FvH4_5g37350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0006218
Physical Location & Seq
Reverse (-)
27463745 .. 27464737
993 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37350.t1

Sequence Viewer

Length: 330 bp
ATGGAGGCCGAAAACCTAACCCTAGCCGAAGCCGAAGCTCAGCAATCGAGAAACGCAATCCGCTCGATCAAAGTCGCTCTTCTCCTCTCTCGCCTCAAGCCGTCGTCCGCCGATCGCCGCCTCACCGCCGCTGCCGACCGCCGCGACGCTGCTACGGAGGAAAAGGAGGAGGAGTTGAAGAGAGAGATCGGAGATCTGAAAATGGAGGTTGTGAGGGAGCGGCTGAGGAACAAGAGGATCAGGCTCTGTGGATTGATGGAGGTCTTTCTCGAGGTGGCGGTGCTCTTCGTTGCTTGCGGTTTCTTGTTCGCGATCGCCGTCGGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.24

Weight (kDa)

7.78

Isoelectric Point (pI)

59.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 63, 220
AccII CGCG 2 cut(s) 144, 311
AclWI GGATC 1 cut(s) 245
AgsI TTSAA 1 cut(s) 178
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw21I GWGCWC 1 cut(s) 285
AlwI GGATC 1 cut(s) 245
AlwNI CAGNNNCTG 1 cut(s) 246
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 2 cut(s) 131, 149
AsiSI GCGATCGC 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 115
AvaI CYCGRG 1 cut(s) 269
Bbv12I GWGCWC 1 cut(s) 285
BbvCI CCTCAGC 1 cut(s) 224
BbvI GCAGC 2 cut(s) 118, 136
BccI CCATC 1 cut(s) 250
BceAI ACGGC 2 cut(s) 85, 302
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BfaI CTAG 1 cut(s) 23
BglII AGATCT 1 cut(s) 193
BisI GCNGC 6 cut(s) 118, 129, 132, 142, 150, 221
BlpI GCTNAGC 1 cut(s) 39
BlsI GCNGC 6 cut(s) 119, 130, 133, 143, 151, 222
BmeT110I CYCGRG 1 cut(s) 269
Bpu10I CCTNAGC 1 cut(s) 224
Bpu1102I GCTNAGC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
BseMII CTCAG 2 cut(s) 53, 215
BseRI GAGGAG 3 cut(s) 74, 182, 185
BseXI GCAGC 2 cut(s) 118, 136
Bsh1236I CGCG 2 cut(s) 144, 311
Bsh1285I CGRYCG 3 cut(s) 115, 139, 315
BshFI GGCC 1 cut(s) 8
BsiEI CGRYCG 3 cut(s) 115, 139, 315
BsiHKAI GWGCWC 1 cut(s) 285
BsiHKCI CYCGRG 1 cut(s) 269
BsnI GGCC 1 cut(s) 8
BsoBI CYCGRG 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 6 cut(s) 66, 112, 186, 193, 237, 312
Bsp1720I GCTNAGC 1 cut(s) 39
Bsp68I TCGCGA 1 cut(s) 311
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 2 cut(s) 52, 216
BspFNI CGCG 2 cut(s) 144, 311
BspPI GGATC 1 cut(s) 245
BspQI GCTCTTC 2 cut(s) 84, 290
BsrBI CCGCTC 2 cut(s) 63, 220
BssMI GATC 6 cut(s) 66, 112, 186, 193, 237, 312
Bst6I CTCTTC 3 cut(s) 84, 173, 290
BstC8I GCNNGC 1 cut(s) 295
BstDEI CTNAG 2 cut(s) 39, 224
BstFNI CGCG 2 cut(s) 144, 311
BstKTI GATC 6 cut(s) 69, 115, 189, 196, 240, 315
BstMBI GATC 6 cut(s) 66, 112, 186, 193, 237, 312
BstMCI CGRYCG 3 cut(s) 115, 139, 315
