 278
Bsp19I CCATGG 1 cut(s) 168
BspACI CCGC 2 cut(s) 102, 204
BspCNI CTCAG 1 cut(s) 144
BspDI ATCGAT 1 cut(s) 96
BspFNI CGCG 1 cut(s) 133
BspPI GGATC 2 cut(s) 156, 286
BsrFI RCCGGY 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 168, 274
BssMI GATC 3 cut(s) 28, 148, 278
BssT1I CCWWGG 2 cut(s) 168, 274
Bst4CI ACNGT 1 cut(s) 243
Bst6I CTCTTC 1 cut(s) 130
BstC8I GCNNGC 2 cut(s) 7, 106
BstDEI CTNAG 1 cut(s) 152
BstDSI CCRYGG 1 cut(s) 168
BstFNI CGCG 1 cut(s) 133
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 3 cut(s) 31, 151, 281
BstMBI GATC 3 cut(s) 28, 148, 278
BstUI CGCG 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 32
BstV2I GAAGAC 1 cut(s) 259
BstX2I RGATCY 3 cut(s) 28, 148, 278
BstYI RGATCY 3 cut(s) 28, 148, 278
Bsu15I ATCGAT 1 cut(s) 96
BsuTUI ATCGAT 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 168
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 2 cut(s) 7, 106
CfoI GCGC 1 cut(s) 50
Cfr10I RCCGGY 1 cut(s) 104
ClaI ATCGAT 1 cut(s) 96
Csp6I GTAC 1 cut(s) 239
CviAII CATG 1 cut(s) 169
CviJI RGCY 3 cut(s) 56, 163, 199
CviKI_1 RGCY 3 cut(s) 56, 163, 199
CviQI GTAC 1 cut(s) 239
DdeI CTNAG 1 cut(s) 152
DpnI GATC 3 cut(s) 30, 150, 280
DpnII GATC 3 cut(s) 28, 148, 278
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
EciI GGCGGA 1 cut(s) 91
Eco130I CCWWGG 2 cut(s) 168, 274
Eco88I CYCGRG 1 cut(s) 24
EcoT14I CCWWGG 2 cut(s) 168, 274
ErhI CCWWGG 2 cut(s) 168, 274
FaeI CATG 1 cut(s) 172
FaiI YATR 1 cut(s) 170
FatI CATG 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 46
Fsp4HI GCNGC 1 cut(s) 46
GlaI GCGC 1 cut(s) 49
GluI GCNGC 1 cut(s) 46
HapII CCGG 1 cut(s) 105
HhaI GCGC 1 cut(s) 50
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HindIII AAGCTT 2 cut(s) 161, 197
HinfI GANTC 3 cut(s) 40, 98, 187
HpaII CCGG 1 cut(s) 105
HphI GGTGA 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 153, 192
Hpy188III TCNNGA 1 cut(s) 24
HpyCH4III ACNGT 1 cut(s) 243
HpyCH4V TGCA 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 152
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 1 cut(s) 48
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 3 cut(s) 28, 148, 278
LpnPI CCDG 3 cut(s) 64, 101, 118
Lsp1109I GCAGC 1 cut(s) 32
LweI GCATC 2 cut(s) 51, 89
MalI GATC 3 cut(s) 30, 150, 280
MboI GATC 3 cut(s) 28, 148, 278
MboII GAAGA 6 cut(s) 147, 187, 215, 250, 259, 262
MflI RGATCY 3 cut(s) 28, 148, 278
MluCI AATT 1 cut(s) 17
MnlI CCTC 2 cut(s) 139, 147
MreI CGCCGGCG 1 cut(s) 104
MroNI GCCGGC 1 cut(s) 104
MroXI GAANNNNTTC 1 cut(s) 219
MseI TTAA 1 cut(s) 195
MspI CCGG 1 cut(s) 105
MvnI CGCG 1 cut(s) 133
NaeI GCCGGC 1 cut(s) 106
NcoI CCATGG 1 cut(s) 168
NdeII GATC 3 cut(s) 28, 148, 278
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 1 cut(s) 172
PdiI GCCGGC 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 3 cut(s) 40, 98, 187
PkrI GCNGC 1 cut(s) 47
PsuI RGATCY 3 cut(s) 28, 148, 278
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 3 cut(s) 28, 148, 278
SetI ASST 3 cut(s) 58, 165, 201
SfaNI GCATC 2 cut(s) 51, 89
SgrAI CRCCGGYG 1 cut(s) 104
Sse9I AATT 1 cut(s) 17
SsiI CCGC 2 cut(s) 102, 204
StyI CCWWGG 2 cut(s) 168, 274
TaaI ACNGT 1 cut(s) 243
TaqI TCGA 1 cut(s) 96
TasI AATT 1 cut(s) 17
TfiI GAWTC 3 cut(s) 40, 98, 187
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 40
TseI GCWGC 1 cut(s) 45
TspDTI ATGAA 1 cut(s) 200
TspRI CASTG 1 cut(s) 40
XapI RAATTY 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.