RchiOBHm_Chr5g0029501

NADH kinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0007259
Physical Location & Seq
Forward (+)
23136129 .. 23138029
1901 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30888

Sequence Viewer

Length: 612 bp
ATGGCGAGGAGGAGATTGTTGGTGCTGCTAAAACCGTTCGACGTTTACCCAGCTTCCCAATCCGACGGCCTGTCTCGCATCACCAGCCTCCAGCTAAAGCACTTGGACAATAGGCGAAAGGTGCACAAGGATGCAATAAACTTTTGTCAGAATATTTTGCGGCACAAGCCTGTTGAGTGGAAAGCTCTACTGCGTAACGATATAAGGCAGCCCATCCATGATGTGGACCTTGTTATTACAGTTGGTGGTGATGGCACCTTACTACATGCTAGCCATTATATTGATGACTCTGTTCCAGTTCTAGGAGTGAATTCTGACCCTACCCGACCTGAAGAGGTGTTAAGGCACAGCAATGTGTATGATGCGACTAGAAGCACAGGCTATCTTTGTGCTGCAACTGTGCAAAGCTTAGTTAAGTCTTTTCGTTATGAACTTATGAGGTTGCTCTGCACAACCTCAAGTCAGACCATTTATCTGTTTTTCGAGTTATGGAATCGATGCTTTGTGAAAAATCAGTGTTCTTCAGCCCAGGGCAGACCTTCCATTTTGCTTGCAAATTTTAGAACTAATCTTTTGATAATTACTCTTTCCAGATACTGGACAACATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00760 ko01100 map00760 map01100
Pfam Domains
Protein Families
NAD_kinase

Protein Analysis

203

Amino Acids

23.29

Weight (kDa)

