FvH4_3g17770

Integral membrane protein DUF92

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008669
Physical Location & Seq
Reverse (-)
11304401 .. 11308476
4076 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g17770.t1

Sequence Viewer

Length: 996 bp
ATGGCATTGTCCACAATCTTGCACATCAAACCACCACCTCCTCCTCCATTCCCTTCACTAAAACCACACCCCTCCTCCTCCTTCCCAATTCTCCCCACCAAAACCCCAATCCCAATCCCAATCCCAATCCAAAACCCTACTAAACCCCTCAAAACCCACTTCACTATGCAGAGGCCTTCTCATGCATCCACCACTGTCCACAGTGCTGTCTCCGACGCAGTCACCCTGATCCAATCCTCCCCCGCCACGTGGCAGTCTGCAATCCTCTGCAACCTCCTGATCTTTCTTCTGGGCTCTCCGATTCTGGTTTCTGGGCTCTCCCTTTCCGGCATTGCTGCCGCATTTTTGCTCGGAACTCTCACTTGGCGCGCTTTTGGGCCTCCTGGGTTTCTCTTGGTGGCAACCTACTTCGTCATTGGCACGGCGGTGACAAAGGTGAGAATGGCACAAAAGGAGGCCGAGGGGGTAGCTGAGAAGAGGAAAGGAAGGAGAGGCCCAGGCAGTGTTATTGGATCCAGTGCTGCTGGTTGCATTTGCGCTTTTCTCACTATATTTTTAGTAGGAGGAAAGGCATATTCGCGGCTCTGGCAACTAGGGTTTGTTGCCAGTTTCTGTACTAAGTTGAGTGATACTGTATCAAGTGAGGTGGGAAAGGCATATGGAAAAACAACGTACTTAGTAACAACATTGAAGGTAGTTCCAAGGGGAACAGAGGGGGCTGTGAGTCTCGAGGGAACCCTTGCTGGACTTTTGGCATCTGTTCTTCTTGCATTTGTTGGTTGTCTCATTGGTCAGATAAATGGACCTGAAGCAGTTATATGTGTAATAGCTTCCCAAATAGCAAATGTTGGTGAGAGCATTATAGGTGCTGCTCTTCAAGACAAGGAAGGATTTCGATGGCTCAACAATGATGCCGTGAATGTTATAAACATATCAATGGGCAGCATTTTTGCCGTTCTTATGCAGCAGGCATTACTCCAAAACCTACGTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF92

Protein Analysis

332

Amino Acids

34.79

Weight (kDa)

9.67

Isoelectric Point (pI)

