Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008669

Physical Location & Seq

Genomic Coordinates Reverse (-)

20249767 .. 20255140

Gene Structure 5374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g19660.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGAACAGGCCTCCCGCAGCCATTGTGCAGAGTGCTGTGTCCCAGGCAATGAGCTTGATCCAATCGTCGCCTCCGACCTGGCAGTCCGCCGTCCTCAGCAACATCCTCATCTTTCTGCTGGGTTCTCCAATCCTGGTCTCCGGACTCTCTGCCTCTGGCATTGGAGCTGCTTTCTTGCTCGGTACTCTCACTTGGCGCGCTTTTGGGTCTTCTGGGTTTCTCCTGGTGGCCACGTACTTCGTCATCGGGACGGCAGTGACAAAGGTGAGAATGAAACAGAAGGAGGCTGAGGGGGTAGCCGAGAAGAGGAAAGGACGGAGAGGCCCTGGCAGTGTCATTGGATCCAGTGCTGCTGGCTGTGTTTGTGCTTTCCTCACAATACTTGGAGCAGGAGGAAGCGGATATTCTCGGCTTTGGCAACTAGGGTTTGTTGCCAGCTTCTGCACTAAGTTAAGTGATACTGTCTCGAGTGAGATGGGAAAGGCATATGGCAAAACCACGTACTTAGTTACAACATTGAAGGTAGTTCCAAGGGGAACAGAGGGGGCTATGAGTGTTGAGGGAACCTTTTCTGGACTTTTGGCTGCTATCGTTCTTGCATTTGTTGGTTGCGCCATGGGTGAGATAAGTGCACCTGAAGCAATGATATGCGTAATAGCTTCCCAAATAGCTAATCTTGGTGAGAGCATTATAGGTGCTGCTCTTCAAGAGAAGGAAGGATTTCGATGGCTCAACAACGATGCTGTGAATGTCATAAACATATCGATGGGCAGCATTTTGGCAGTCTTGATGCAGCAGGTTTTACTCCAGAACTGGAGTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF92

Protein Analysis

275

Amino Acids

28.47

Weight (kDa)

