Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007259

Physical Location & Seq

Genomic Coordinates Forward (+)

29564241 .. 29566812

Gene Structure 2572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G78590.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCGATTAGGAAGCTTTTGCTTCTTTTGAAACCGATTGATCCGTACCCATTCCTTCAAACAGAAGGTGCATCGCTCATCAAAAATCCTCAGGTTCTTCAATATCTAGAAAGCAGGTGCAAAGTACACAAGAATGCTATCAAGTTTTGTCAGGAAATACTAAGTAAGAAGCCTGTTGAGTGGAAACCCATTTCACGTAACGACTTATCGCATCCCATTCGTGATGTTGATATGGTCATCACCGTGGGTGGAGACGGTACCCTCTTGCATGCCAGTCATTTCATTGATGACTCTGTTCCGGTTCTAGGAGTCAATTCTGACCCAACACAAGCTCACGAGGTCGAAGAACTGAGCGATCAGTTTGACGCTAGTAGAAGTACTGGTCATCTTTGTGCTGCAACTGTCGAGAATTTTGAACAGGTGCTGGATGACATTTTGTTTGGCAGAGTGGTTCCTGCAAAAGTATCGAGAATATCATTGAAGTTAAATTCAGAAACTCTTCTTTCACATGCACTTAATGACATTTTGATCGCACAGCCATGCCCTGCTGCGGTTTCAAGGTTCTCTTTCAAGATTAAGAACAAAGATGGTGCGAGCAGTCCAAAGACAGTGAACTGCCGCTCAAGCGGTCTAAGAATCTGCACAGCTGCTGGTTCAACTGCAGCAATGCAGTCAGCAGGTGGGTTCGTGATGCCAATGTTGTCTCGTGATCTACAGTTCATGGTTAGAGAGCCAATATCTCCTGGTTCAACCGCTTCGTTAATGCATTCGACCTTCAAACCAGACCAATTCATGGACGTTAACTGGTATTCAGACCACGGGACTATCTACATCGATGGTTGTCAGGTTCAACACAGCGTGCAGCTCGGAGATACAATCGAGATATCATCGGATGCGCCAGTCTTAAACGTTTTCTTGTCACACGGCATATCTCAGATCAGATCAAGGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003951 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006741 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0042736 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

NAD_kinase

Protein Analysis

317

Amino Acids

34.83

Weight (kDa)

