Prupe.1G516500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0006218
Physical Location & Seq
Forward (+)
42487432 .. 42488350
919 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G516500.1

Sequence Viewer

Length: 333 bp
ATGGAGGGAAGAGAGACCCAAACCAAAGGCGAAGGAGGCGAAGCTCTGAGATCGCATGCTGCAATTCGCTGTGCAAAAGCCGCTCTTCTTCTTTCTTCTCTCAAATCGCCGCCCAATCGCAGCCTCGACACCGCAATCGACAACGACGACATTTTGGAGAAGGAGATTCTCAGGAGAGAGATCGGAGATCTGAAAATGGAGGTTGCGAGGGAGCGACTCCTGAACAAGAGGATCAAGCTCTGCGGCTTGTTGGAGCTTCTTCTTCAGCTGGTGTTGCTCTTGGCCCTTTCCATTTTCTTTTTCATGCTCGCGTTCGAAAATGGAGCTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.24

Weight (kDa)

6.59

Isoelectric Point (pI)

43.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 83
AccII CGCG 1 cut(s) 311
AciI CCGC 4 cut(s) 81, 110, 132, 243
AclWI GGATC 1 cut(s) 239
AcuI CTGAAG 1 cut(s) 248
AluBI AGCT 5 cut(s) 44, 238, 256, 268, 326
AluI AGCT 5 cut(s) 44, 238, 256, 268, 326
Alw26I GTCTC 1 cut(s) 8
AlwI GGATC 1 cut(s) 239
AoxI GGCC 1 cut(s) 282
ApeKI GCWGC 2 cut(s) 59, 120
AspS9I GGNCC 1 cut(s) 283
AsuII TTCGAA 1 cut(s) 315
BbvI GCAGC 2 cut(s) 46, 132
BcoDI GTCTC 1 cut(s) 8
BglII AGATCT 1 cut(s) 187
BisI GCNGC 5 cut(s) 60, 81, 110, 121, 244
BlsI GCNGC 5 cut(s) 61, 82, 111, 122, 245
BmgT120I GGNCC 1 cut(s) 283
Bpu14I TTCGAA 1 cut(s) 315
BsaI GGTCTC 1 cut(s) 8
BseMII CTCAG 2 cut(s) 38, 184
BseXI GCAGC 2 cut(s) 46, 132
Bsh1236I CGCG 1 cut(s) 311
BshFI GGCC 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 8
BsnI GGCC 1 cut(s) 284
Bso31I GGTCTC 1 cut(s) 8
Bsp119I TTCGAA 1 cut(s) 315
Bsp143I GATC 4 cut(s) 50, 180, 187, 231
BspACI CCGC 4 cut(s) 81, 110, 132, 243
BspANI GGCC 1 cut(s) 284
BspCNI CTCAG 2 cut(s) 39, 183
BspFNI CGCG 1 cut(s) 311
BspPI GGATC 1 cut(s) 239
BspQI GCTCTTC 1 cut(s) 90
BspT104I TTCGAA 1 cut(s) 315
BspTNI GGTCTC 1 cut(s) 8
BsrBI CCGCTC 1 cut(s) 83
BssMI GATC 4 cut(s) 50, 180, 187, 231
Bst6I CTCTTC 2 cut(s) 4, 90
BstBI TTCGAA 1 cut(s) 315
BstC8I GCNNGC 2 cut(s) 57, 309
BstDEI CTNAG 2 cut(s) 47, 170
BstFNI CGCG 1 cut(s) 311
BstKTI GATC 4 cut(s) 53, 183, 190, 234
BstMAI GTCTC 1 cut(s) 8
BstMBI GATC 4 cut(s) 50, 180, 187, 231
BstMWI GCNNNNNNNGC 3 cut(s) 36, 80, 274
BstNSI RCATGY 1 cut(s) 59
BstUI CGCG 1 cut(s) 311
BstV1I GCAGC 2 cut(s) 46, 132
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BsuRI GGCC 1 cut(s) 284
Cac8I GCNNGC 2 cut(s) 57, 309
Cfr13I GGNCC 1 cut(s) 283
CviAII CATG 2 cut(s) 56, 304
CviJI RGCY 9 cut(s) 44, 80, 123, 238, 246, 256, 268, 284, 326
