MD11G1269700.v1.1

Integral membrane protein DUF92

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0008669
Physical Location & Seq
Forward (+)
38516643 .. 38520831
4189 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1269700.v1.1.491

Sequence Viewer

Length: 1071 bp
ATGGATTTTCCCCAAATACTTTACTTTTTTCTTCACACACTCACACCCACATTCAAAATACACAAAAAAATGGCATTGTCAGCAGCTCCCCTCCTCCTGCACATCAAACCCCCTCCAATTCCTTCCTTATTCCAATCCCAATCCCAATCCCAATCCCACCGCGTCTCCTCCTCCTCCCTCCCCATCCTCCGCACAAAATTCCTAATCCCAACCCACCCTCGCCACAGCAATCCCCCCAAACAAACAATGAACGGGCCTCCCGCAGCCAGTGTGCAGAGTGCTGTGTCCCAGGCAATGAGCCTGATCCAGTCGTCGCCTCCGACCTGGCAGTCCTCCGTCCTCAGCAACCTCCTGATCTTCCTGCTGGGTTCTCCAATTCTGGTCTCCGGACTCTCTGCCTCCGGCATTGGAGCTGCTTTCTTGCTCGGTACTCTCACTTGGCGCGCTTTTGGGTCTTCTGGGTTTCTCCTGGTGGCCGCATACTTCGTCCTTGGCACGGCAGTGACAAAGGTGAGGATGAAACAAAAGGAGGCTGAAGGGGTAGCCGAGAAGAGGAAAGGAAGGAGAGGCCCTGGCAGTGTCATTGGATCCAGTGCTGCTGGTTGTGTCTGTGCTTTCCTGTCAATACTTGGAATAGGAGGAAGCAGATATTCTCGGCTTTGGCAACTAGGGTTTGTTGCCAGCTTCTGCACTAAGTTAAGTGATACTGTCTCGAGTGAGATGGGAAAGGCATATGGAAAAACAACGTACTTAGTTACAACATTGAAGGTAGTTCCAAGGGGAACAGAGGGGGCTGTGAGTGTTGAGGGAACCTTTGCTGGACTTTTGGCCGCTATCCTTCTTGCGTTTGTTGGTTGTGCCATGGGTGAGGTAAGTGCACCTGAAGCAATGATATGCGTAATAGCATCGCAAATAGCTAATCTTGGTGAGAGCATTATAGGTGCTGCTCTTCAAGACAAGGAAGGATTTAGATGGCTCAACAACGATGCTGTGAACGTCATAAACATATCGATGGGCAGCATTTTGGCAGTCTTGATGCGGCGGGTTTTGCTCCAGAACTGGAGTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF92

Protein Analysis

357

Amino Acids

37.78

Weight (kDa)

9.99

Isoelectric Point (pI)