6.41

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_kinase	PF01513	70 - 105	1e-08	ATP-NAD kinase N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78590 AT1G78590
fragaria_vesca	FvH4_3g17730 FvH4_3g17730
malus_domestica	MD03G1247500.v1.1 MD03G1248900.v1.1 MD11G1270000.v1.1 MD11G1270100.v1.1
prunus_persica	Prupe.4G156300_v2.0.a1 Prupe.4G156300_v2.0.a1 Prupe.4G156300_v2.0.a1 Prupe.4G156300_v2.0.a1 Prupe.4G156400_v2.0.a1
pyrus_communis	pycom11g23850
rosa_chinensis	RchiOBHm_Chr5g0029501 RchiOBHm_Chr5g0029511
rosa_laevigata	RLG00000033174
rosa_multiflora	Rmu_sc0004181.1_g000011
rosa_roxburghii	Rroxscaffold_1G00050460
rosa_rugosa	Rorug05G0114300
rosa_samantha	Rh5AG206500 Rh5BG205200 Rh5CG227200 Rh5DG208800
rosa_wichuraiana	Rw5G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	105, 668
Acc36I	ACCTGC	2 cut(s)	105, 668
Acc65I	GGTACC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	257
AccB7I	CCANNNNNTGG	1 cut(s)	793
AccBSI	CCGCTC	1 cut(s)	621
AciI	CCGC	4 cut(s)	551, 619, 627, 753
AclI	AACGTT	1 cut(s)	909
AclWI	GGATC	1 cut(s)	35
AcsI	RAATTY	2 cut(s)	409, 487
AdeI	CACNNNGTG	1 cut(s)	859
AfaI	GTAC	5 cut(s)	47, 126, 259, 379, 950
AfiI	CCNNNNNNNGG	3 cut(s)	305, 550, 793
AjnI	CCWGG	1 cut(s)	742
AluBI	AGCT	4 cut(s)	16, 332, 647, 865
AluI	AGCT	4 cut(s)	16, 332, 647, 865
Alw26I	GTCTC	2 cut(s)	246, 708
AlwI	GGATC	1 cut(s)	35
AlwNI	CAGNNNCTG	2 cut(s)	424, 650
ApeKI	GCWGC	5 cut(s)	395, 548, 647, 662, 862
ApoI	RAATTY	2 cut(s)	409, 487
ArsI	GACNNNNNNTTYG	2 cut(s)	422, 454
Asp700I	GAANNNNTTC	1 cut(s)	498
Asp718I	GGTACC	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	898
AsuHPI	GGTGA	1 cut(s)	232
AxyI	CCTNAGG	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	257
BauI	CACGAG	2 cut(s)	335, 705
BbvI	GCAGC	5 cut(s)	382, 535, 634, 674, 874
BccI	CCATC	2 cut(s)	581, 830
BceAI	ACGGC	1 cut(s)	940
BcgI	CGANNNNNNTGC	4 cut(s)	200, 234, 447, 481
BciT130I	CCWGG	1 cut(s)	744
BcoDI	GTCTC	2 cut(s)	246, 708
BfaI	CTAG	4 cut(s)	107, 305, 369, 952
BfmI	CTRYAG	2 cut(s)	660, 713
BfuAI	ACCTGC	2 cut(s)	105, 668
BisI	GCNGC	6 cut(s)	396, 549, 619, 648, 663, 863
BlsI	GCNGC	6 cut(s)	397, 550, 620, 649, 664, 864
BmcAI	AGTACT	1 cut(s)	379
Bme1390I	CCNGG	1 cut(s)	744
BmiI	GGNNCC	2 cut(s)	259, 453
BmrFI	CCNGG	1 cut(s)	744
BmsI	GCATC	4 cut(s)	80, 220, 681, 883
BpuEI	CTTGAG	1 cut(s)	607
Bsa29I	ATCGAT	1 cut(s)	834
BsaAI	YACGTR	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	243, 817
BsaWI	WCCGGW	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	3 cut(s)	305, 550, 793
Bse1I	ACTGG	4 cut(s)	273, 385, 809, 899
Bse21I	CCTNAGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	672
BseBI	CCWGG	1 cut(s)	744
BseCI	ATCGAT	1 cut(s)	834
BseDI	CCNNGG	2 cut(s)	243, 817
BseGI	GGATG	3 cut(s)	211, 433, 898
BseLI	CCNNNNNNNGG	3 cut(s)	305, 550, 793
BseMI	GCAATG	1 cut(s)	672
BseMII	CTCAG	3 cut(s)	104, 341, 947
BseNI	ACTGG	4 cut(s)	273, 385, 809, 899
BseXI	GCAGC	5 cut(s)	382, 535, 634, 674, 874
BsgI	GTGCAG	2 cut(s)	625, 881
BshNI	GGYRCC	1 cut(s)	257
BshVI	ATCGAT	1 cut(s)	834
BsiSI	CCGG	1 cut(s)	299
BslFI	GGGAC	1 cut(s)	835
BslI	CCNNNNNNNGG	3 cut(s)	305, 550, 793
BsmAI	GTCTC	2 cut(s)	246, 708
BsmBI	CGTCTC	1 cut(s)	246
BsmFI	GGGAC	1 cut(s)	835
BsmI	GAATGC	2 cut(s)	139, 766
Bsp143I	GATC	6 cut(s)	40, 355, 528, 709, 936, 941
