Rw7G041080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0006218
Physical Location & Seq
Forward (+)
64035958 .. 64036385
428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041080.1

Sequence Viewer

Length: 315 bp
ATGGAGGATGAAACCCAAACCCTAATCGAAGCCGAAGCTCTGCAATCGAGAATCGCAATTCGCTCAATCAAAGTTGCTCTTCTTCTTTCTCGACTCAAACCTTCGTCCATCGATCGCCGCCTCACCGATCACCGCGACGCCGTTACAATACATATGAAAATGGAGGTTGTGAGGGAGCGTCTGAGGAACAAGAGGATCAGGCTATGTGGATTGATGGAGCTCTTTCTTGAGGTCGCGGTGCACTTCGTTCTCTGCGGTCTCTTGTTCGCGATCGCAGTAGGAGGAGATGGAGGTTCGTTGGAATTACGTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.82

Weight (kDa)

8.77

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 135, 236, 269
AciI CCGC 4 cut(s) 118, 133, 236, 255
AclWI GGATC 1 cut(s) 203
AcyI GRCGYC 1 cut(s) 138
AluBI AGCT 2 cut(s) 38, 220
AluI AGCT 2 cut(s) 38, 220
Alw21I GWGCWC 2 cut(s) 222, 243
Alw26I GTCTC 1 cut(s) 263
Alw44I GTGCAC 1 cut(s) 239
AlwI GGATC 1 cut(s) 203
ApaLI GTGCAC 1 cut(s) 239
AsiSI GCGATCGC 1 cut(s) 273
AsuHPI GGTGA 2 cut(s) 115, 122
BaeGI GKGCMC 1 cut(s) 243
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 2 cut(s) 222, 243
BccI CCATC 3 cut(s) 116, 208, 281
BceAI ACGGC 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 263
BisI GCNGC 1 cut(s) 118
BlsI GCNGC 1 cut(s) 119
BpuEI CTTGAG 1 cut(s) 248
Bsa29I ATCGAT 1 cut(s) 111
BsaHI GRCGYC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 263
BseCI ATCGAT 1 cut(s) 111
BseGI GGATG 1 cut(s) 13
BseMII CTCAG 1 cut(s) 173
BseRI GAGGAG 1 cut(s) 297
BseSI GKGCMC 1 cut(s) 243
Bsh1236I CGCG 3 cut(s) 135, 236, 269
Bsh1285I CGRYCG 2 cut(s) 115, 273
BshVI ATCGAT 1 cut(s) 111
BsiEI CGRYCG 2 cut(s) 115, 273
BsiHKAI GWGCWC 2 cut(s) 222, 243
BsmAI GTCTC 1 cut(s) 263
Bso31I GGTCTC 1 cut(s) 263
Bsp1286I GDGCHC 2 cut(s) 222, 243
Bsp143I GATC 4 cut(s) 112, 127, 195, 270
Bsp68I TCGCGA 1 cut(s) 269
BspACI CCGC 4 cut(s) 118, 133, 236, 255
BspCNI CTCAG 1 cut(s) 174
BspDI ATCGAT 1 cut(s) 111
BspFNI CGCG 3 cut(s) 135, 236, 269
BspPI GGATC 1 cut(s) 203
BspQI GCTCTTC 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 263
BssMI GATC 4 cut(s) 112, 127, 195, 270
BssNI GRCGYC 1 cut(s) 138
Bst6I CTCTTC 1 cut(s) 84
BstACI GRCGYC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 182
BstF5I GGATG 1 cut(s) 13
BstFNI CGCG 3 cut(s) 135, 236, 269
BstKTI GATC 4 cut(s) 115, 130, 198, 273
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 4 cut(s) 112, 127, 195, 270
BstMCI CGRYCG 2 cut(s) 115, 273
BstSLI GKGCMC 1 cut(s) 243
BstUI CGCG 3 cut(s) 135, 236, 269
Bsu15I ATCGAT 1 cut(s) 111
BsuTUI ATCGAT 1 cut(s) 111
BtsCI GGATG 1 cut(s) 13
BtuMI TCGCGA 1 cut(s) 269
