MD08G1182600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0006218
Physical Location & Seq
Forward (+)
22648081 .. 22648761
681 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1182600.v1.1.491

Sequence Viewer

Length: 279 bp
ATGTCGCAATTCGCTGTGCAAAAGCCGCGCTTCTTCTCTCTTCGCTCAAATCATCGCCCGCTCGCCGCCGCGACACTGCAGTCGACGACGATGACGACATTGCCGTACGAGAAGGAGATGAAGAAGGAGATCGGAGATCTGAAAGTGGAGGTTGCGAGGGAGCGACTCAGGAACAAGAGGATCAAGATCTTCGGCTTTCTGGAGCTCCTTCTTCTTGCGTTGCTATTTGCAGTTTCCGTTTTCCTTTTCATGCTCGCGTTCGAAGCTGGAGCTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.52

Weight (kDa)

10.2

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 79
AccBSI CCGCTC 1 cut(s) 61
AccI GTMKAC 1 cut(s) 83
AccII CGCG 3 cut(s) 28, 71, 257
AciI CCGC 4 cut(s) 26, 59, 66, 69
AclWI GGATC 1 cut(s) 188
AfaI GTAC 1 cut(s) 107
AluBI AGCT 3 cut(s) 205, 266, 272
AluI AGCT 3 cut(s) 205, 266, 272
Alw21I GWGCWC 1 cut(s) 207
AlwI GGATC 1 cut(s) 188
AspLEI GCGC 1 cut(s) 30
AsuII TTCGAA 1 cut(s) 261
BanII GRGCYC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 207
BceAI ACGGC 1 cut(s) 88
BfmI CTRYAG 1 cut(s) 77
BglII AGATCT 2 cut(s) 136, 186
BisI GCNGC 3 cut(s) 26, 66, 69
BlsI GCNGC 3 cut(s) 27, 67, 70
BpmI CTGGAG 1 cut(s) 221
Bpu14I TTCGAA 1 cut(s) 261
BsaBI GATNNNNATC 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 98
Bse8I GATNNNNATC 1 cut(s) 185
BseJI GATNNNNATC 1 cut(s) 185
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 1 cut(s) 181
Bsh1236I CGCG 3 cut(s) 28, 71, 257
BsiHKAI GWGCWC 1 cut(s) 207
BsiWI CGTACG 1 cut(s) 105
Bsp119I TTCGAA 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 4 cut(s) 129, 136, 180, 186
BspACI CCGC 4 cut(s) 26, 59, 66, 69
BspCNI CTCAG 1 cut(s) 180
BspFNI CGCG 3 cut(s) 28, 71, 257
BspMAI CTGCAG 1 cut(s) 81
BspPI GGATC 1 cut(s) 188
BspT104I TTCGAA 1 cut(s) 261
BsrBI CCGCTC 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 98
BssMI GATC 4 cut(s) 129, 136, 180, 186
Bst6I CTCTTC 1 cut(s) 45
BstBI TTCGAA 1 cut(s) 261
BstC8I GCNNGC 3 cut(s) 59, 63, 255
BstDEI CTNAG 1 cut(s) 167
BstFNI CGCG 3 cut(s) 28, 71, 257
BstHHI GCGC 1 cut(s) 30
BstKTI GATC 4 cut(s) 132, 139, 183, 189
BstMBI GATC 4 cut(s) 129, 136, 180, 186
BstMWI GCNNNNNNNGC 2 cut(s) 25, 263
BstSFI CTRYAG 1 cut(s) 77
BstUI CGCG 3 cut(s) 28, 71, 257
BstX2I RGATCY 2 cut(s) 136, 186
BstYI RGATCY 2 cut(s) 136, 186
BtgZI GCGATG 1 cut(s) 38
BtsI GCAGTG 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 74
Cac8I GCNNGC 3 cut(s) 59, 63, 255
CfoI GCGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 106
CviAII CATG 1 cut(s) 250
CviJI RGCY 5 cut(s) 25, 195, 205, 266, 272
CviKI_1 RGCY 5 cut(s) 25, 195, 205, 266, 272