BspACI	CCGC	4 cut(s)	551, 619, 627, 753
BspCNI	CTCAG	3 cut(s)	103, 342, 946
BspDI	ATCGAT	1 cut(s)	834
BspLI	GGNNCC	2 cut(s)	259, 453
BspMAI	CTGCAG	1 cut(s)	664
BspMI	ACCTGC	2 cut(s)	105, 668
BspPI	GGATC	1 cut(s)	35
BspT107I	GGYRCC	1 cut(s)	257
BsrBI	CCGCTC	1 cut(s)	621
BsrDI	GCAATG	1 cut(s)	672
BsrI	ACTGG	4 cut(s)	273, 385, 809, 899
BssECI	CCNNGG	2 cut(s)	243, 817
BssMI	GATC	6 cut(s)	40, 355, 528, 709, 936, 941
BssSI	CACGAG	2 cut(s)	335, 705
Bst2BI	CACGAG	2 cut(s)	335, 705
Bst2UI	CCWGG	1 cut(s)	744
Bst4CI	ACNGT	5 cut(s)	244, 257, 403, 610, 717
Bst6I	CTCTTC	1 cut(s)	504
BstBAI	YACGTR	1 cut(s)	197
BstC8I	GCNNGC	3 cut(s)	270, 595, 860
BstDEI	CTNAG	5 cut(s)	90, 161, 350, 632, 933
BstDSI	CCRYGG	2 cut(s)	243, 817
BstF5I	GGATG	3 cut(s)	211, 433, 898
BstHHI	GCGC	1 cut(s)	898
BstKTI	GATC	6 cut(s)	43, 358, 531, 712, 939, 944
BstMAI	GTCTC	2 cut(s)	246, 708
BstMBI	GATC	6 cut(s)	40, 355, 528, 709, 936, 941
BstMWI	GCNNNNNNNGC	1 cut(s)	624
BstNI	CCWGG	1 cut(s)	744
BstNSI	RCATGY	2 cut(s)	272, 512
BstSCI	CCNGG	1 cut(s)	742
BstSFI	CTRYAG	2 cut(s)	660, 713
BstV1I	GCAGC	5 cut(s)	382, 535, 634, 674, 874
Bsu15I	ATCGAT	1 cut(s)	834
Bsu36I	CCTNAGG	1 cut(s)	90
BsuTUI	ATCGAT	1 cut(s)	834
BtgI	CCRYGG	2 cut(s)	243, 817
BtgZI	GCGATG	1 cut(s)	57
BtsCI	GGATG	3 cut(s)	211, 433, 898
BtsIMutI	CAGTG	1 cut(s)	615
BveI	ACCTGC	2 cut(s)	105, 668
Cac8I	GCNNGC	3 cut(s)	270, 595, 860
CaiI	CAGNNNCTG	2 cut(s)	424, 650
CfoI	GCGC	1 cut(s)	898
ClaI	ATCGAT	1 cut(s)	834
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	5 cut(s)	46, 125, 258, 378, 949
CviAII	CATG	5 cut(s)	269, 509, 540, 721, 793
CviJI	RGCY	7 cut(s)	16, 172, 332, 538, 647, 733, 865
CviKI_1	RGCY	7 cut(s)	16, 172, 332, 538, 647, 733, 865
CviQI	GTAC	5 cut(s)	46, 125, 258, 378, 949
DdeI	CTNAG	5 cut(s)	90, 161, 350, 632, 933
DpnI	GATC	6 cut(s)	42, 357, 530, 711, 938, 943
DpnII	GATC	6 cut(s)	40, 355, 528, 709, 936, 941
DraIII	CACNNNGTG	1 cut(s)	859
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
Eco32I	GATATC	1 cut(s)	885
Eco81I	CCTNAGG	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	742
EcoRV	GATATC	1 cut(s)	885
EcoT22I	ATGCAT	1 cut(s)	768
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	5 cut(s)	272, 512, 543, 724, 796
FaiI	YATR	7 cut(s)	233, 270, 510, 541, 722, 794, 929
FalI	AAGNNNNNCTT	2 cut(s)	550, 582
FaqI	GGGAC	1 cut(s)	835
FatI	CATG	5 cut(s)	268, 508, 539, 720, 792
Fnu4HI	GCNGC	6 cut(s)	396, 549, 619, 648, 663, 863
FokI	GGATG	3 cut(s)	198, 440, 905
Fsp4HI	GCNGC	6 cut(s)	396, 549, 619, 648, 663, 863
FspBI	CTAG	4 cut(s)	107, 305, 369, 952
GlaI	GCGC	1 cut(s)	897
GluI	GCNGC	6 cut(s)	396, 549, 619, 648, 663, 863
HapII	CCGG	1 cut(s)	299
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	1 cut(s)	898
Hin1II	CATG	5 cut(s)	272, 512, 543, 724, 796
Hin6I	GCGC	1 cut(s)	896
HinP1I	GCGC	1 cut(s)	896
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	3 cut(s)	290, 309, 636
HpaI	GTTAAC	1 cut(s)	802
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	3 cut(s)	127, 613, 802
Hpy188I	TCNGA	7 cut(s)	319, 493, 814, 869, 892, 936, 941
Hpy8I	GTNNAC	3 cut(s)	127, 613, 802
HpyAV	CCTTC	3 cut(s)	59, 65, 784
HpyCH4III	ACNGT	5 cut(s)	244, 257, 403, 610, 717
HpyCH4IV	ACGT	3 cut(s)	196, 798, 909
HpyF10VI	GCNNNNNNNGC	1 cut(s)	624
HpyF3I	CTNAG	5 cut(s)	90, 161, 350, 632, 933