9.2

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78620 AT1G78620
fragaria_vesca	FvH4_3g17770 FvH4_3g17770 FvH4_3g17770 FvH4_3g17770 FvH4_3g17770
malus_domestica	MD03G1247900.v1.1 MD11G1269700.v1.1
prunus_persica	Prupe.4G156800_v2.0.a1 Prupe.4G156800_v2.0.a1
pyrus_communis	pycom03g19660 pycom11g23820
rosa_chinensis	RchiOBHm_Chr5g0029561
rosa_laevigata	RLG00000033179
rosa_multiflora	Rmu_sc0000210.1_g000016 Rmu_sc0001608.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050380
rosa_samantha	Rh5AG207100 Rh5BG205800 Rh5CG227900 Rh5DG209600
rosa_wichuraiana	Rw5G018840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	82
Acc36I	ACCTGC	1 cut(s)	787
AccII	CGCG	1 cut(s)	198
AccIII	TCCGGA	1 cut(s)	140
AciI	CCGC	3 cut(s)	15, 87, 399
AclWI	GGATC	3 cut(s)	52, 336, 349
AcoI	YGGCCR	1 cut(s)	228
AcuI	CTGAAG	1 cut(s)	657
AfaI	GTAC	3 cut(s)	184, 236, 503
AfiI	CCNNNNNNNGG	1 cut(s)	306
AgsI	TTSAA	2 cut(s)	520, 707
AjnI	CCWGG	5 cut(s)	42, 77, 132, 222, 325
AluBI	AGCT	5 cut(s)	54, 167, 438, 659, 671
AluI	AGCT	5 cut(s)	54, 167, 438, 659, 671
Alw21I	GWGCWC	1 cut(s)	634
Alw26I	GTCTC	2 cut(s)	142, 469
Alw44I	GTGCAC	1 cut(s)	630
AlwI	GGATC	3 cut(s)	52, 336, 349
AlwNI	CAGNNNCTG	1 cut(s)	441
Ama87I	CYCGRG	1 cut(s)	466
Aor13HI	TCCGGA	1 cut(s)	140
AoxI	GGCC	3 cut(s)	8, 228, 322
ApaLI	GTGCAC	1 cut(s)	630
ApeKI	GCWGC	7 cut(s)	17, 167, 350, 584, 698, 771, 793
Asp700I	GAANNNNTTC	2 cut(s)	568, 720
AspLEI	GCGC	3 cut(s)	198, 200, 614
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	3 cut(s)	277, 632, 692
AvaI	CYCGRG	1 cut(s)	466
BaeGI	GKGCMC	1 cut(s)	634
BalI	TGGCCA	1 cut(s)	230
BamHI	GGATCC	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	634
BbvCI	CCTCAGC	2 cut(s)	95, 288
BbvI	GCAGC	7 cut(s)	29, 154, 337, 571, 685, 783, 805
BccI	CCATC	3 cut(s)	469, 720, 760
BceAI	ACGGC	2 cut(s)	74, 267
BciT130I	CCWGG	5 cut(s)	44, 79, 134, 224, 327
BcoDI	GTCTC	2 cut(s)	142, 469
BfaI	CTAG	1 cut(s)	422
BfuAI	ACCTGC	1 cut(s)	787
BisI	GCNGC	7 cut(s)	18, 168, 351, 585, 699, 772, 794
BlsI	GCNGC	7 cut(s)	19, 169, 352, 586, 700, 773, 795
Bme1390I	CCNGG	5 cut(s)	44, 79, 134, 224, 327
BmeT110I	CYCGRG	1 cut(s)	466
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	2 cut(s)	343, 565
BmrFI	CCNGG	5 cut(s)	44, 79, 134, 224, 327
BmsI	GCATC	2 cut(s)	730, 780
BpiI	GAAGAC	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	791
Bpu10I	CCTNAGC	2 cut(s)	95, 288
Bsa29I	ATCGAT	1 cut(s)	764
BsaAI	YACGTR	2 cut(s)	234, 501
BsaI	GGTCTC	1 cut(s)	142
BsaJI	CCNNGG	4 cut(s)	42, 325, 530, 615
BsaWI	WCCGGW	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse1I	ACTGG	2 cut(s)	345, 818
Bse3DI	GCAATG	2 cut(s)	54, 648
BseAI	TCCGGA	1 cut(s)	140
BseBI	CCWGG	5 cut(s)	44, 79, 134, 224, 327
BseCI	ATCGAT	1 cut(s)	764
BseDI	CCNNGG	4 cut(s)	42, 325, 530, 615
BseGI	GGATG	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseMI	GCAATG	2 cut(s)	54, 648
BseMII	CTCAG	2 cut(s)	109, 279
BseNI	ACTGG	2 cut(s)	345, 818
BsePI	GCGCGC	1 cut(s)	196
BseSI	GKGCMC	1 cut(s)	634
BseXI	GCAGC	7 cut(s)	29, 154, 337, 571, 685, 783, 805
BseYI	CCCAGC	1 cut(s)	118
BsgI	GTGCAG	2 cut(s)	47, 427
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	3 cut(s)	10, 230, 324
BshVI	ATCGAT	1 cut(s)	764
BsiHKAI	GWGCWC	1 cut(s)	634
BsiHKCI	CYCGRG	1 cut(s)	466
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	2 cut(s)	25, 262
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	2 cut(s)	142, 469
BsmFI	GGGAC	2 cut(s)	25, 262
