AT1G78620

Integral membrane protein DUF92

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008669
Physical Location & Seq
Reverse (-)
29573657 .. 29575801
2145 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78620.1

Sequence Viewer

Length: 1002 bp
ATGGCAACGATTTCGTCAACTCTACTCTTAAATTCTTCTAGATCAGCTTTACCACTAAGATTCCCAAAATTCTCGGGATTTTCTTCTTCCTCTCCATTCGCTAGATCTTACAGATTTGGACGACGTAATCTGGAACCACTTTCCAACGGAATGCTTTCGTCGGGAAGTAGAGCCGACGGTGCTACGGCGGCGGCTGCATCGATGGAAGGAGTGATGACGGAGGCGATGAAACTGATTCAATCGGCGTCACCAACTTGGAAATCAGCTGTGGCTAACAATTTATTGATTTTTGTTCTCGGTTCACCGCTTCTTGTTACCGGATTGTCCGCTTCTGGGATCGCCGCCGCGTTTTTGCTTGGTACTTTAACTTGGAGAGCTTATGGCTCTGCTGGTTTCCTCTTAGTCGCTGCTTACTTCGTCATAGGAACAGCGGCAACGAAGGTTAAAATGACGCAAAAGGAAGCACAAGGTGTGGCCGAAAAGAGAAAGGGTAGAAGAGGACCACGCAGTGTGATTGGTTCAAGTGCTGCTGGTTGTGTCTGTGCTTTTCTTTCAATATATCAAGTGGGAGGAGCAGCTTTTTCCCAGCTTTTCCGGCTTGGTTTTGTTTCCAGTTTCTGCACTAAAGTATCTGACACTGTCTCGAGCGAGATAGGCAAAGCTTATGGAAAAACAACGTATTTAGCTACGACATTTAAGATTGTACCAAGAGGAACAGAGGGAGCTATGAGTCTTGAAGGAACATTGGCTGGACTTTTAGCATCATTTTTTCTTGCATCTGTTGGCTGCTTCCTGGGTCAGATAACTCCTCCAGAAGCAGCTGTATGTGTACTAGCTTCCCAGATTGCCAATCTTGGAGAGAGCATAATAGGTGCTTCTTTTCAAGACAAAGAAGGATTCAAATGGCTAAACAATGATGTAGTCAACGTGATCAACATAAGCTTGGGAAGCATTGTGGCGATTTTGATGCAACAGTTTATACTCCAGAACTGGGTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF92

Protein Analysis

333

Amino Acids

34.87

Weight (kDa)

9.84

Isoelectric Point (pI)