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 1 cut(s) 167
DpnI GATC 4 cut(s) 131, 138, 182, 188
DpnII GATC 4 cut(s) 129, 136, 180, 186
DrdI GACNNNNNNGTC 1 cut(s) 79
DseDI GACNNNNNNGTC 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Ecl136II GAGCTC 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 207
FaeI CATG 1 cut(s) 253
FaiI YATR 1 cut(s) 251
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FatI CATG 1 cut(s) 249
FauI CCCGC 1 cut(s) 66
FblI GTMKAC 1 cut(s) 83
Fnu4HI GCNGC 3 cut(s) 26, 66, 69
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 3 cut(s) 26, 66, 69
GlaI GCGC 1 cut(s) 29
GluI GCNGC 3 cut(s) 26, 66, 69
GsuI CTGGAG 1 cut(s) 221
HhaI GCGC 1 cut(s) 30
Hin1II CATG 1 cut(s) 253
Hin6I GCGC 1 cut(s) 28
HinP1I GCGC 1 cut(s) 28
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HinfI GANTC 1 cut(s) 165
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 2 cut(s) 134, 141
Hpy188III TCNNGA 3 cut(s) 169, 184, 200
Hpy8I GTNNAC 1 cut(s) 84
Hpy99I CGWCG 2 cut(s) 88, 91
HpyAV CCTTC 3 cut(s) 106, 118, 218
HpyCH4V TGCA 3 cut(s) 19, 79, 230
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 263
HpyF3I CTNAG 1 cut(s) 167
Hsp92II CATG 1 cut(s) 253
HspAI GCGC 1 cut(s) 28
Kzo9I GATC 4 cut(s) 129, 136, 180, 186
LmnI GCTCC 4 cut(s) 160, 202, 210, 269
LpnPI CCDG 3 cut(s) 154, 185, 252
MalI GATC 4 cut(s) 131, 138, 182, 188
MbiI CCGCTC 1 cut(s) 61
MboI GATC 4 cut(s) 129, 136, 180, 186
MboII GAAGA 5 cut(s) 25, 32, 133, 181, 203
MflI RGATCY 2 cut(s) 136, 186
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 1 cut(s) 8
MlyI GAGTC 1 cut(s) 159
MnlI CCTC 3 cut(s) 142, 150, 171
MvnI CGCG 3 cut(s) 28, 71, 257
MwoI GCNNNNNNNGC 2 cut(s) 25, 263
NdeII GATC 4 cut(s) 129, 136, 180, 186
NlaIII CATG 1 cut(s) 253
NspV TTCGAA 1 cut(s) 261
PcsI WCGNNNNNNNCGW 2 cut(s) 92, 101
Pfl23II CGTACG 1 cut(s) 105
PkrI GCNGC 3 cut(s) 27, 67, 70
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 207
PspLI CGTACG 1 cut(s) 105
PstI CTGCAG 1 cut(s) 81
PsuI RGATCY 2 cut(s) 136, 186
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SacI GAGCTC 1 cut(s) 207
SalI GTCGAC 1 cut(s) 82
SatI GCNGC 3 cut(s) 26, 66, 69
Sau3AI GATC 4 cut(s) 129, 136, 180, 186
SchI GAGTC 1 cut(s) 159
SduI GDGCHC 1 cut(s) 207
SetI ASST 4 cut(s) 153, 207, 268, 274
SfcI CTRYAG 1 cut(s) 77
SfuI TTCGAA 1 cut(s) 261
Sse9I AATT 1 cut(s) 8
SsiI CCGC 4 cut(s) 26, 59, 66, 69
SstI GAGCTC 1 cut(s) 207
TaqI TCGA 2 cut(s) 83, 261
TasI AATT 1 cut(s) 8
TauI GCSGC 3 cut(s) 28, 68, 71
TscAI CASTG 1 cut(s) 81
TspDTI ATGAA 2 cut(s) 134, 238
TspGWI ACGGA 1 cut(s) 226
TspRI CASTG 1 cut(s) 81
XmiI GTMKAC 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.