BsnI	GGCC	3 cut(s)	10, 230, 324
Bso31I	GGTCTC	1 cut(s)	142
BsoBI	CYCGRG	1 cut(s)	466
Bsp1286I	GDGCHC	1 cut(s)	634
Bsp13I	TCCGGA	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	57, 341
Bsp19I	CCATGG	1 cut(s)	615
BspACI	CCGC	3 cut(s)	15, 87, 399
BspANI	GGCC	3 cut(s)	10, 230, 324
BspCNI	CTCAG	2 cut(s)	108, 280
BspDI	ATCGAT	1 cut(s)	764
BspEI	TCCGGA	1 cut(s)	140
BspFNI	CGCG	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	343, 565
BspMI	ACCTGC	1 cut(s)	787
BspPI	GGATC	3 cut(s)	52, 336, 349
BspQI	GCTCTTC	1 cut(s)	708
BspTNI	GGTCTC	1 cut(s)	142
BsrDI	GCAATG	2 cut(s)	54, 648
BsrI	ACTGG	2 cut(s)	345, 818
BssECI	CCNNGG	4 cut(s)	42, 325, 530, 615
BssHII	GCGCGC	1 cut(s)	196
BssMI	GATC	2 cut(s)	57, 341
BssT1I	CCWWGG	2 cut(s)	530, 615
Bst2UI	CCWGG	5 cut(s)	44, 79, 134, 224, 327
Bst4CI	ACNGT	1 cut(s)	463
Bst6I	CTCTTC	2 cut(s)	299, 708
BstBAI	YACGTR	2 cut(s)	234, 501
BstC8I	GCNNGC	3 cut(s)	198, 355, 436
BstDEI	CTNAG	4 cut(s)	95, 288, 447, 505
BstDSI	CCRYGG	1 cut(s)	615
BstF5I	GGATG	1 cut(s)	102
BstFNI	CGCG	1 cut(s)	198
BstHHI	GCGC	3 cut(s)	198, 200, 614
BstKTI	GATC	2 cut(s)	60, 344
BstMAI	GTCTC	2 cut(s)	142, 469
BstMBI	GATC	2 cut(s)	57, 341
BstMWI	GCNNNNNNNGC	1 cut(s)	638
BstNI	CCWGG	5 cut(s)	44, 79, 134, 224, 327
BstSCI	CCNGG	5 cut(s)	42, 77, 132, 222, 325
BstSLI	GKGCMC	1 cut(s)	634
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	7 cut(s)	29, 154, 337, 571, 685, 783, 805
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
Bsu15I	ATCGAT	1 cut(s)	764
BsuRI	GGCC	3 cut(s)	10, 230, 324
BsuTUI	ATCGAT	1 cut(s)	764
BtgI	CCRYGG	1 cut(s)	615
BtsCI	GGATG	1 cut(s)	102
BtsI	GCAGTG	2 cut(s)	261, 337
BtsIMutI	CAGTG	3 cut(s)	261, 337, 352
BveI	ACCTGC	1 cut(s)	787
Cac8I	GCNNGC	3 cut(s)	198, 355, 436
CaiI	CAGNNNCTG	1 cut(s)	441
CfoI	GCGC	3 cut(s)	198, 200, 614
Cfr13I	GGNCC	1 cut(s)	323
ClaI	ATCGAT	1 cut(s)	764
Csp6I	GTAC	3 cut(s)	183, 235, 502
CviAII	CATG	1 cut(s)	616
CviQI	GTAC	3 cut(s)	183, 235, 502
DdeI	CTNAG	4 cut(s)	95, 288, 447, 505
DpnI	GATC	2 cut(s)	59, 343
DpnII	GATC	2 cut(s)	57, 341
DrdI	GACNNNNNNGTC	1 cut(s)	82
DseDI	GACNNNNNNGTC	1 cut(s)	82
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	2 cut(s)	299, 708
EarI	CTCTTC	2 cut(s)	299, 708
EciI	GGCGGA	1 cut(s)	76
Eco130I	CCWWGG	2 cut(s)	530, 615
Eco147I	AGGCCT	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	657
Eco88I	CYCGRG	1 cut(s)	466
EcoO109I	RGGNCCY	1 cut(s)	323
EcoRII	CCWGG	5 cut(s)	42, 77, 132, 222, 325
EcoT14I	CCWWGG	2 cut(s)	530, 615
ErhI	CCWWGG	2 cut(s)	530, 615
FaeI	CATG	1 cut(s)	619
FaiI	YATR	9 cut(s)	487, 489, 551, 617, 649, 692, 755, 761, 821
FaqI	GGGAC	2 cut(s)	25, 262
FatI	CATG	1 cut(s)	615
FauI	CCCGC	1 cut(s)	22
FauNDI	CATATG	1 cut(s)	487
Fnu4HI	GCNGC	7 cut(s)	18, 168, 351, 585, 699, 772, 794
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	7 cut(s)	18, 168, 351, 585, 699, 772, 794
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	3 cut(s)	197, 199, 613
GluI	GCNGC	7 cut(s)	18, 168, 351, 585, 699, 772, 794
GsaI	CCCAGC	1 cut(s)	122
GsuI	CTGGAG	1 cut(s)	791
HaeIII	GGCC	3 cut(s)	10, 230, 324
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	3 cut(s)	198, 200, 614
Hin1II	CATG	1 cut(s)	619
Hin6I	GCGC	3 cut(s)	196, 198, 612
HinP1I	GCGC	3 cut(s)	196, 198, 612
HinfI	GANTC	1 cut(s)	144
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	3 cut(s)	277, 632, 692
Hpy166II	GTNNAC	1 cut(s)	632