9.56

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_kinase PF01513 68 - 104 1.3e-09 ATP-NAD kinase N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 254
AccB7I CCANNNNNTGG 2 cut(s) 223, 597
AciI CCGC 1 cut(s) 160
AcsI RAATTY 2 cut(s) 310, 556
AcuI CTGAAG 2 cut(s) 351, 507
AfiI CCNNNNNNNGG 3 cut(s) 223, 302, 597
AhdI GACNNNNNGTC 1 cut(s) 70
AjnI CCWGG 1 cut(s) 528
AluBI AGCT 4 cut(s) 53, 94, 185, 408
AluI AGCT 4 cut(s) 53, 94, 185, 408
Alw21I GWGCWC 1 cut(s) 126
Alw26I GTCTC 1 cut(s) 78
Alw44I GTGCAC 1 cut(s) 122
AlwNI CAGNNNCTG 1 cut(s) 597
AoxI GGCC 1 cut(s) 67
ApaLI GTGCAC 1 cut(s) 122
ApeKI GCWGC 3 cut(s) 25, 208, 392
ApoI RAATTY 2 cut(s) 310, 556
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 2 cut(s) 73, 260
AsuNHI GCTAGC 1 cut(s) 269
AvaII GGWCC 1 cut(s) 226
BaeGI GKGCMC 1 cut(s) 126
BanI GGYRCC 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 126
BbvI GCAGC 3 cut(s) 12, 220, 379
BccI CCATC 2 cut(s) 221, 245
BceAI ACGGC 1 cut(s) 82
BciT130I CCWGG 1 cut(s) 530
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 3 cut(s) 270, 302, 369
BisI GCNGC 4 cut(s) 26, 161, 209, 393
BlsI GCNGC 4 cut(s) 27, 162, 210, 394
Bme1390I CCNGG 1 cut(s) 530
Bme18I GGWCC 1 cut(s) 226
BmeRI GACNNNNNGTC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 530
BmsI GCATC 4 cut(s) 87, 121, 352, 488
BmtI GCTAGC 1 cut(s) 273
BpmI CTGGAG 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 442
Bsa29I ATCGAT 1 cut(s) 496
BsaJI CCNNGG 2 cut(s) 528, 529
Bsc4I CCNNNNNNNGG 3 cut(s) 223, 302, 597
Bse1I ACTGG 2 cut(s) 296, 602
Bse3DI GCAATG 1 cut(s) 358
BseBI CCWGG 1 cut(s) 530
BseCI ATCGAT 1 cut(s) 496
BseDI CCNNGG 2 cut(s) 528, 529
BseGI GGATG 2 cut(s) 136, 213
BseLI CCNNNNNNNGG 3 cut(s) 223, 302, 597
BseMI GCAATG 1 cut(s) 358
BseNI ACTGG 2 cut(s) 296, 602
BseRI GAGGAG 2 cut(s) 22, 25
BseSI GKGCMC 1 cut(s) 126
BseXI GCAGC 3 cut(s) 12, 220, 379
BseYI CCCAGC 1 cut(s) 49
BsgI GTGCAG 1 cut(s) 433
BshFI GGCC 1 cut(s) 69
BshNI GGYRCC 1 cut(s) 254
BshVI ATCGAT 1 cut(s) 496
BsiHKAI GWGCWC 1 cut(s) 126
BslI CCNNNNNNNGG 3 cut(s) 223, 302, 597
BsmAI GTCTC 1 cut(s) 78
BsnI GGCC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 126
BspACI CCGC 1 cut(s) 160
BspANI GGCC 1 cut(s) 69
BspDI ATCGAT 1 cut(s) 496
BspLI GGNNCC 1 cut(s) 256
BspOI GCTAGC 1 cut(s) 273
BspT107I GGYRCC 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 358
BsrI ACTGG 2 cut(s) 296, 602
BssECI CCNNGG 2 cut(s) 528, 529
Bst2UI CCWGG 1 cut(s) 530
Bst4CI ACNGT 3 cut(s) 36, 241, 400
Bst6I CTCTTC 1 cut(s) 327
BstC8I GCNNGC 2 cut(s) 271, 552
BstDEI CTNAG 1 cut(s) 409
BstF5I GGATG 2 cut(s) 136, 213
BstMAI GTCTC 1 cut(s) 78
BstMWI GCNNNNNNNGC 4 cut(s) 75, 84, 121, 166
BstNI CCWGG 1 cut(s) 530
BstNSI RCATGY 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 528
BstSLI GKGCMC 1 cut(s) 126
BstV1I GCAGC 3 cut(s) 12, 220, 379
Bsu15I ATCGAT 1 cut(s) 496
BsuRI GGCC 1 cut(s) 69
BsuTUI ATCGAT 1 cut(s) 496
BtsCI GGATG 2 cut(s) 136, 213
BtsIMutI CAGTG 1 cut(s) 521
Cac8I GCNNGC 2 cut(s) 271, 552
CaiI CAGNNNCTG 1 cut(s) 597
Cfr13I GGNCC 1 cut(s) 226
ClaI ATCGAT 1 cut(s) 496
CviAII CATG 2 cut(s) 218, 266
DdeI CTNAG 1 cut(s) 409
DriI GACNNNNNGTC 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 327
