Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000565.1

Orthogroup ID

OG0006218

Physical Location & Seq

Genomic Coordinates Reverse (-)

125914 .. 126475

Gene Structure 562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000565.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggcgctgattcgaggagcttgtgaacttgctggtacagtggagattccagtcgaagaacttggaatcctggtgttgcttgtgaagaagaagaagaagaagaagaagaagaagagagagagagagagagagagagagagagagagagagggagagagagaaatggatgccgaaaccctaaccttagccatgccgaagctctgcaatcggaaccgtaatttgctcgatcaaagtcacttttcttctctctcggctcaaactgtcgtccgccattcgctcgaccaccgcgacgctgccacggagaaggagaaggtgctaaggagagagatcggagatctaaaaacggaggttgtgagggagtatctgaggagcaagaggatcaggctctgtggattgatggagctctttctttatgttgtgatgctcttcattctttgctgtttcttgttcactatcaataaatgggtggtttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

18.56

Weight (kDa)

9.58

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78172
fragaria_vesca	FvH4_5g37350
malus_domestica	MD08G1182600.v1.1 MD15G1368300.v1.1
prunus_persica	Prupe.1G516500_v2.0.a1
pyrus_communis	pycom15g33020
rosa_chinensis	RchiOBHm_Chr7g0239021
rosa_laevigata	RLG00000000790 RLG00000012650 RLG00000033412
rosa_multiflora	Rmu_sc0000455.1_g000036 Rmu_sc0000565.1_g000035 Rmu_sc0004277.1_g000032 Rmu_sc0005651.1_g000004
rosa_roxburghii	Rroxscaffold_1G00042860 Rroxscaffold_3G00220070 Rroxscaffold_3G00221360
rosa_rugosa	Rorug07G0324700 Rorug07G0324700
rosa_samantha	Rh7AG393400 Rh7AG479500 Rh7CG412600 Rh7CG497000 Rh7DG464500
rosa_wichuraiana	Rw5G047320 Rw7G040090 Rw7G041080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	288
AciI	CCGC	2 cut(s)	268, 286
AclWI	GGATC	1 cut(s)	386
AfaI	GTAC	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	69
AloI	GAACNNNNNNTCC	2 cut(s)	51, 83
AluBI	AGCT	3 cut(s)	20, 199, 403
AluI	AGCT	3 cut(s)	20, 199, 403
Alw21I	GWGCWC	1 cut(s)	405
AlwI	GGATC	1 cut(s)	386
AlwNI	CAGNNNCTG	1 cut(s)	387
ApeKI	GCWGC	1 cut(s)	293
AspLEI	GCGC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	1 cut(s)	391
BciT130I	CCWGG	1 cut(s)	71
BfoI	RGCGCY	1 cut(s)	8
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	2 cut(s)	157, 411
Bpu10I	CCTNAGC	2 cut(s)	184, 317
BsaJI	CCNNGG	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	356
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	2 cut(s)	30, 382
BseXI	GCAGC	1 cut(s)	280
Bsh1236I	CGCG	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	4 cut(s)	226, 327, 334, 378
BspACI	CCGC	2 cut(s)	268, 286
BspCNI	CTCAG	1 cut(s)	357
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	386
BspQI	GCTCTTC	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	4 cut(s)	226, 327, 334, 378
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	3 cut(s)	40, 215, 262
Bst6I	CTCTTC	2 cut(s)	107, 431
BstDEI	CTNAG	3 cut(s)	184, 317, 365
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	172
BstFNI	CGCG	1 cut(s)	288
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	4 cut(s)	229, 330, 337, 381
BstMBI	GATC	4 cut(s)	226, 327, 334, 378
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	69
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	45
CaiI	CAGNNNCTG	1 cut(s)	387
CfoI	GCGC	1 cut(s)	7
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	6 cut(s)	20, 188, 199, 254, 385, 403
CviKI_1	RGCY	6 cut(s)	20, 188, 199, 254, 385, 403
CviQI	GTAC	1 cut(s)	36
DdeI	CTNAG	3 cut(s)	184, 317, 365
DpnI	GATC	4 cut(s)	228, 329, 336, 380
DpnII	GATC	4 cut(s)	226, 327, 334, 378
Eam1104I	CTCTTC	2 cut(s)	107, 431
EarI	CTCTTC	2 cut(s)	107, 431
EciI	GGCGGA	1 cut(s)	257
Ecl136II	GAGCTC	1 cut(s)	403
Eco24I	GRGCYC	1 cut(s)	405
Eco53kI	GAGCTC	1 cut(s)	403
EcoICRI	GAGCTC	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	405
FaeI	CATG	1 cut(s)	193
FaiI	YATR	2 cut(s)	191, 414
FatI	CATG	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	1 cut(s)	294
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	8
HgaI	GACGC	1 cut(s)	299
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	3 cut(s)	10, 46, 66
Hpy166II	GTNNAC	2 cut(s)	26, 450
Hpy188I	TCNGA	3 cut(s)	210, 332, 366
Hpy188III	TCNNGA	1 cut(s)	474
Hpy8I	GTNNAC	2 cut(s)	26, 450
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	2 cut(s)	298, 304
HpyCH4III	ACNGT	3 cut(s)	40, 215, 262
HpyCH4V	TGCA	1 cut(s)	204
HpyF3I	CTNAG	3 cut(s)	184, 317, 365
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	4 cut(s)	226, 327, 334, 378
LguI	GCTCTTC	1 cut(s)	431
LmnI	GCTCC	3 cut(s)	17, 369, 400
LpnPI	CCDG	5 cut(s)	18, 56, 63, 83, 367
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	2 cut(s)	157, 411
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	4 cut(s)	228, 329, 336, 380
MboI	GATC	4 cut(s)	226, 327, 334, 378
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	405
MluCI	AATT	1 cut(s)	217
MnlI	CCTC	6 cut(s)	8, 142, 340, 348, 360, 369
MspR9I	CCNGG	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	288
NdeII	GATC	4 cut(s)	226, 327, 334, 378
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	1 cut(s)	212
NmeAIII	GCCGAG	1 cut(s)	230
NmuCI	GTSAC	1 cut(s)	233
PciSI	GCTCTTC	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfeI	GAWTC	3 cut(s)	10, 46, 66
PkrI	GCNGC	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	212
PstNI	CAGNNNCTG	1 cut(s)	387
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
SacI	GAGCTC	1 cut(s)	405
SapI	GCTCTTC	1 cut(s)	431
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	4 cut(s)	226, 327, 334, 378
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	405
SetI	ASST	6 cut(s)	22, 185, 201, 315, 351, 405
SfaNI	GCATC	2 cut(s)	157, 411
Sse9I	AATT	1 cut(s)	217
SsiI	CCGC	2 cut(s)	268, 286
SstI	GAGCTC	1 cut(s)	405
StyD4I	CCNGG	1 cut(s)	69
TaaI	ACNGT	3 cut(s)	40, 215, 262
TaqI	TCGA	4 cut(s)	13, 54, 225, 279
TasI	AATT	1 cut(s)	217
TfiI	GAWTC	3 cut(s)	10, 46, 66
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	418
TspGWI	ACGGA	2 cut(s)	314, 359
TspRI	CASTG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.