36.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF92 PF01940 94 - 314 3.1e-59 Integral membrane protein DUF92
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 926
AccII CGCG 2 cut(s) 369, 580
AciI CCGC 4 cut(s) 243, 339, 425, 580
AclWI GGATC 3 cut(s) 223, 507, 520
AcuI CTGAAG 1 cut(s) 828
AcvI CACGTG 1 cut(s) 249
AfaI GTAC 2 cut(s) 616, 674
AfiI CCNNNNNNNGG 1 cut(s) 249
AgsI TTSAA 2 cut(s) 691, 878
AjnI CCWGG 2 cut(s) 382, 496
AjuI GAANNNNNNNTTGG 2 cut(s) 346, 378
AleI CACNNNNGTG 1 cut(s) 425
AluBI AGCT 2 cut(s) 470, 830
AluI AGCT 2 cut(s) 470, 830
Alw26I GTCTC 3 cut(s) 214, 731, 788
AlwI GGATC 3 cut(s) 223, 507, 520
AlwNI CAGNNNCTG 1 cut(s) 612
Ama87I CYCGRG 1 cut(s) 728
AoxI GGCC 4 cut(s) 173, 377, 456, 493
ApeKI GCWGC 5 cut(s) 335, 521, 869, 942, 964
Asp700I GAANNNNTTC 1 cut(s) 891
AspLEI GCGC 3 cut(s) 369, 371, 539
AspS9I GGNCC 3 cut(s) 377, 494, 803
AsuHPI GGTGA 4 cut(s) 214, 439, 448, 863
AvaI CYCGRG 1 cut(s) 728
AvaII GGWCC 1 cut(s) 803
BamHI GGATCC 1 cut(s) 512
BanII GRGCYC 2 cut(s) 296, 318
BbrPI CACGTG 1 cut(s) 249
BbvI GCAGC 5 cut(s) 322, 508, 856, 954, 976
BccI CCATC 1 cut(s) 891
BceAI ACGGC 3 cut(s) 438, 899, 938
BciT130I CCWGG 2 cut(s) 384, 498
BcoDI GTCTC 3 cut(s) 214, 731, 788
BfaI CTAG 1 cut(s) 593
BisI GCNGC 7 cut(s) 336, 339, 522, 581, 870, 943, 965
BlsI GCNGC 7 cut(s) 337, 340, 523, 582, 871, 944, 966
Bme1390I CCNGG 2 cut(s) 384, 498
Bme18I GGWCC 1 cut(s) 803
BmeT110I CYCGRG 1 cut(s) 728
BmgT120I GGNCC 3 cut(s) 377, 494, 803
BmiI GGNNCC 2 cut(s) 514, 736
BmrFI CCNGG 2 cut(s) 384, 498
BmsI GCATC 3 cut(s) 194, 764, 901
BplI GAGNNNNNCTC 2 cut(s) 163, 195
BsaAI YACGTR 2 cut(s) 249, 989
BsaJI CCNNGG 4 cut(s) 383, 459, 496, 701
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse1I ACTGG 2 cut(s) 516, 606
Bse3DI GCAATG 1 cut(s) 330
BseBI CCWGG 2 cut(s) 384, 498
BseDI CCNNGG 4 cut(s) 383, 459, 496, 701
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 2 cut(s) 516, 606
BsePI GCGCGC 1 cut(s) 367
BseRI GAGGAG 4 cut(s) 30, 33, 64, 67
BseXI GCAGC 5 cut(s) 322, 508, 856, 954, 976
Bsh1236I CGCG 2 cut(s) 369, 580
BshFI GGCC 4 cut(s) 175, 379, 458, 495
BsiHKCI CYCGRG 1 cut(s) 728
BsiSI CCGG 1 cut(s) 327
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 3 cut(s) 214, 731, 788
BsnI GGCC 4 cut(s) 175, 379, 458, 495
BsoBI CYCGRG 1 cut(s) 728
Bsp1286I GDGCHC 2 cut(s) 296, 318
Bsp143I GATC 3 cut(s) 228, 279, 512
BspACI CCGC 4 cut(s) 243, 339, 425, 580
BspANI GGCC 4 cut(s) 175, 379, 458, 495
BspCNI CTCAG 1 cut(s) 463
BspFNI CGCG 2 cut(s) 369, 580
BspLI GGNNCC 2 cut(s) 514, 736
BspPI GGATC 3 cut(s) 223, 507, 520
BspQI GCTCTTC 1 cut(s) 879
BsrDI GCAATG 1 cut(s) 330
BsrI ACTGG 2 cut(s) 516, 606
BssECI CCNNGG 4 cut(s) 383, 459, 496, 701
BssHII GCGCGC 1 cut(s) 367
BssMI GATC 3 cut(s) 228, 279, 512
BssT1I CCWWGG 1 cut(s) 701
Bst2UI CCWGG 2 cut(s) 384, 498
Bst4CI ACNGT 3 cut(s) 196, 203, 634