HpySE526I	ACGT	3 cut(s)	196, 798, 909
Hsp92II	CATG	5 cut(s)	272, 512, 543, 724, 796
HspAI	GCGC	1 cut(s)	896
KpnI	GGTACC	1 cut(s)	261
KspAI	GTTAAC	1 cut(s)	802
Kzo9I	GATC	6 cut(s)	40, 355, 528, 709, 936, 941
Lsp1109I	GCAGC	5 cut(s)	382, 535, 634, 674, 874
LweI	GCATC	4 cut(s)	80, 220, 681, 883
MaeI	CTAG	4 cut(s)	107, 305, 369, 952
MaeII	ACGT	3 cut(s)	196, 798, 909
MaeIII	GTNAC	2 cut(s)	197, 918
MalI	GATC	6 cut(s)	42, 357, 530, 711, 938, 943
MbiI	CCGCTC	1 cut(s)	621
MboI	GATC	6 cut(s)	40, 355, 528, 709, 936, 941
MboII	GAAGA	3 cut(s)	89, 356, 491
MluCI	AATT	4 cut(s)	313, 409, 487, 788
MlyI	GAGTC	2 cut(s)	284, 318
MnlI	CCTC	3 cut(s)	99, 272, 331
Mph1103I	ATGCAT	1 cut(s)	768
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	6 cut(s)	485, 516, 576, 761, 801, 905
MslI	CAYNNNNRTG	4 cut(s)	132, 242, 390, 538
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	1 cut(s)	299
MspR9I	CCNGG	1 cut(s)	744
Mva1269I	GAATGC	2 cut(s)	139, 766
MvaI	CCWGG	1 cut(s)	744
MwoI	GCNNNNNNNGC	1 cut(s)	624
NdeII	GATC	6 cut(s)	40, 355, 528, 709, 936, 941
NlaIII	CATG	5 cut(s)	272, 512, 543, 724, 796
NlaIV	GGNNCC	2 cut(s)	259, 453
NmuCI	GTSAC	1 cut(s)	918
NsiI	ATGCAT	1 cut(s)	768
NspI	RCATGY	2 cut(s)	272, 512
PaeI	GCATGC	1 cut(s)	272
PaqCI	CACCTGC	2 cut(s)	105, 668
PctI	GAATGC	2 cut(s)	139, 766
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	1 cut(s)	636
PflMI	CCANNNNNTGG	1 cut(s)	793
PkrI	GCNGC	6 cut(s)	397, 550, 620, 649, 664, 864
PleI	GAGTC	2 cut(s)	284, 317
PpsI	GAGTC	2 cut(s)	284, 317
Ppu21I	YACGTR	1 cut(s)	197
Psp1406I	AACGTT	1 cut(s)	909
Psp6I	CCWGG	1 cut(s)	742
PspGI	CCWGG	1 cut(s)	742
PspN4I	GGNNCC	2 cut(s)	259, 453
PstI	CTGCAG	1 cut(s)	664
PstNI	CAGNNNCTG	2 cut(s)	424, 650
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	5 cut(s)	47, 126, 259, 379, 950
RsaNI	GTAC	5 cut(s)	46, 125, 258, 378, 949
RseI	CAYNNNNRTG	4 cut(s)	132, 242, 390, 538
SaqAI	TTAA	6 cut(s)	485, 516, 576, 761, 801, 905
SatI	GCNGC	6 cut(s)	396, 549, 619, 648, 663, 863
Sau3AI	GATC	6 cut(s)	40, 355, 528, 709, 936, 941
ScaI	AGTACT	1 cut(s)	379
SchI	GAGTC	2 cut(s)	284, 318
ScrFI	CCNGG	1 cut(s)	744
SfaNI	GCATC	4 cut(s)	80, 220, 681, 883
SfcI	CTRYAG	2 cut(s)	660, 713
SmiMI	CAYNNNNRTG	4 cut(s)	132, 242, 390, 538
SmlI	CTYRAG	1 cut(s)	622
SmoI	CTYRAG	1 cut(s)	622
SphI	GCATGC	1 cut(s)	272
Sse9I	AATT	4 cut(s)	313, 409, 487, 788
SsiI	CCGC	4 cut(s)	551, 619, 627, 753
SspMI	CTAG	4 cut(s)	107, 305, 369, 952
StyD4I	CCNGG	1 cut(s)	742
TaaI	ACNGT	5 cut(s)	244, 257, 403, 610, 717
TaiI	ACGT	3 cut(s)	199, 801, 912
TaqI	TCGA	6 cut(s)	342, 405, 467, 770, 834, 879
TasI	AATT	4 cut(s)	313, 409, 487, 788
TatI	WGTACW	2 cut(s)	124, 377
TauI	GCSGC	1 cut(s)	621
TfiI	GAWTC	1 cut(s)	636
Tru1I	TTAA	6 cut(s)	485, 516, 576, 761, 801, 905
Tru9I	TTAA	6 cut(s)	485, 516, 576, 761, 801, 905
TscAI	CASTG	1 cut(s)	615
TseFI	GTSAC	1 cut(s)	918
TseI	GCWGC	5 cut(s)	395, 548, 647, 662, 862
Tsp45I	GTSAC	1 cut(s)	918
TspDTI	ATGAA	3 cut(s)	271, 709, 781
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	615
Van91I	CCANNNNNTGG	1 cut(s)	793
XapI	RAATTY	2 cut(s)	409, 487
XbaI	TCTAGA	1 cut(s)	106
XceI	RCATGY	2 cut(s)	272, 512
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	4 cut(s)	107, 305, 369, 952
ZrmI	AGTACT	1 cut(s)	379
Zsp2I	ATGCAT	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.