BstUI CGCG 2 cut(s) 144, 311
BstV1I GCAGC 2 cut(s) 118, 136
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 1 cut(s) 8
BtuMI TCGCGA 1 cut(s) 311
Cac8I GCNNGC 1 cut(s) 295
CaiI CAGNNNCTG 1 cut(s) 246
CseI GACGC 1 cut(s) 155
CviJI RGCY 7 cut(s) 8, 26, 32, 38, 100, 223, 244
CviKI_1 RGCY 7 cut(s) 8, 26, 32, 38, 100, 223, 244
DdeI CTNAG 2 cut(s) 39, 224
DpnI GATC 6 cut(s) 68, 114, 188, 195, 239, 314
DpnII GATC 6 cut(s) 66, 112, 186, 193, 237, 312
Eam1104I CTCTTC 3 cut(s) 84, 173, 290
EarI CTCTTC 3 cut(s) 84, 173, 290
EciI GGCGGA 1 cut(s) 97
Eco88I CYCGRG 1 cut(s) 269
FalI AAGNNNNNCTT 2 cut(s) 63, 95
Fnu4HI GCNGC 6 cut(s) 118, 129, 132, 142, 150, 221
Fsp4HI GCNGC 6 cut(s) 118, 129, 132, 142, 150, 221
FspBI CTAG 1 cut(s) 23
GluI GCNGC 6 cut(s) 118, 129, 132, 142, 150, 221
HaeIII GGCC 1 cut(s) 8
HgaI GACGC 1 cut(s) 155
HphI GGTGA 1 cut(s) 115
Hpy188I TCNGA 3 cut(s) 191, 198, 323
Hpy188III TCNNGA 3 cut(s) 48, 269, 310
Hpy99I CGWCG 3 cut(s) 106, 149, 323
HpyF3I CTNAG 2 cut(s) 39, 224
Kzo9I GATC 6 cut(s) 66, 112, 186, 193, 237, 312
LguI GCTCTTC 2 cut(s) 84, 290
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 1 cut(s) 226
Lsp1109I GCAGC 2 cut(s) 118, 136
MaeI CTAG 1 cut(s) 23
MalI GATC 6 cut(s) 68, 114, 188, 195, 239, 314
MbiI CCGCTC 2 cut(s) 63, 220
MboI GATC 6 cut(s) 66, 112, 186, 193, 237, 312
MboII GAAGA 3 cut(s) 71, 190, 277
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 1 cut(s) 325
MmeI TCCRAC 1 cut(s) 301
MspA1I CMGCKG 1 cut(s) 131
MvnI CGCG 2 cut(s) 144, 311
NdeII GATC 6 cut(s) 66, 112, 186, 193, 237, 312
NruI TCGCGA 1 cut(s) 311
PaeR7I CTCGAG 1 cut(s) 269
PciSI GCTCTTC 2 cut(s) 84, 290
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PkrI GCNGC 6 cut(s) 119, 130, 133, 143, 151, 222
Ple19I CGATCG 2 cut(s) 115, 315
PstNI CAGNNNCTG 1 cut(s) 246
PsuI RGATCY 1 cut(s) 193
PvuI CGATCG 2 cut(s) 115, 315
RgaI GCGATCGC 1 cut(s) 315
RruI TCGCGA 1 cut(s) 311
SapI GCTCTTC 2 cut(s) 84, 290
SatI GCNGC 6 cut(s) 118, 129, 132, 142, 150, 221
Sau3AI GATC 6 cut(s) 66, 112, 186, 193, 237, 312
SduI GDGCHC 1 cut(s) 285
SetI ASST 5 cut(s) 18, 40, 210, 264, 276
SfaAI GCGATCGC 1 cut(s) 315
Sfr274I CTCGAG 1 cut(s) 269
SgfI GCGATCGC 1 cut(s) 315
SlaI CTCGAG 1 cut(s) 269
SmlI CTYRAG 2 cut(s) 95, 269
SmoI CTYRAG 2 cut(s) 95, 269
Sse9I AATT 1 cut(s) 325
SspMI CTAG 1 cut(s) 23
TaqI TCGA 3 cut(s) 47, 65, 270
TasI AATT 1 cut(s) 325
TauI GCSGC 4 cut(s) 120, 131, 144, 223
TseI GCWGC 2 cut(s) 131, 149
TspGWI ACGGA 1 cut(s) 170
XhoI CTCGAG 1 cut(s) 269
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.