Bst6I CTCTTC 2 cut(s) 470, 879
BstBAI YACGTR 2 cut(s) 249, 989
BstC8I GCNNGC 2 cut(s) 369, 969
BstDEI CTNAG 3 cut(s) 471, 618, 676
BstF5I GGATG 1 cut(s) 185
BstFNI CGCG 2 cut(s) 369, 580
BstHHI GCGC 3 cut(s) 369, 371, 539
BstKTI GATC 3 cut(s) 231, 282, 515
BstMAI GTCTC 3 cut(s) 214, 731, 788
BstMBI GATC 3 cut(s) 228, 279, 512
BstMWI GCNNNNNNNGC 1 cut(s) 586
BstNI CCWGG 2 cut(s) 384, 498
BstSCI CCNGG 2 cut(s) 382, 496
BstSNI TACGTA 1 cut(s) 989
BstUI CGCG 2 cut(s) 369, 580
BstV1I GCAGC 5 cut(s) 322, 508, 856, 954, 976
BstX2I RGATCY 1 cut(s) 512
BstYI RGATCY 1 cut(s) 512
BsuRI GGCC 4 cut(s) 175, 379, 458, 495
BtsCI GGATG 1 cut(s) 185
BtsI GCAGTG 1 cut(s) 508
BtsIMutI CAGTG 4 cut(s) 192, 208, 508, 523
Cac8I GCNNGC 2 cut(s) 369, 969
CaiI CAGNNNCTG 1 cut(s) 612
CfoI GCGC 3 cut(s) 369, 371, 539
Cfr13I GGNCC 3 cut(s) 377, 494, 803
CseI GACGC 1 cut(s) 224
Csp6I GTAC 2 cut(s) 615, 673
CspCI CAANNNNNGTGG 2 cut(s) 627, 662
CviAII CATG 1 cut(s) 182
CviQI GTAC 2 cut(s) 615, 673
DdeI CTNAG 3 cut(s) 471, 618, 676
DpnI GATC 3 cut(s) 230, 281, 514
DpnII GATC 3 cut(s) 228, 279, 512
Eam1104I CTCTTC 2 cut(s) 470, 879
EarI CTCTTC 2 cut(s) 470, 879
Eco105I TACGTA 1 cut(s) 989
Eco130I CCWWGG 1 cut(s) 701
Eco147I AGGCCT 1 cut(s) 175
Eco24I GRGCYC 2 cut(s) 296, 318
Eco47I GGWCC 1 cut(s) 803
Eco57I CTGAAG 1 cut(s) 828
Eco72I CACGTG 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 728
EcoRII CCWGG 2 cut(s) 382, 496
EcoT14I CCWWGG 1 cut(s) 701
EcoT22I ATGCAT 1 cut(s) 187
EcoT38I GRGCYC 2 cut(s) 296, 318
ErhI CCWWGG 1 cut(s) 701
FaeI CATG 1 cut(s) 185
FatI CATG 1 cut(s) 181
FauI CCCGC 1 cut(s) 250
FauNDI CATATG 1 cut(s) 658
Fnu4HI GCNGC 7 cut(s) 336, 339, 522, 581, 870, 943, 965
FokI GGATG 1 cut(s) 172
FriOI GRGCYC 2 cut(s) 296, 318
Fsp4HI GCNGC 7 cut(s) 336, 339, 522, 581, 870, 943, 965
FspBI CTAG 1 cut(s) 593
GlaI GCGC 3 cut(s) 368, 370, 538
GluI GCNGC 7 cut(s) 336, 339, 522, 581, 870, 943, 965
HaeIII GGCC 4 cut(s) 175, 379, 458, 495
HapII CCGG 1 cut(s) 327
HgaI GACGC 1 cut(s) 224
HhaI GCGC 3 cut(s) 369, 371, 539
Hin1II CATG 1 cut(s) 185
Hin6I GCGC 3 cut(s) 367, 369, 537
HinP1I GCGC 3 cut(s) 367, 369, 537
HinfI GANTC 2 cut(s) 301, 724
HpaII CCGG 1 cut(s) 327
HphI GGTGA 4 cut(s) 214, 439, 448, 863
Hpy166II GTNNAC 2 cut(s) 12, 199
Hpy188I TCNGA 4 cut(s) 214, 300, 353, 795
Hpy188III TCNNGA 3 cut(s) 277, 728, 878
Hpy8I GTNNAC 2 cut(s) 12, 199
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 6 cut(s) 63, 91, 186, 480, 685, 881
HpyCH4III ACNGT 3 cut(s) 196, 203, 634
HpyCH4IV ACGT 3 cut(s) 248, 671, 988
HpyCH4V TGCA 8 cut(s) 22, 169, 185, 260, 270, 531, 770, 964
HpyF10VI GCNNNNNNNGC 1 cut(s) 586
HpyF3I CTNAG 3 cut(s) 471, 618, 676
HpySE526I ACGT 3 cut(s) 248, 671, 988
Hsp92II CATG 1 cut(s) 185
HspAI GCGC 3 cut(s) 367, 369, 537
Kzo9I GATC 3 cut(s) 228, 279, 512
LguI GCTCTTC 1 cut(s) 879
Lsp1109I GCAGC 5 cut(s) 322, 508, 856, 954, 976