Eam1105I GACNNNNNGTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 226
Eco57I CTGAAG 2 cut(s) 351, 507
EcoRI GAATTC 1 cut(s) 310
EcoRII CCWGG 1 cut(s) 528
FaeI CATG 2 cut(s) 221, 269
FaiI YATR 9 cut(s) 203, 219, 267, 279, 360, 429, 437, 490, 610
FatI CATG 2 cut(s) 217, 265
Fnu4HI GCNGC 4 cut(s) 26, 161, 209, 393
FokI GGATG 2 cut(s) 143, 200
Fsp4HI GCNGC 4 cut(s) 26, 161, 209, 393
FspBI CTAG 3 cut(s) 270, 302, 369
GluI GCNGC 4 cut(s) 26, 161, 209, 393
GsaI CCCAGC 1 cut(s) 53
GsuI CTGGAG 1 cut(s) 74
HaeIII GGCC 1 cut(s) 69
Hin1II CATG 2 cut(s) 221, 269
HindIII AAGCTT 1 cut(s) 406
HinfI GANTC 2 cut(s) 287, 493
HphI GGTGA 2 cut(s) 73, 260
Hpy166II GTNNAC 3 cut(s) 46, 124, 226
Hpy188I TCNGA 4 cut(s) 64, 150, 316, 465
Hpy188III TCNNGA 1 cut(s) 591
Hpy8I GTNNAC 3 cut(s) 46, 124, 226
Hpy99I CGWCG 2 cut(s) 44, 68
HpyAV CCTTC 1 cut(s) 549
HpyCH4III ACNGT 3 cut(s) 36, 241, 400
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 6 cut(s) 124, 134, 395, 403, 450, 554
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 84, 121, 166
HpyF3I CTNAG 1 cut(s) 409
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 2 cut(s) 221, 269
Lsp1109I GCAGC 3 cut(s) 12, 220, 379
LweI GCATC 4 cut(s) 87, 121, 352, 488
MaeI CTAG 3 cut(s) 270, 302, 369
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 194
MboII GAAGA 2 cut(s) 344, 513
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 3 cut(s) 310, 556, 579
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 5 cut(s) 3, 98, 328, 432, 466
MseI TTAA 2 cut(s) 341, 414
MslI CAYNNNNRTG 2 cut(s) 129, 351
MspR9I CCNGG 1 cut(s) 530
MvaI CCWGG 1 cut(s) 530
MwoI GCNNNNNNNGC 4 cut(s) 75, 84, 121, 166
NheI GCTAGC 1 cut(s) 269
NlaIII CATG 2 cut(s) 221, 269
NlaIV GGNNCC 1 cut(s) 256
NspI RCATGY 1 cut(s) 269
PasI CCCWGGG 1 cut(s) 529
PfeI GAWTC 1 cut(s) 493
PflMI CCANNNNNTGG 2 cut(s) 223, 597
PkrI GCNGC 4 cut(s) 27, 162, 210, 394
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 528
PspFI CCCAGC 1 cut(s) 49
PspGI CCWGG 1 cut(s) 528
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 597
RseI CAYNNNNRTG 2 cut(s) 129, 351
SaqAI TTAA 2 cut(s) 341, 414
SatI GCNGC 4 cut(s) 26, 161, 209, 393
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 530
SduI GDGCHC 1 cut(s) 126
SfaNI GCATC 4 cut(s) 87, 121, 352, 488
SinI GGWCC 1 cut(s) 226
SmiMI CAYNNNNRTG 2 cut(s) 129, 351
SmlI CTYRAG 1 cut(s) 457
SmoI CTYRAG 1 cut(s) 457
Sse9I AATT 3 cut(s) 310, 556, 579
SsiI CCGC 1 cut(s) 160
SspI AATATT 1 cut(s) 154
SspMI CTAG 3 cut(s) 270, 302, 369
StyD4I CCNGG 1 cut(s) 528
TaaI ACNGT 3 cut(s) 36, 241, 400
TaiI ACGT 1 cut(s) 45
TaqI TCGA 3 cut(s) 39, 483, 496
TasI AATT 3 cut(s) 310, 556, 579
TauI GCSGC 1 cut(s) 163
TfiI GAWTC 1 cut(s) 493
Tru1I TTAA 2 cut(s) 341, 414
Tru9I TTAA 2 cut(s) 341, 414
TscAI CASTG 1 cut(s) 521
TseI GCWGC 3 cut(s) 25, 208, 392
TspDTI ATGAA 1 cut(s) 444
TspRI CASTG 1 cut(s) 521
Van91I CCANNNNNTGG 2 cut(s) 223, 597
VneI GTGCAC 1 cut(s) 122
VpaK11BI GGWCC 1 cut(s) 226
XapI RAATTY 2 cut(s) 310, 556
XceI RCATGY 1 cut(s) 269
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XspI CTAG 3 cut(s) 270, 302, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.