ClaI ATCGAT 1 cut(s) 111
CseI GACGC 2 cut(s) 146, 167
CviJI RGCY 4 cut(s) 32, 38, 202, 220
CviKI_1 RGCY 4 cut(s) 32, 38, 202, 220
DdeI CTNAG 1 cut(s) 182
DpnI GATC 4 cut(s) 114, 129, 197, 272
DpnII GATC 4 cut(s) 112, 127, 195, 270
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 220
EcoICRI GAGCTC 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 222
FaiI YATR 3 cut(s) 153, 155, 205
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FauNDI CATATG 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 118
FokI GGATG 1 cut(s) 20
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 118
GluI GCNGC 1 cut(s) 118
HgaI GACGC 2 cut(s) 146, 167
Hin1I GRCGYC 1 cut(s) 138
HinfI GANTC 2 cut(s) 51, 93
HphI GGTGA 2 cut(s) 115, 122
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 4 cut(s) 48, 90, 227, 268
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 111
HpyCH4IV ACGT 1 cut(s) 307
HpyCH4V TGCA 2 cut(s) 43, 241
HpyF3I CTNAG 1 cut(s) 182
HpySE526I ACGT 1 cut(s) 307
Hsp92I GRCGYC 1 cut(s) 138
Kzo9I GATC 4 cut(s) 112, 127, 195, 270
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 2 cut(s) 175, 217
LpnPI CCDG 1 cut(s) 184
MaeII ACGT 1 cut(s) 307
MaeIII GTNAC 2 cut(s) 142, 308
MalI GATC 4 cut(s) 114, 129, 197, 272
MboI GATC 4 cut(s) 112, 127, 195, 270
MboII GAAGA 2 cut(s) 71, 74
MhlI GDGCHC 2 cut(s) 222, 243
MluCI AATT 2 cut(s) 57, 302
MlyI GAGTC 1 cut(s) 87
MmeI TCCRAC 1 cut(s) 279
MnlI CCTC 8 cut(s) 131, 157, 165, 177, 186, 223, 275, 284
MvnI CGCG 3 cut(s) 135, 236, 269
NdeI CATATG 1 cut(s) 153
NdeII GATC 4 cut(s) 112, 127, 195, 270
NruI TCGCGA 1 cut(s) 269
PciSI GCTCTTC 1 cut(s) 84
PfeI GAWTC 1 cut(s) 51
PkrI GCNGC 1 cut(s) 119
Ple19I CGATCG 2 cut(s) 115, 273
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
Psp124BI GAGCTC 1 cut(s) 222
PvuI CGATCG 2 cut(s) 115, 273
RgaI GCGATCGC 1 cut(s) 273
RruI TCGCGA 1 cut(s) 269
SacI GAGCTC 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 84
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 4 cut(s) 112, 127, 195, 270
SchI GAGTC 1 cut(s) 87
SduI GDGCHC 2 cut(s) 222, 243
SetI ASST 7 cut(s) 40, 103, 168, 222, 234, 295, 310
SfaAI GCGATCGC 1 cut(s) 273
SgeI CNNG 9 cut(s) 60, 102, 146, 202, 211, 239, 247, 274, 280
SgfI GCGATCGC 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 2 cut(s) 57, 302
SsiI CCGC 4 cut(s) 118, 133, 236, 255
SstI GAGCTC 1 cut(s) 222
TaiI ACGT 1 cut(s) 310
TaqI TCGA 4 cut(s) 27, 47, 91, 111
TasI AATT 2 cut(s) 57, 302
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 1 cut(s) 51
TspDTI ATGAA 2 cut(s) 24, 170
VneI GTGCAC 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.