35.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF92 PF01940 97 - 316 1.1e-56 Integral membrane protein DUF92
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 347
AciI CCGC 7 cut(s) 188, 191, 305, 327, 342, 345, 431
AclWI GGATC 1 cut(s) 344
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 2 cut(s) 31, 68
AcyI GRCGYC 1 cut(s) 245
AdeI CACNNNGTG 2 cut(s) 470, 509
AfaI GTAC 3 cut(s) 361, 705, 831
AfiI CCNNNNNNNGG 2 cut(s) 333, 991
AgsI TTSAA 6 cut(s) 239, 522, 555, 737, 884, 901
AjnI CCWGG 1 cut(s) 792
Alw26I GTCTC 1 cut(s) 646
AlwI GGATC 1 cut(s) 344
AlwNI CAGNNNCTG 1 cut(s) 618
Ama87I CYCGRG 2 cut(s) 73, 643
AoxI GGCC 1 cut(s) 474
ApeKI GCWGC 6 cut(s) 194, 407, 527, 575, 786, 818
ApoI RAATTY 2 cut(s) 31, 68
Asp700I GAANNNNTTC 1 cut(s) 154
AspS9I GGNCC 1 cut(s) 500
AsuHPI GGTGA 2 cut(s) 240, 294
AvaI CYCGRG 2 cut(s) 73, 643
AvaII GGWCC 1 cut(s) 500
BaeI ACNNNNGTAYC 2 cut(s) 612, 645
BbvI GCAGC 6 cut(s) 181, 394, 514, 587, 773, 830
BccI CCATC 1 cut(s) 196
BceAI ACGGC 1 cut(s) 201
BcgI CGANNNNNNTGC 3 cut(s) 28, 949, 983
BciT130I CCWGG 1 cut(s) 794
BclI TGATCA 1 cut(s) 930
BcoDI GTCTC 1 cut(s) 646
BfaI CTAG 3 cut(s) 39, 102, 833
BglII AGATCT 1 cut(s) 104
Bme1390I CCNGG 1 cut(s) 794
Bme18I GGWCC 1 cut(s) 500
BmeT110I CYCGRG 2 cut(s) 73, 643
BmgT120I GGNCC 1 cut(s) 500
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 794
BmrI ACTGGG 1 cut(s) 1000
BmsI GCATC 4 cut(s) 206, 770, 785, 957
BmuI ACTGGG 1 cut(s) 1000
BpmI CTGGAG 2 cut(s) 795, 968
Bsa29I ATCGAT 1 cut(s) 200
BsaHI GRCGYC 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 793
BsaWI WCCGGW 1 cut(s) 317
Bsc4I CCNNNNNNNGG 2 cut(s) 333, 991
Bse1I ACTGG 2 cut(s) 612, 995
BseBI CCWGG 1 cut(s) 794
BseCI ATCGAT 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 793
BseLI CCNNNNNNNGG 2 cut(s) 333, 991
BseNI ACTGG 2 cut(s) 612, 995
BseRI GAGGAG 2 cut(s) 585, 798
BseXI GCAGC 6 cut(s) 181, 394, 514, 587, 773, 830
BseYI CCCAGC 1 cut(s) 585
BsgI GTGCAG 1 cut(s) 604
Bsh1236I CGCG 1 cut(s) 347
BshFI GGCC 1 cut(s) 476
BshVI ATCGAT 1 cut(s) 200
BsiHKCI CYCGRG 2 cut(s) 73, 643
BsiSI CCGG 2 cut(s) 318, 595
BslI CCNNNNNNNGG 2 cut(s) 333, 991
BsmAI GTCTC 1 cut(s) 646
BsmI GAATGC 1 cut(s) 156
BsnI GGCC 1 cut(s) 476
BsoBI CYCGRG 2 cut(s) 73, 643
Bsp143I GATC 4 cut(s) 41, 104, 336, 930
BspACI CCGC 7 cut(s) 188, 191, 305, 327, 342, 345, 431
BspANI GGCC 1 cut(s) 476
BspDI ATCGAT 1 cut(s) 200
BspFNI CGCG 1 cut(s) 347
BspLI GGNNCC 1 cut(s) 135
BspPI GGATC 1 cut(s) 344
BsrI ACTGG 2 cut(s) 612, 995
