Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006218

Physical Location & Seq

Genomic Coordinates Forward (+)

5523997 .. 5524424

Gene Structure 428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000790

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAGGCCGAAACCCAAACCCTAACCGAAGCCGAAGCTCTGCAATCGAGAAACGCAATTCGCTCGATCAAAGTCGCTCTTCTTCTCTCTCGGCTCAAACCTTCGTCCGTCGATCGCCGCCTCACCGACCACCGCGACGCCGCTACAGAGAAGGAGGAGGCGCTGAGGAGAGAGATCGGAGATCTGAAAATGGAGGTTGTGAGGGAGCGTCTGAGGAACAAGAGGATCAGGCTATGTGGATTGACGGAGCTCTTTCTTGAGGTCGCGGTGCTCTTCGTTCTCTGCGGTCTCTTGTTCGCGATCGCAGTCGGAGGAGATGGAGGTTCGTCGGAATTACGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

12.8

Weight (kDa)

7.8

Isoelectric Point (pI)

59.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006218)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78172
fragaria_vesca	FvH4_5g37350
malus_domestica	MD08G1182600.v1.1 MD15G1368300.v1.1
prunus_persica	Prupe.1G516500_v2.0.a1
pyrus_communis	pycom15g33020
rosa_chinensis	RchiOBHm_Chr7g0239021
rosa_laevigata	RLG00000000790 RLG00000012650 RLG00000033412
rosa_multiflora	Rmu_sc0000455.1_g000036 Rmu_sc0000565.1_g000035 Rmu_sc0004277.1_g000032 Rmu_sc0005651.1_g000004
rosa_roxburghii	Rroxscaffold_1G00042860 Rroxscaffold_3G00220070 Rroxscaffold_3G00221360
rosa_rugosa	Rorug07G0324700 Rorug07G0324700
rosa_samantha	Rh7AG393400 Rh7AG479500 Rh7CG412600 Rh7CG497000 Rh7DG464500
rosa_wichuraiana	Rw5G047320 Rw7G040090 Rw7G041080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	135, 266, 299
AciI	CCGC	5 cut(s)	118, 133, 141, 266, 285
AclWI	GGATC	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	138
AluBI	AGCT	2 cut(s)	38, 250
AluI	AGCT	2 cut(s)	38, 250
Alw21I	GWGCWC	2 cut(s)	252, 273
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	233
AoxI	GGCC	1 cut(s)	6
AsiSI	GCGATCGC	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	252
Bbv12I	GWGCWC	2 cut(s)	252, 273
BbvCI	CCTCAGC	1 cut(s)	164
BccI	CCATC	1 cut(s)	311
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BcoDI	GTCTC	1 cut(s)	293
BfmI	CTRYAG	1 cut(s)	144
BfoI	RGCGCY	1 cut(s)	164
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	2 cut(s)	118, 141
BlsI	GCNGC	2 cut(s)	119, 142
Bpu10I	CCTNAGC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	293
BseMII	CTCAG	2 cut(s)	155, 203
BseRI	GAGGAG	3 cut(s)	170, 181, 327
Bsh1236I	CGCG	3 cut(s)	135, 266, 299
Bsh1285I	CGRYCG	2 cut(s)	115, 303
BshFI	GGCC	1 cut(s)	8
BsiEI	CGRYCG	2 cut(s)	115, 303
BsiHKAI	GWGCWC	2 cut(s)	252, 273
BsmAI	GTCTC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	8
Bso31I	GGTCTC	1 cut(s)	293
Bsp1286I	GDGCHC	2 cut(s)	252, 273
Bsp143I	GATC	6 cut(s)	66, 112, 174, 181, 225, 300
Bsp68I	TCGCGA	1 cut(s)	299
BspACI	CCGC	5 cut(s)	118, 133, 141, 266, 285
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	2 cut(s)	156, 204
BspFNI	CGCG	3 cut(s)	135, 266, 299
BspPI	GGATC	1 cut(s)	233
BspQI	GCTCTTC	2 cut(s)	84, 278
BspTNI	GGTCTC	1 cut(s)	293
BssMI	GATC	6 cut(s)	66, 112, 174, 181, 225, 300
BssNI	GRCGYC	1 cut(s)	138
Bst6I	CTCTTC	2 cut(s)	84, 278
BstACI	GRCGYC	1 cut(s)	138
BstDEI	CTNAG	2 cut(s)	164, 212
BstFNI	CGCG	3 cut(s)	135, 266, 299
