RLG00000033412

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006218
Physical Location & Seq
Reverse (-)
26878043 .. 26878430
388 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033412

Sequence Viewer

Length: 312 bp
ATGTACGAGACCGCTGGTGGACCTACGCCAGACAGCTTCCGATCCTTGGACCGTGAGATAGCTTATCAGTTCTTGATCTTGGGGAGAAGAAGAAGAAGAACCGCATATCACTCCCACAATGAAGAAGAAGAAGAAGAGATGGAGAAGCCGCTAAGGAGAGAGATCGGAGATCTGAAAACGGAGGTTGTGAGGGAGCATCTGAGGAGCAAGAGGATCAGGCTCTGTGGATTGATGGAGCTCTTTCTTGAGGTTGCGGTGCTTTTCGTTCTTTGTGGTTTCTTGTTCACGATCAATAAATGGGTGGTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

12.23

Weight (kDa)

6.84

Isoelectric Point (pI)

81.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 12, 102, 149, 254
AclWI GGATC 2 cut(s) 36, 221
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 46
AluBI AGCT 3 cut(s) 36, 62, 238
AluI AGCT 3 cut(s) 36, 62, 238
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 2 cut(s) 36, 221
AlwNI CAGNNNCTG 1 cut(s) 222
AspS9I GGNCC 2 cut(s) 20, 49
AvaII GGWCC 2 cut(s) 20, 49
BanII GRGCYC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 240
BccI CCATC 2 cut(s) 133, 226
BcoDI GTCTC 1 cut(s) 2
BglII AGATCT 1 cut(s) 169
BisI GCNGC 1 cut(s) 149
BlsI GCNGC 1 cut(s) 150
Bme18I GGWCC 2 cut(s) 20, 49
BmgT120I GGNCC 2 cut(s) 20, 49
BmsI GCATC 1 cut(s) 205
Bpu10I CCTNAGC 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 266
BsaI GGTCTC 1 cut(s) 2
BsaJI CCNNGG 1 cut(s) 45
Bsc4I CCNNNNNNNGG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 191
BseRI GAGGAG 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 2
Bso31I GGTCTC 1 cut(s) 2
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 6 cut(s) 41, 75, 162, 169, 213, 288
BspACI CCGC 4 cut(s) 12, 102, 149, 254
BspCNI CTCAG 1 cut(s) 192
BspPI GGATC 2 cut(s) 36, 221
BspTNI GGTCTC 1 cut(s) 2
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 6 cut(s) 41, 75, 162, 169, 213, 288
BssT1I CCWWGG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 129
BstDEI CTNAG 2 cut(s) 152, 200
BstKTI GATC 6 cut(s) 44, 78, 165, 172, 216, 291
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 6 cut(s) 41, 75, 162, 169, 213, 288
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
CaiI CAGNNNCTG 1 cut(s) 222
Cfr13I GGNCC 2 cut(s) 20, 49
Csp6I GTAC 1 cut(s) 4
CviJI RGCY 5 cut(s) 36, 62, 148, 220, 238
CviKI_1 RGCY 5 cut(s) 36, 62, 148, 220, 238
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 152, 200
DpnI GATC 6 cut(s) 43, 77, 164, 171, 215, 290
DpnII GATC 6 cut(s) 41, 75, 162, 169, 213, 288
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Ecl136II GAGCTC 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 2
Eco47I GGWCC 2 cut(s) 20, 49
Eco53kI GAGCTC 1 cut(s) 238
EcoICRI GAGCTC 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 45
FaiI YATR 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 149
GluI GCNGC 1 cut(s) 149
Hpy166II GTNNAC 2 cut(s) 20, 285
Hpy188I TCNGA 4 cut(s) 41, 167, 174, 201
Hpy188III TCNNGA 4 cut(s) 73, 245, 286, 309
Hpy8I GTNNAC 2 cut(s) 20, 285
HpyCH4III ACNGT 1 cut(s) 53
HpyF3I CTNAG 2 cut(s) 152, 200
Kzo9I GATC 6 cut(s) 41, 75, 162, 169, 213, 288
LmnI GCTCC 3 cut(s) 193, 204, 235
LpnPI CCDG 2 cut(s) 42, 202
LweI GCATC 1 cut(s) 205
MalI GATC 6 cut(s) 43, 77, 164, 171, 215, 290
MboI GATC 6 cut(s) 41, 75, 162, 169, 213, 288
MboII GAAGA 9 cut(s) 99, 102, 105, 108, 134, 137, 140, 143, 146
MflI RGATCY 1 cut(s) 169
MhlI GDGCHC 1 cut(s) 240
MnlI CCTC 5 cut(s) 175, 183, 195, 204, 241
MspA1I CMGCKG 1 cut(s) 14
NdeII GATC 6 cut(s) 41, 75, 162, 169, 213, 288
PkrI GCNGC 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 240
PspPI GGNCC 2 cut(s) 20, 49
PstNI CAGNNNCTG 1 cut(s) 222
PsuI RGATCY 1 cut(s) 169
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SacI GAGCTC 1 cut(s) 240
SatI GCNGC 1 cut(s) 149
Sau3AI GATC 6 cut(s) 41, 75, 162, 169, 213, 288
Sau96I GGNCC 2 cut(s) 20, 49
SduI GDGCHC 1 cut(s) 240
SetI ASST 6 cut(s) 25, 38, 64, 186, 240, 252
SfaNI GCATC 1 cut(s) 205
SinI GGWCC 2 cut(s) 20, 49
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
SsiI CCGC 4 cut(s) 12, 102, 149, 254
SstI GAGCTC 1 cut(s) 240
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 53
TauI GCSGC 1 cut(s) 151
TspDTI ATGAA 1 cut(s) 135
TspGWI ACGGA 1 cut(s) 194
VpaK11BI GGWCC 2 cut(s) 20, 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.