BssECI CCNNGG 1 cut(s) 793
BssMI GATC 4 cut(s) 41, 104, 336, 930
BssNI GRCGYC 1 cut(s) 245
Bst2UI CCWGG 1 cut(s) 794
Bst4CI ACNGT 3 cut(s) 179, 640, 975
Bst6I CTCTTC 1 cut(s) 490
BstACI GRCGYC 1 cut(s) 245
BstDEI CTNAG 2 cut(s) 56, 400
BstFNI CGCG 1 cut(s) 347
BstKTI GATC 4 cut(s) 44, 107, 339, 933
BstMAI GTCTC 1 cut(s) 646
BstMBI GATC 4 cut(s) 41, 104, 336, 930
BstMWI GCNNNNNNNGC 6 cut(s) 179, 188, 194, 595, 654, 948
BstNI CCWGG 1 cut(s) 794
BstSCI CCNGG 1 cut(s) 792
BstUI CGCG 1 cut(s) 347
BstV1I GCAGC 6 cut(s) 181, 394, 514, 587, 773, 830
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
Bsu15I ATCGAT 1 cut(s) 200
BsuRI GGCC 1 cut(s) 476
BsuTUI ATCGAT 1 cut(s) 200
BtgZI GCGATG 1 cut(s) 239
BtsI GCAGTG 1 cut(s) 514
BtsIMutI CAGTG 2 cut(s) 514, 636
CaiI CAGNNNCTG 1 cut(s) 618
Cfr13I GGNCC 1 cut(s) 500
ClaI ATCGAT 1 cut(s) 200
CseI GACGC 2 cut(s) 234, 460
Csp6I GTAC 3 cut(s) 360, 704, 830
CviQI GTAC 3 cut(s) 360, 704, 830
DdeI CTNAG 2 cut(s) 56, 400
DpnI GATC 4 cut(s) 43, 106, 338, 932
DpnII GATC 4 cut(s) 41, 104, 336, 930
DraIII CACNNNGTG 2 cut(s) 470, 509
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 1 cut(s) 490
EarI CTCTTC 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 500
Eco88I CYCGRG 2 cut(s) 73, 643
EcoRII CCWGG 1 cut(s) 792
FaiI YATR 9 cut(s) 381, 422, 559, 666, 728, 826, 866, 938, 980
FbaI TGATCA 1 cut(s) 930
FspBI CTAG 3 cut(s) 39, 102, 833
GsaI CCCAGC 1 cut(s) 589
GsuI CTGGAG 2 cut(s) 795, 968
HaeIII GGCC 1 cut(s) 476
HapII CCGG 2 cut(s) 318, 595
HgaI GACGC 2 cut(s) 234, 460
Hin1I GRCGYC 1 cut(s) 245
HincII GTYRAC 2 cut(s) 18, 925
HindII GTYRAC 2 cut(s) 18, 925
HindIII AAGCTT 2 cut(s) 660, 940
HinfI GANTC 4 cut(s) 60, 235, 730, 897
HpaII CCGG 2 cut(s) 318, 595
HphI GGTGA 2 cut(s) 240, 294
Hpy166II GTNNAC 4 cut(s) 18, 302, 830, 925
Hpy188I TCNGA 2 cut(s) 634, 801
Hpy188III TCNNGA 9 cut(s) 39, 75, 131, 162, 643, 734, 812, 884, 985
Hpy8I GTNNAC 4 cut(s) 18, 302, 830, 925
Hpy99I CGWCG 3 cut(s) 126, 163, 179
HpyAV CCTTC 4 cut(s) 200, 433, 731, 887
HpyCH4III ACNGT 3 cut(s) 179, 640, 975
HpyCH4IV ACGT 3 cut(s) 124, 677, 927
HpyCH4V TGCA 4 cut(s) 197, 621, 776, 970
HpyF10VI GCNNNNNNNGC 6 cut(s) 179, 188, 194, 595, 654, 948
HpyF3I CTNAG 2 cut(s) 56, 400
HpySE526I ACGT 3 cut(s) 124, 677, 927
Hsp92I GRCGYC 1 cut(s) 245
Ksp22I TGATCA 1 cut(s) 930
Kzo9I GATC 4 cut(s) 41, 104, 336, 930
LmnI GCTCC 2 cut(s) 572, 722
Lsp1109I GCAGC 6 cut(s) 181, 394, 514, 587, 773, 830
LweI GCATC 4 cut(s) 206, 770, 785, 957
MaeI CTAG 3 cut(s) 39, 102, 833