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	7 cut(s)	141, 247, 466, 573, 707, 787, 808
Hpy8I	GTNNAC	1 cut(s)	632
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	4 cut(s)	274, 514, 706, 710
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4IV	ACGT	2 cut(s)	233, 500
HpyCH4V	TGCA	5 cut(s)	28, 444, 599, 632, 793
HpyF10VI	GCNNNNNNNGC	1 cut(s)	638
HpyF3I	CTNAG	4 cut(s)	95, 288, 447, 505
HpySE526I	ACGT	2 cut(s)	233, 500
Hsp92II	CATG	1 cut(s)	619
HspAI	GCGC	3 cut(s)	196, 198, 612
Kpn2I	TCCGGA	1 cut(s)	140
Kzo9I	GATC	2 cut(s)	57, 341
LguI	GCTCTTC	1 cut(s)	708
LmnI	GCTCC	2 cut(s)	164, 386
Lsp1109I	GCAGC	7 cut(s)	29, 154, 337, 571, 685, 783, 805
LweI	GCATC	2 cut(s)	730, 780
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	2 cut(s)	233, 500
MaeIII	GTNAC	2 cut(s)	256, 508
MalI	GATC	2 cut(s)	59, 343
MboI	GATC	2 cut(s)	57, 341
MboII	GAAGA	3 cut(s)	201, 316, 695
MflI	RGATCY	1 cut(s)	341
MhlI	GDGCHC	1 cut(s)	634
MlsI	TGGCCA	1 cut(s)	230
MluNI	TGGCCA	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	98
Mox20I	TGGCCA	1 cut(s)	230
MroI	TCCGGA	1 cut(s)	140
MroXI	GAANNNNTTC	2 cut(s)	568, 720
MscI	TGGCCA	1 cut(s)	230
MseI	TTAA	1 cut(s)	452
MslI	CAYNNNNRTG	1 cut(s)	764
Msp20I	TGGCCA	1 cut(s)	230
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	5 cut(s)	44, 79, 134, 224, 327
MvaI	CCWGG	5 cut(s)	44, 79, 134, 224, 327
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	638
NcoI	CCATGG	1 cut(s)	615
NdeI	CATATG	1 cut(s)	487
NdeII	GATC	2 cut(s)	57, 341
NlaIII	CATG	1 cut(s)	619
NlaIV	GGNNCC	2 cut(s)	343, 565
NmeAIII	GCCGAG	2 cut(s)	325, 388
NmuCI	GTSAC	1 cut(s)	256
PaeR7I	CTCGAG	1 cut(s)	466
PauI	GCGCGC	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	10
PciSI	GCTCTTC	1 cut(s)	708
PcsI	WCGNNNNNNNCGW	1 cut(s)	71
PdmI	GAANNNNTTC	2 cut(s)	568, 720
PkrI	GCNGC	7 cut(s)	19, 169, 352, 586, 700, 773, 795
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
Ppu21I	YACGTR	2 cut(s)	234, 501
Psp6I	CCWGG	5 cut(s)	42, 77, 132, 222, 325
PspFI	CCCAGC	1 cut(s)	118
PspGI	CCWGG	5 cut(s)	42, 77, 132, 222, 325
PspN4I	GGNNCC	2 cut(s)	343, 565
PspPI	GGNCC	1 cut(s)	323
PstNI	CAGNNNCTG	1 cut(s)	441
PsuI	RGATCY	1 cut(s)	341
PteI	GCGCGC	1 cut(s)	196
RsaI	GTAC	3 cut(s)	184, 236, 503
RsaNI	GTAC	3 cut(s)	183, 235, 502
RseI	CAYNNNNRTG	1 cut(s)	764
SapI	GCTCTTC	1 cut(s)	708
SaqAI	TTAA	1 cut(s)	452
SatI	GCNGC	7 cut(s)	18, 168, 351, 585, 699, 772, 794
Sau3AI	GATC	2 cut(s)	57, 341
Sau96I	GGNCC	1 cut(s)	323
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	5 cut(s)	44, 79, 134, 224, 327
SduI	GDGCHC	1 cut(s)	634
SfaNI	GCATC	2 cut(s)	730, 780
Sfr274I	CTCGAG	1 cut(s)	466
SlaI	CTCGAG	1 cut(s)	466
SmiMI	CAYNNNNRTG	1 cut(s)	764
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
SseBI	AGGCCT	1 cut(s)	10
SsiI	CCGC	3 cut(s)	15, 87, 399
SspMI	CTAG	1 cut(s)	422
StuI	AGGCCT	1 cut(s)	10
StyD4I	CCNGG	5 cut(s)	42, 77, 132, 222, 325
StyI	CCWWGG	2 cut(s)	530, 615
TaaI	ACNGT	1 cut(s)	463
TaiI	ACGT	2 cut(s)	236, 503
TaqI	TCGA	3 cut(s)	467, 724, 764
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TscAI	CASTG	3 cut(s)	261, 337, 352
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	7 cut(s)	17, 167, 350, 584, 698, 771, 793
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	2 cut(s)	17, 287
TspGWI	ACGGA	1 cut(s)	331
TspRI	CASTG	3 cut(s)	261, 337, 352
VneI	GTGCAC	1 cut(s)	630
XhoI	CTCGAG	1 cut(s)	466
XmnI	GAANNNNTTC	2 cut(s)	568, 720
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.