Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000455.1

Orthogroup ID

OG0006218

Physical Location & Seq

Genomic Coordinates Reverse (-)

149644 .. 150110

Gene Structure 467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000455.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atggtggagattccagtcggagaacttggaatcccggtgttgctcgtgaagaagaagaagaagaagaaattgagagagagagagagagaaattgaggctaaaaccctaaccttagtcccgtcgaagctttgcaatcgagaaccgcaattcactagatcaaagtcgcttttcttctctctcggctcaaactgtcatccgccattcgttcgaccaccgcgacgctgccacggtacggagaaggagaaggcgctgaggagagagatcggagatctgaaaacggaggttgtgagggaacatctgaagagcaagaggatcgggctctgtggattgatggagctctttcttgacgctgtagtgctcttcgttctttgtggttcttgttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.6

Weight (kDa)

9.79

Isoelectric Point (pI)

52.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78172
fragaria_vesca	FvH4_5g37350
malus_domestica	MD08G1182600.v1.1 MD15G1368300.v1.1
prunus_persica	Prupe.1G516500_v2.0.a1
pyrus_communis	pycom15g33020
rosa_chinensis	RchiOBHm_Chr7g0239021
rosa_laevigata	RLG00000000790 RLG00000012650 RLG00000033412
rosa_multiflora	Rmu_sc0000455.1_g000036 Rmu_sc0000565.1_g000035 Rmu_sc0004277.1_g000032 Rmu_sc0005651.1_g000004
rosa_roxburghii	Rroxscaffold_1G00042860 Rroxscaffold_3G00220070 Rroxscaffold_3G00221360
rosa_rugosa	Rorug07G0324700 Rorug07G0324700
rosa_samantha	Rh7AG393400 Rh7AG479500 Rh7CG412600 Rh7CG497000 Rh7DG464500
rosa_wichuraiana	Rw5G047320 Rw7G040090 Rw7G041080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	217
AciI	CCGC	3 cut(s)	143, 197, 215
AclWI	GGATC	1 cut(s)	320
AcuI	CTGAAG	1 cut(s)	320
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	232
AloI	GAACNNNNNNTCC	2 cut(s)	15, 47
AluBI	AGCT	2 cut(s)	127, 337
AluI	AGCT	2 cut(s)	127, 337
Alw21I	GWGCWC	2 cut(s)	339, 360
AlwI	GGATC	1 cut(s)	320
ApeKI	GCWGC	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	250
AsuC2I	CCSGG	1 cut(s)	35
BanII	GRGCYC	2 cut(s)	321, 339
BauI	CACGAG	1 cut(s)	44
Bbv12I	GWGCWC	2 cut(s)	339, 360
BbvCI	CCTCAGC	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	209
BccI	CCATC	1 cut(s)	325
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BcnI	CCSGG	1 cut(s)	35
BfaI	CTAG	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	351
BfoI	RGCGCY	1 cut(s)	251
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	1 cut(s)	223
BlsI	GCNGC	1 cut(s)	224
Bme1390I	CCNGG	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	35
Bpu10I	CCTNAGC	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse1I	ACTGG	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	209
Bsh1236I	CGCG	1 cut(s)	217
BsiHKAI	GWGCWC	2 cut(s)	339, 360
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	101
Bsp1286I	GDGCHC	3 cut(s)	321, 339, 360
Bsp143I	GATC	4 cut(s)	155, 261, 268, 312
BspACI	CCGC	3 cut(s)	143, 197, 215
BspCNI	CTCAG	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	217
BspHI	TCATGA	1 cut(s)	383
BspPI	GGATC	1 cut(s)	320
BspQI	GCTCTTC	2 cut(s)	296, 365
BsrI	ACTGG	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	4 cut(s)	155, 261, 268, 312
BssSI	CACGAG	1 cut(s)	44
Bst2BI	CACGAG	1 cut(s)	44
Bst4CI	ACNGT	2 cut(s)	191, 230
Bst6I	CTCTTC	2 cut(s)	296, 365
BstDEI	CTNAG	2 cut(s)	112, 251
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	193
BstFNI	CGCG	1 cut(s)	217
