Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006218

Physical Location & Seq

Genomic Coordinates Reverse (-)

20915588 .. 20916050

Gene Structure 463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012650

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGAGACCGAAACCTTAACCCTAACCGAAGCTGAAGCTCTGCAATTGAGAAACGCAATTCGCTCGATCAAAGTTGCTCTTCTTCTCTCTTGGCTCAAACAGTCGCCCGCCAATCGCAGCCTCAACGACCAGCGCGACGCCGAGAAGGAGGAGACGCTGAGGAGAGAGATCAGAGATCTGAAAATGGAGGTTTTGAGGGAGCGTCTGAGGAACAAGAGGATCAGGCTGTGTGGATTGGTGGAGCTCTTTCTTGAGGTTGCCGTGCTCTTCGTTCTCTGCGGTTTCTTGTTCGAGTTCGCCGGCGGAGGAGATGGAGCTTCGTCGGAATTACCGATTACGTTATTGAAGAATTCAGATTTTACTATGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

14.11

Weight (kDa)

5.61

Isoelectric Point (pI)

60.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78172
fragaria_vesca	FvH4_5g37350
malus_domestica	MD08G1182600.v1.1 MD15G1368300.v1.1
prunus_persica	Prupe.1G516500_v2.0.a1
pyrus_communis	pycom15g33020
rosa_chinensis	RchiOBHm_Chr7g0239021
rosa_laevigata	RLG00000000790 RLG00000012650 RLG00000033412
rosa_multiflora	Rmu_sc0000455.1_g000036 Rmu_sc0000565.1_g000035 Rmu_sc0004277.1_g000032 Rmu_sc0005651.1_g000004
rosa_roxburghii	Rroxscaffold_1G00042860 Rroxscaffold_3G00220070 Rroxscaffold_3G00221360
rosa_rugosa	Rorug07G0324700 Rorug07G0324700
rosa_samantha	Rh7AG393400 Rh7AG479500 Rh7CG412600 Rh7CG497000 Rh7DG464500
rosa_wichuraiana	Rw5G047320 Rw7G040090 Rw7G041080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	135
AciI	CCGC	3 cut(s)	108, 279, 303
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	1 cut(s)	349
AcuI	CTGAAG	1 cut(s)	54
AcyI	GRCGYC	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	346
AluBI	AGCT	4 cut(s)	32, 38, 244, 317
AluI	AGCT	4 cut(s)	32, 38, 244, 317
Alw21I	GWGCWC	2 cut(s)	246, 267
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	227
ApeKI	GCWGC	1 cut(s)	117
ApoI	RAATTY	1 cut(s)	349
AspLEI	GCGC	1 cut(s)	135
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	2 cut(s)	246, 267
BbvCI	CCTCAGC	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	129
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	1 cut(s)	245
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BcoDI	GTCTC	1 cut(s)	146
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	272
BsaHI	GRCGYC	1 cut(s)	138
Bse118I	RCCGGY	1 cut(s)	299
BseMII	CTCAG	2 cut(s)	149, 197
BseRI	GAGGAG	3 cut(s)	164, 175, 321
BseXI	GCAGC	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	135
BsiHKAI	GWGCWC	2 cut(s)	246, 267
BsiSI	CCGG	1 cut(s)	300
BsmAI	GTCTC	1 cut(s)	146
BsmBI	CGTCTC	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	246, 267
Bsp143I	GATC	4 cut(s)	66, 168, 175, 219
BspACI	CCGC	3 cut(s)	108, 279, 303
BspCNI	CTCAG	2 cut(s)	150, 198
BspFNI	CGCG	1 cut(s)	135
BspPI	GGATC	1 cut(s)	227
BspQI	GCTCTTC	2 cut(s)	84, 272
BsrFI	RCCGGY	1 cut(s)	299
BssAI	RCCGGY	1 cut(s)	299
BssMI	GATC	4 cut(s)	66, 168, 175, 219
BssNI	GRCGYC	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	102
Bst6I	CTCTTC	2 cut(s)	84, 272
BstACI	GRCGYC	1 cut(s)	138
BstC8I	GCNNGC	2 cut(s)	108, 301
BstDEI	CTNAG	2 cut(s)	158, 206
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	4 cut(s)	69, 171, 178, 222
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	4 cut(s)	66, 168, 175, 219
