Rmu_sc0004277.1_g000032

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004277.1
OG0006218
Physical Location & Seq
Reverse (-)
117934 .. 118362
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004277.1_g000032.1.cds

Sequence Viewer

Length: 345 bp
atggaggtgaaaaccctaaccctaactgaagccaaagctctgcaatcgagaaacacaattcgctctatcaaagtggctcttcttctctctcggttcaaaccgtcgtcctccgatcgccgcctcactgaccaccgtgacgcctctatggagaaggaggaggcattgaggagagtgatcggagatctgaaaatggaggttgtgagggaccgtctgaggaacaagaggatcaggctatgtggattgatggagtactttcttgaggtcgcggtgctcttcgttctctgctgtctcttgttcgcgatcacaatcagaggagatggaggttcgtcggaattacattactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.11

Weight (kDa)

9.6

Isoelectric Point (pI)

59.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 266, 299
AciI CCGC 2 cut(s) 118, 266
AclWI GGATC 1 cut(s) 233
AcuI CTGAAG 1 cut(s) 48
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 251
AgsI TTSAA 1 cut(s) 97
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 1 cut(s) 293
AlwI GGATC 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 273
BccI CCATC 2 cut(s) 238, 311
BcoDI GTCTC 1 cut(s) 293
BglII AGATCT 1 cut(s) 181
BisI GCNGC 1 cut(s) 118
BlsI GCNGC 1 cut(s) 119
BmcAI AGTACT 1 cut(s) 251
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 305
BsaHI GRCGYC 1 cut(s) 138
Bse8I GATNNNNATC 1 cut(s) 305
BseJI GATNNNNATC 1 cut(s) 305
BseMII CTCAG 1 cut(s) 203
BseRI GAGGAG 3 cut(s) 170, 181, 327
Bsh1236I CGCG 2 cut(s) 266, 299
Bsh1285I CGRYCG 1 cut(s) 115
BsiEI CGRYCG 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 273
BslFI GGGAC 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 5 cut(s) 112, 174, 181, 225, 300
Bsp68I TCGCGA 1 cut(s) 299
BspACI CCGC 2 cut(s) 118, 266
BspCNI CTCAG 1 cut(s) 204
BspFNI CGCG 2 cut(s) 266, 299
BspLI GGNNCC 1 cut(s) 206
BspPI GGATC 1 cut(s) 233
BspQI GCTCTTC 2 cut(s) 84, 278
BssMI GATC 5 cut(s) 112, 174, 181, 225, 300
BssNI GRCGYC 1 cut(s) 138
Bst4CI ACNGT 3 cut(s) 102, 134, 209
Bst6I CTCTTC 2 cut(s) 84, 278
BstACI GRCGYC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 212
BstFNI CGCG 2 cut(s) 266, 299
BstKTI GATC 5 cut(s) 115, 177, 184, 228, 303
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 5 cut(s) 112, 174, 181, 225, 300
BstMCI CGRYCG 1 cut(s) 115
BstUI CGCG 2 cut(s) 266, 299
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BtsIMutI CAGTG 1 cut(s) 123
BtuMI TCGCGA 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 205
CseI GACGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 250
CviJI RGCY 4 cut(s) 32, 38, 77, 232
CviKI_1 RGCY 4 cut(s) 32, 38, 77, 232
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 1 cut(s) 212
DpnI GATC 5 cut(s) 114, 176, 183, 227, 302
DpnII GATC 5 cut(s) 112, 174, 181, 225, 300
Eam1104I CTCTTC 2 cut(s) 84, 278
EarI CTCTTC 2 cut(s) 84, 278
Eco47I GGWCC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 48
FaiI YATR 2 cut(s) 146, 235
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FaqI GGGAC 1 cut(s) 218
Fnu4HI GCNGC 1 cut(s) 118
Fsp4HI GCNGC 1 cut(s) 118
GluI GCNGC 1 cut(s) 118
HgaI GACGC 1 cut(s) 146
Hin1I GRCGYC 1 cut(s) 138
HphI GGTGA 1 cut(s) 19
Hpy188I TCNGA 6 cut(s) 112, 179, 186, 213, 311, 331
Hpy188III TCNNGA 3 cut(s) 48, 257, 298
Hpy99I CGWCG 2 cut(s) 106, 331
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 3 cut(s) 102, 134, 209
HpyCH4V TGCA 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 212
Hsp92I GRCGYC 1 cut(s) 138
Kzo9I GATC 5 cut(s) 112, 174, 181, 225, 300
LguI GCTCTTC 2 cut(s) 84, 278
LpnPI CCDG 1 cut(s) 214
MaeIII GTNAC 1 cut(s) 134
MalI GATC 5 cut(s) 114, 176, 183, 227, 302
MboI GATC 5 cut(s) 112, 174, 181, 225, 300
MboII GAAGA 3 cut(s) 71, 74, 265
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 2 cut(s) 57, 332
MmeI TCCRAC 1 cut(s) 309
MvnI CGCG 2 cut(s) 266, 299
NdeII GATC 5 cut(s) 112, 174, 181, 225, 300
NlaIV GGNNCC 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 134
NruI TCGCGA 1 cut(s) 299
PciSI GCTCTTC 2 cut(s) 84, 278
PkrI GCNGC 1 cut(s) 119
Ple19I CGATCG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 1 cut(s) 205
PsuI RGATCY 1 cut(s) 181
PvuI CGATCG 1 cut(s) 115
RruI TCGCGA 1 cut(s) 299
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SapI GCTCTTC 2 cut(s) 84, 278
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 5 cut(s) 112, 174, 181, 225, 300
Sau96I GGNCC 1 cut(s) 205
ScaI AGTACT 1 cut(s) 251
SduI GDGCHC 1 cut(s) 273
SetI ASST 5 cut(s) 9, 40, 198, 264, 325
SgeI CNNG 9 cut(s) 60, 102, 146, 232, 241, 269, 277, 304, 310
SinI GGWCC 1 cut(s) 205
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 2 cut(s) 57, 332
SsiI CCGC 2 cut(s) 118, 266
TaaI ACNGT 3 cut(s) 102, 134, 209
TaqI TCGA 1 cut(s) 47
TasI AATT 2 cut(s) 57, 332
TatI WGTACW 1 cut(s) 249
TauI GCSGC 1 cut(s) 120
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
TspRI CASTG 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 205
ZrmI AGTACT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.