LweI GCATC 3 cut(s) 194, 764, 901
MaeI CTAG 1 cut(s) 593
MaeII ACGT 3 cut(s) 248, 671, 988
MaeIII GTNAC 3 cut(s) 220, 427, 679
MalI GATC 3 cut(s) 230, 281, 514
MboI GATC 3 cut(s) 228, 279, 512
MboII GAAGA 4 cut(s) 278, 487, 755, 866
MflI RGATCY 1 cut(s) 512
MhlI GDGCHC 2 cut(s) 296, 318
MluCI AATT 1 cut(s) 87
MlyI GAGTC 1 cut(s) 733
MmeI TCCRAC 1 cut(s) 237
Mph1103I ATGCAT 1 cut(s) 187
MroXI GAANNNNTTC 1 cut(s) 891
MslI CAYNNNNRTG 2 cut(s) 425, 935
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 2 cut(s) 384, 498
MvaI CCWGG 2 cut(s) 384, 498
MvnI CGCG 2 cut(s) 369, 580
MwoI GCNNNNNNNGC 1 cut(s) 586
NdeI CATATG 1 cut(s) 658
NdeII GATC 3 cut(s) 228, 279, 512
NlaIII CATG 1 cut(s) 185
NlaIV GGNNCC 2 cut(s) 514, 736
NmeAIII GCCGAG 1 cut(s) 484
NmuCI GTSAC 2 cut(s) 220, 427
NsiI ATGCAT 1 cut(s) 187
OliI CACNNNNGTG 1 cut(s) 425
PaeR7I CTCGAG 1 cut(s) 728
PauI GCGCGC 1 cut(s) 367
PceI AGGCCT 1 cut(s) 175
PciSI GCTCTTC 1 cut(s) 879
PdmI GAANNNNTTC 1 cut(s) 891
PfeI GAWTC 1 cut(s) 301
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 7 cut(s) 337, 340, 523, 582, 871, 944, 966
PleI GAGTC 1 cut(s) 732
PmaCI CACGTG 1 cut(s) 249
PmlI CACGTG 1 cut(s) 249
PpsI GAGTC 1 cut(s) 732
Ppu21I YACGTR 2 cut(s) 249, 989
PsiI TTATAA 1 cut(s) 926
Psp6I CCWGG 2 cut(s) 382, 496
PspCI CACGTG 1 cut(s) 249
PspGI CCWGG 2 cut(s) 382, 496
PspN4I GGNNCC 2 cut(s) 514, 736
PspPI GGNCC 3 cut(s) 377, 494, 803
PstNI CAGNNNCTG 1 cut(s) 612
PsuI RGATCY 1 cut(s) 512
PsyI GACNNNGTC 1 cut(s) 218
PteI GCGCGC 1 cut(s) 367
RsaI GTAC 2 cut(s) 616, 674
RsaNI GTAC 2 cut(s) 615, 673
RseI CAYNNNNRTG 2 cut(s) 425, 935
SapI GCTCTTC 1 cut(s) 879
SatI GCNGC 7 cut(s) 336, 339, 522, 581, 870, 943, 965
Sau3AI GATC 3 cut(s) 228, 279, 512
Sau96I GGNCC 3 cut(s) 377, 494, 803
SchI GAGTC 1 cut(s) 733
ScrFI CCNGG 2 cut(s) 384, 498
SduI GDGCHC 2 cut(s) 296, 318
SfaNI GCATC 3 cut(s) 194, 764, 901
Sfr274I CTCGAG 1 cut(s) 728
SinI GGWCC 1 cut(s) 803
SlaI CTCGAG 1 cut(s) 728
SmiMI CAYNNNNRTG 2 cut(s) 425, 935
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
SnaBI TACGTA 1 cut(s) 989
Sse9I AATT 1 cut(s) 87
SseBI AGGCCT 1 cut(s) 175
SsiI CCGC 4 cut(s) 243, 339, 425, 580
SspMI CTAG 1 cut(s) 593
StuI AGGCCT 1 cut(s) 175
StyD4I CCNGG 2 cut(s) 382, 496
StyI CCWWGG 1 cut(s) 701
TaaI ACNGT 3 cut(s) 196, 203, 634
TaiI ACGT 3 cut(s) 251, 674, 991
TaqI TCGA 2 cut(s) 729, 895
TasI AATT 1 cut(s) 87
TatI WGTACW 1 cut(s) 614
TauI GCSGC 2 cut(s) 341, 583
TfiI GAWTC 1 cut(s) 301
TscAI CASTG 4 cut(s) 199, 208, 508, 523
TseFI GTSAC 2 cut(s) 220, 427
TseI GCWGC 5 cut(s) 335, 521, 869, 942, 964
Tsp45I GTSAC 2 cut(s) 220, 427
TspRI CASTG 4 cut(s) 199, 208, 508, 523
Tth111I GACNNNGTC 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 803
XhoI CTCGAG 1 cut(s) 728
XmnI GAANNNNTTC 1 cut(s) 891
XspI CTAG 1 cut(s) 593
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.