MaeII ACGT 3 cut(s) 124, 677, 927
MaeIII GTNAC 2 cut(s) 246, 313
MalI GATC 4 cut(s) 43, 106, 338, 932
MboI GATC 4 cut(s) 41, 104, 336, 930
MboII GAAGA 4 cut(s) 27, 75, 78, 507
MflI RGATCY 1 cut(s) 104
MluCI AATT 3 cut(s) 31, 68, 277
MlyI GAGTC 1 cut(s) 739
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 8 cut(s) 100, 214, 407, 491, 563, 704, 712, 819
MroXI GAANNNNTTC 1 cut(s) 154
MseI TTAA 4 cut(s) 29, 365, 444, 696
MspA1I CMGCKG 3 cut(s) 266, 431, 821
MspI CCGG 2 cut(s) 318, 595
MspR9I CCNGG 1 cut(s) 794
Mva1269I GAATGC 1 cut(s) 156
MvaI CCWGG 1 cut(s) 794
MvnI CGCG 1 cut(s) 347
MwoI GCNNNNNNNGC 6 cut(s) 179, 188, 194, 595, 654, 948
NdeII GATC 4 cut(s) 41, 104, 336, 930
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 1 cut(s) 246
PaeR7I CTCGAG 1 cut(s) 643
PctI GAATGC 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 154
PfeI GAWTC 3 cut(s) 60, 235, 897
PflFI GACNNNGTC 1 cut(s) 638
PleI GAGTC 1 cut(s) 738
PpsI GAGTC 1 cut(s) 738
Psp6I CCWGG 1 cut(s) 792
PspFI CCCAGC 1 cut(s) 585
PspGI CCWGG 1 cut(s) 792
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 1 cut(s) 500
PstNI CAGNNNCTG 1 cut(s) 618
PsuI RGATCY 1 cut(s) 104
PsyI GACNNNGTC 1 cut(s) 638
PvuII CAGCTG 2 cut(s) 266, 821
RsaI GTAC 3 cut(s) 361, 705, 831
RsaNI GTAC 3 cut(s) 360, 704, 830
SaqAI TTAA 4 cut(s) 29, 365, 444, 696
Sau3AI GATC 4 cut(s) 41, 104, 336, 930
Sau96I GGNCC 1 cut(s) 500
SchI GAGTC 1 cut(s) 739
ScrFI CCNGG 1 cut(s) 794
SfaNI GCATC 4 cut(s) 206, 770, 785, 957
Sfr274I CTCGAG 1 cut(s) 643
SinI GGWCC 1 cut(s) 500
SlaI CTCGAG 1 cut(s) 643
SmlI CTYRAG 1 cut(s) 643
SmoI CTYRAG 1 cut(s) 643
Sse9I AATT 3 cut(s) 31, 68, 277
SsiI CCGC 7 cut(s) 188, 191, 305, 327, 342, 345, 431
SspMI CTAG 3 cut(s) 39, 102, 833
StyD4I CCNGG 1 cut(s) 792
TaaI ACNGT 3 cut(s) 179, 640, 975
TaiI ACGT 3 cut(s) 127, 680, 930
TaqI TCGA 2 cut(s) 200, 644
TasI AATT 3 cut(s) 31, 68, 277
TatI WGTACW 1 cut(s) 829
TauI GCSGC 5 cut(s) 191, 194, 344, 347, 434
TfiI GAWTC 3 cut(s) 60, 235, 897
Tru1I TTAA 4 cut(s) 29, 365, 444, 696
Tru9I TTAA 4 cut(s) 29, 365, 444, 696
TscAI CASTG 2 cut(s) 514, 643
TseFI GTSAC 1 cut(s) 246
TseI GCWGC 6 cut(s) 194, 407, 527, 575, 786, 818
Tsp45I GTSAC 1 cut(s) 246
TspDTI ATGAA 1 cut(s) 242
TspGWI ACGGA 2 cut(s) 162, 233
TspRI CASTG 2 cut(s) 514, 643
Tth111I GACNNNGTC 1 cut(s) 638
VpaK11BI GGWCC 1 cut(s) 500
XapI RAATTY 2 cut(s) 31, 68
XbaI TCTAGA 1 cut(s) 38
XhoI CTCGAG 1 cut(s) 643
XmnI GAANNNNTTC 1 cut(s) 154
XspI CTAG 3 cut(s) 39, 102, 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.