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	108, 301
CfoI	GCGC	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	299
CseI	GACGC	3 cut(s)	146, 163, 191
CviJI	RGCY	7 cut(s)	32, 38, 94, 120, 226, 244, 317
CviKI_1	RGCY	7 cut(s)	32, 38, 94, 120, 226, 244, 317
DdeI	CTNAG	2 cut(s)	158, 206
DpnI	GATC	4 cut(s)	68, 170, 177, 221
DpnII	GATC	4 cut(s)	66, 168, 175, 219
Eam1104I	CTCTTC	2 cut(s)	84, 272
EarI	CTCTTC	2 cut(s)	84, 272
EciI	GGCGGA	1 cut(s)	318
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	246
Eco53kI	GAGCTC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	54
EcoICRI	GAGCTC	1 cut(s)	244
EcoRI	GAATTC	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	246
Esp3I	CGTCTC	1 cut(s)	146
FaiI	YATR	1 cut(s)	365
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FauI	CCCGC	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	118
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	118
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	1 cut(s)	118
HapII	CCGG	1 cut(s)	300
HgaI	GACGC	3 cut(s)	146, 163, 191
HhaI	GCGC	1 cut(s)	135
Hin1I	GRCGYC	1 cut(s)	138
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	300
Hpy188I	TCNGA	5 cut(s)	173, 180, 207, 325, 355
Hpy188III	TCNNGA	1 cut(s)	251
Hpy99I	CGWCG	2 cut(s)	140, 325
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	102
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	1 cut(s)	43
HpyF3I	CTNAG	2 cut(s)	158, 206
HpySE526I	ACGT	1 cut(s)	338
Hsp92I	GRCGYC	1 cut(s)	138
HspAI	GCGC	1 cut(s)	133
KroI	GCCGGC	1 cut(s)	299
KroNI	GCCGGC	1 cut(s)	301
Kzo9I	GATC	4 cut(s)	66, 168, 175, 219
LguI	GCTCTTC	2 cut(s)	84, 272
LmnI	GCTCC	3 cut(s)	199, 241, 314
LpnPI	CCDG	3 cut(s)	143, 208, 313
Lsp1109I	GCAGC	1 cut(s)	129
MaeII	ACGT	1 cut(s)	338
MalI	GATC	4 cut(s)	68, 170, 177, 221
MboI	GATC	4 cut(s)	66, 168, 175, 219
MboII	GAAGA	4 cut(s)	71, 74, 259, 358
MfeI	CAATTG	1 cut(s)	44
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	2 cut(s)	246, 267
MluCI	AATT	4 cut(s)	44, 57, 326, 349
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	9 cut(s)	131, 142, 153, 181, 189, 201, 210, 247, 299
MreI	CGCCGGCG	1 cut(s)	299
MroNI	GCCGGC	1 cut(s)	299
MseI	TTAA	1 cut(s)	17
MspI	CCGG	1 cut(s)	300
MunI	CAATTG	1 cut(s)	44
MvnI	CGCG	1 cut(s)	135
NaeI	GCCGGC	1 cut(s)	301
NdeII	GATC	4 cut(s)	66, 168, 175, 219
NgoMIV	GCCGGC	1 cut(s)	299
NmeAIII	GCCGAG	1 cut(s)	166
PciSI	GCTCTTC	2 cut(s)	84, 272
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 329
PdiI	GCCGGC	1 cut(s)	301
PkrI	GCNGC	1 cut(s)	119
Psp124BI	GAGCTC	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	246
SapI	GCTCTTC	2 cut(s)	84, 272
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	4 cut(s)	66, 168, 175, 219
SduI	GDGCHC	2 cut(s)	246, 267
SetI	ASST	8 cut(s)	17, 34, 40, 192, 246, 258, 319, 341
SgrAI	CRCCGGYG	1 cut(s)	299
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	4 cut(s)	44, 57, 326, 349
SsiI	CCGC	3 cut(s)	108, 279, 303
SstI	GAGCTC	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	102
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	2 cut(s)	65, 291
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	4 cut(s)	44, 57, 326, 349
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TseI	GCWGC	1 cut(s)	117
XapI	RAATTY	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.