CviKI_1 RGCY 9 cut(s) 44, 80, 123, 238, 246, 256, 268, 284, 326
DdeI CTNAG 2 cut(s) 47, 170
DpnI GATC 4 cut(s) 52, 182, 189, 233
DpnII GATC 4 cut(s) 50, 180, 187, 231
Eam1104I CTCTTC 2 cut(s) 4, 90
EarI CTCTTC 2 cut(s) 4, 90
Eco31I GGTCTC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 248
FaeI CATG 2 cut(s) 59, 307
FaiI YATR 2 cut(s) 57, 305
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FatI CATG 2 cut(s) 55, 303
Fnu4HI GCNGC 5 cut(s) 60, 81, 110, 121, 244
Fsp4HI GCNGC 5 cut(s) 60, 81, 110, 121, 244
GluI GCNGC 5 cut(s) 60, 81, 110, 121, 244
HaeIII GGCC 1 cut(s) 284
Hin1II CATG 2 cut(s) 59, 307
HinfI GANTC 2 cut(s) 166, 216
Hpy188I TCNGA 3 cut(s) 48, 185, 192
Hpy188III TCNNGA 2 cut(s) 172, 220
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 2 cut(s) 26, 154
HpyCH4V TGCA 2 cut(s) 62, 74
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 80, 274
HpyF3I CTNAG 2 cut(s) 47, 170
Hsp92II CATG 2 cut(s) 59, 307
Kzo9I GATC 4 cut(s) 50, 180, 187, 231
LguI GCTCTTC 1 cut(s) 90
LmnI GCTCC 3 cut(s) 211, 253, 323
LpnPI CCDG 3 cut(s) 157, 233, 254
Lsp1109I GCAGC 2 cut(s) 46, 132
MalI GATC 4 cut(s) 52, 182, 189, 233
MbiI CCGCTC 1 cut(s) 83
MboI GATC 4 cut(s) 50, 180, 187, 231
MboII GAAGA 6 cut(s) 21, 77, 80, 87, 251, 254
MflI RGATCY 1 cut(s) 187
MluCI AATT 1 cut(s) 63
MlyI GAGTC 1 cut(s) 210
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 5 cut(s) 29, 134, 193, 201, 222
MspA1I CMGCKG 1 cut(s) 268
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 3 cut(s) 36, 80, 274
NdeII GATC 4 cut(s) 50, 180, 187, 231
NlaIII CATG 2 cut(s) 59, 307
NspI RCATGY 1 cut(s) 59
NspV TTCGAA 1 cut(s) 315
PaeI GCATGC 1 cut(s) 59
PciSI GCTCTTC 1 cut(s) 90
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PfeI GAWTC 1 cut(s) 166
PkrI GCNGC 5 cut(s) 61, 82, 111, 122, 245
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
PspPI GGNCC 1 cut(s) 283
PsuI RGATCY 1 cut(s) 187
PvuII CAGCTG 1 cut(s) 268
SapI GCTCTTC 1 cut(s) 90
SatI GCNGC 5 cut(s) 60, 81, 110, 121, 244
Sau3AI GATC 4 cut(s) 50, 180, 187, 231
Sau96I GGNCC 1 cut(s) 283
SchI GAGTC 1 cut(s) 210
SetI ASST 6 cut(s) 46, 204, 240, 258, 270, 328
SfuI TTCGAA 1 cut(s) 315
SphI GCATGC 1 cut(s) 59
Sse9I AATT 1 cut(s) 63
SsiI CCGC 4 cut(s) 81, 110, 132, 243
TaqI TCGA 3 cut(s) 126, 138, 315
TasI AATT 1 cut(s) 63
TauI GCSGC 3 cut(s) 83, 112, 246
TfiI GAWTC 1 cut(s) 166
TseI GCWGC 2 cut(s) 59, 120
TspDTI ATGAA 1 cut(s) 292
XceI RCATGY 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.