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	6 cut(s)	69, 115, 177, 184, 228, 303
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	6 cut(s)	66, 112, 174, 181, 225, 300
BstMCI	CGRYCG	2 cut(s)	115, 303
BstSFI	CTRYAG	1 cut(s)	144
BstUI	CGCG	3 cut(s)	135, 266, 299
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	8
BtuMI	TCGCGA	1 cut(s)	299
CfoI	GCGC	1 cut(s)	163
CseI	GACGC	2 cut(s)	146, 197
CviJI	RGCY	6 cut(s)	8, 32, 38, 94, 232, 250
CviKI_1	RGCY	6 cut(s)	8, 32, 38, 94, 232, 250
DdeI	CTNAG	2 cut(s)	164, 212
DpnI	GATC	6 cut(s)	68, 114, 176, 183, 227, 302
DpnII	GATC	6 cut(s)	66, 112, 174, 181, 225, 300
Eam1104I	CTCTTC	2 cut(s)	84, 278
EarI	CTCTTC	2 cut(s)	84, 278
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	293
Eco53kI	GAGCTC	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	252
FaiI	YATR	1 cut(s)	235
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
Fnu4HI	GCNGC	2 cut(s)	118, 141
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	2 cut(s)	118, 141
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	2 cut(s)	118, 141
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	8
HgaI	GACGC	2 cut(s)	146, 197
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	138
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HphI	GGTGA	1 cut(s)	115
Hpy188I	TCNGA	5 cut(s)	179, 186, 213, 311, 331
Hpy188III	TCNNGA	3 cut(s)	48, 257, 298
Hpy99I	CGWCG	3 cut(s)	113, 140, 331
HpyAV	CCTTC	2 cut(s)	111, 145
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	1 cut(s)	43
HpyF3I	CTNAG	2 cut(s)	164, 212
HpySE526I	ACGT	1 cut(s)	337
Hsp92I	GRCGYC	1 cut(s)	138
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	6 cut(s)	66, 112, 174, 181, 225, 300
LguI	GCTCTTC	2 cut(s)	84, 278
LmnI	GCTCC	2 cut(s)	205, 247
LpnPI	CCDG	1 cut(s)	214
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	6 cut(s)	68, 114, 176, 183, 227, 302
MboI	GATC	6 cut(s)	66, 112, 174, 181, 225, 300
MboII	GAAGA	3 cut(s)	71, 74, 265
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	2 cut(s)	252, 273
MluCI	AATT	2 cut(s)	57, 332
MmeI	TCCRAC	2 cut(s)	289, 309
MvnI	CGCG	3 cut(s)	135, 266, 299
NdeII	GATC	6 cut(s)	66, 112, 174, 181, 225, 300
NmeAIII	GCCGAG	1 cut(s)	70
NruI	TCGCGA	1 cut(s)	299
PciSI	GCTCTTC	2 cut(s)	84, 278
PkrI	GCNGC	2 cut(s)	119, 142
Ple19I	CGATCG	2 cut(s)	115, 303
Psp124BI	GAGCTC	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	181
PvuI	CGATCG	2 cut(s)	115, 303
RgaI	GCGATCGC	1 cut(s)	303
RruI	TCGCGA	1 cut(s)	299
SacI	GAGCTC	1 cut(s)	252
SapI	GCTCTTC	2 cut(s)	84, 278
SatI	GCNGC	2 cut(s)	118, 141
Sau3AI	GATC	6 cut(s)	66, 112, 174, 181, 225, 300
SduI	GDGCHC	2 cut(s)	252, 273
SetI	ASST	7 cut(s)	40, 103, 198, 252, 264, 325, 340
SfaAI	GCGATCGC	1 cut(s)	303
SfcI	CTRYAG	1 cut(s)	144
SgfI	GCGATCGC	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	2 cut(s)	57, 332
SsiI	CCGC	5 cut(s)	118, 133, 141, 266, 285
SstI	GAGCTC	1 cut(s)	252
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	3 cut(s)	47, 65, 111
TasI	AATT	2 cut(s)	57, 332
TauI	GCSGC	2 cut(s)	120, 143
TspGWI	ACGGA	2 cut(s)	97, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.