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	4 cut(s)	158, 264, 271, 315
BstMBI	GATC	4 cut(s)	155, 261, 268, 312
BstSCI	CCNGG	1 cut(s)	33
BstSFI	CTRYAG	1 cut(s)	351
BstUI	CGCG	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	209
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	193
CciI	TCATGA	1 cut(s)	383
CfoI	GCGC	1 cut(s)	250
CseI	GACGC	2 cut(s)	228, 356
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	1 cut(s)	384
CviJI	RGCY	5 cut(s)	98, 127, 183, 319, 337
CviKI_1	RGCY	5 cut(s)	98, 127, 183, 319, 337
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	2 cut(s)	112, 251
DpnI	GATC	4 cut(s)	157, 263, 270, 314
DpnII	GATC	4 cut(s)	155, 261, 268, 312
Eam1104I	CTCTTC	2 cut(s)	296, 365
EarI	CTCTTC	2 cut(s)	296, 365
EciI	GGCGGA	1 cut(s)	186
Ecl136II	GAGCTC	1 cut(s)	337
Eco24I	GRGCYC	2 cut(s)	321, 339
Eco53kI	GAGCTC	1 cut(s)	337
Eco57I	CTGAAG	1 cut(s)	320
EcoICRI	GAGCTC	1 cut(s)	337
EcoT38I	GRGCYC	2 cut(s)	321, 339
FaeI	CATG	1 cut(s)	387
FaiI	YATR	1 cut(s)	385
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	1 cut(s)	383
Fnu4HI	GCNGC	1 cut(s)	223
FokI	GGATG	1 cut(s)	180
FriOI	GRGCYC	2 cut(s)	321, 339
Fsp4HI	GCNGC	1 cut(s)	223
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	223
HaeII	RGCGCY	1 cut(s)	251
HapII	CCGG	1 cut(s)	35
HgaI	GACGC	2 cut(s)	228, 356
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	1 cut(s)	387
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	2 cut(s)	10, 30
HpaII	CCGG	1 cut(s)	35
Hpy188I	TCNGA	4 cut(s)	20, 266, 273, 300
Hpy188III	TCNNGA	4 cut(s)	46, 137, 344, 384
Hpy99I	CGWCG	2 cut(s)	124, 222
HpyAV	CCTTC	2 cut(s)	232, 238
HpyCH4III	ACNGT	2 cut(s)	191, 230
HpyCH4V	TGCA	1 cut(s)	132
HpyF3I	CTNAG	2 cut(s)	112, 251
Hsp92II	CATG	1 cut(s)	387
HspAI	GCGC	1 cut(s)	248
Kzo9I	GATC	4 cut(s)	155, 261, 268, 312
LguI	GCTCTTC	2 cut(s)	296, 365
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	2 cut(s)	27, 48
Lsp1109I	GCAGC	1 cut(s)	209
MaeI	CTAG	1 cut(s)	153
MalI	GATC	4 cut(s)	157, 263, 270, 314
MboI	GATC	4 cut(s)	155, 261, 268, 312
MboII	GAAGA	9 cut(s)	61, 64, 67, 70, 73, 76, 163, 313, 352
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	3 cut(s)	321, 339, 360
MluCI	AATT	3 cut(s)	68, 90, 146
MnlI	CCTC	5 cut(s)	88, 246, 274, 282, 303
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	217
NciI	CCSGG	1 cut(s)	35
NdeII	GATC	4 cut(s)	155, 261, 268, 312
NlaIII	CATG	1 cut(s)	387
NmeAIII	GCCGAG	1 cut(s)	159
PagI	TCATGA	1 cut(s)	383
PciSI	GCTCTTC	2 cut(s)	296, 365
PcsI	WCGNNNNNNNCGW	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	10, 30
PkrI	GCNGC	1 cut(s)	224
Psp124BI	GAGCTC	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
SacI	GAGCTC	1 cut(s)	339
SapI	GCTCTTC	2 cut(s)	296, 365
SatI	GCNGC	1 cut(s)	223
Sau3AI	GATC	4 cut(s)	155, 261, 268, 312
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	3 cut(s)	321, 339, 360
SetI	ASST	4 cut(s)	113, 129, 285, 339
SfcI	CTRYAG	1 cut(s)	351
Sse9I	AATT	3 cut(s)	68, 90, 146
SsiI	CCGC	3 cut(s)	143, 197, 215
SspMI	CTAG	1 cut(s)	153
SstI	GAGCTC	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	33
TaaI	ACNGT	2 cut(s)	191, 230
TaqI	TCGA	3 cut(s)	122, 136, 208
TasI	AATT	3 cut(s)	68, 90, 146
TfiI	GAWTC	2 cut(s)	10, 30
TseI	GCWGC	1 cut(s)	222
TspDTI	ATGAA	1 cut(s)	372
TspGWI	ACGGA	2 cut(s)	248, 293
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.