50.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF92 PF01940 119 - 339 4e-57 Integral membrane protein DUF92
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 328
AccII CGCG 2 cut(s) 162, 444
AccIII TCCGGA 1 cut(s) 386
AciI CCGC 7 cut(s) 160, 190, 261, 477, 831, 1039, 1042
AclWI GGATC 3 cut(s) 298, 582, 595
AcoI YGGCCR 2 cut(s) 474, 828
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 2 cut(s) 555, 903
AfaI GTAC 2 cut(s) 430, 749
AfiI CCNNNNNNNGG 2 cut(s) 496, 552
AgsI TTSAA 3 cut(s) 55, 766, 953
AjnI CCWGG 4 cut(s) 288, 323, 468, 571
AleI CACNNNNGTG 1 cut(s) 500
AluBI AGCT 4 cut(s) 86, 413, 684, 917
AluI AGCT 4 cut(s) 86, 413, 684, 917
Alw21I GWGCWC 1 cut(s) 880
Alw26I GTCTC 3 cut(s) 169, 388, 715
Alw44I GTGCAC 1 cut(s) 876
AlwI GGATC 3 cut(s) 298, 582, 595
AlwNI CAGNNNCTG 1 cut(s) 687
Ama87I CYCGRG 1 cut(s) 712
Aor13HI TCCGGA 1 cut(s) 386
AoxI GGCC 4 cut(s) 254, 474, 568, 828
ApaLI GTGCAC 1 cut(s) 876
ApeKI GCWGC 6 cut(s) 83, 263, 413, 596, 944, 1017
ApoI RAATTY 1 cut(s) 197
AspLEI GCGC 2 cut(s) 444, 446
AspS9I GGNCC 2 cut(s) 254, 569
AsuHPI GGTGA 3 cut(s) 523, 878, 938
AvaI CYCGRG 1 cut(s) 712
BaeGI GKGCMC 1 cut(s) 880
BamHI GGATCC 1 cut(s) 587
BbsI GAAGAC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 880
BbvCI CCTCAGC 1 cut(s) 341
BbvI GCAGC 6 cut(s) 95, 275, 400, 583, 931, 1029
BccI CCATC 4 cut(s) 191, 715, 966, 1006
BceAI ACGGC 1 cut(s) 513
BciT130I CCWGG 4 cut(s) 290, 325, 470, 573
BcoDI GTCTC 3 cut(s) 169, 388, 715
BfaI CTAG 1 cut(s) 668
BisI GCNGC 9 cut(s) 84, 264, 414, 477, 597, 831, 945, 1018, 1040
BlsI GCNGC 9 cut(s) 85, 265, 415, 478, 598, 832, 946, 1019, 1041
Bme1390I CCNGG 4 cut(s) 290, 325, 470, 573
BmeT110I CYCGRG 1 cut(s) 712
BmgT120I GGNCC 2 cut(s) 254, 569
BmiI GGNNCC 2 cut(s) 589, 811
BmrFI CCNGG 4 cut(s) 290, 325, 470, 573
BmsI GCATC 3 cut(s) 914, 976, 1026
BpiI GAAGAC 1 cut(s) 447
BpmI CTGGAG 1 cut(s) 1037
Bpu10I CCTNAGC 1 cut(s) 341
Bsa29I ATCGAT 1 cut(s) 1010
BsaI GGTCTC 1 cut(s) 388
BsaJI CCNNGG 5 cut(s) 288, 490, 571, 776, 861
BsaWI WCCGGW 1 cut(s) 386
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 2 cut(s) 496, 552
Bse1I ACTGG 4 cut(s) 267, 307, 591, 1064
Bse3DI GCAATG 2 cut(s) 300, 894
BseAI TCCGGA 1 cut(s) 386
BseBI CCWGG 4 cut(s) 290, 325, 470, 573
BseCI ATCGAT 1 cut(s) 1010
BseDI CCNNGG 5 cut(s) 288, 490, 571, 776, 861
BseGI GGATG 2 cut(s) 183, 522
BseLI CCNNNNNNNGG 2 cut(s) 496, 552
BseMI GCAATG 2 cut(s) 300, 894
BseMII CTCAG 1 cut(s) 355
BseNI ACTGG 4 cut(s) 267, 307, 591, 1064
BsePI GCGCGC 1 cut(s) 442
BseRI GAGGAG 4 cut(s) 83, 157, 160, 163
BseSI GKGCMC 1 cut(s) 880
BseXI GCAGC 6 cut(s) 95, 275, 400, 583, 931, 1029
BseYI CCCAGC 1 cut(s) 364
BsgI GTGCAG 3 cut(s) 83, 293, 673
Bsh1236I CGCG 2 cut(s) 162, 444
BshFI GGCC 4 cut(s) 256, 476, 570, 830
BshVI ATCGAT 1 cut(s) 1010
BsiHKAI GWGCWC 1 cut(s) 880
BsiHKCI CYCGRG 1 cut(s) 712
BsiSI CCGG 2 cut(s) 387, 402
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 2 cut(s) 496, 552
BsmAI GTCTC 3 cut(s) 169, 388, 715
BsmBI CGTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 271
BsnI GGCC 4 cut(s) 256, 476, 570, 830
Bso31I GGTCTC 1 cut(s) 388
BsoBI CYCGRG 1 cut(s) 712
Bsp1286I GDGCHC 1 cut(s) 880
Bsp13I TCCGGA 1 cut(s) 386
Bsp143I GATC 3 cut(s) 303, 354, 587
Bsp19I CCATGG 1 cut(s) 861
BspACI CCGC 7 cut(s) 160, 190, 261, 477, 831, 1039, 1042
BspANI GGCC 4 cut(s) 256, 476, 570, 830
BspCNI CTCAG 1 cut(s) 354
BspDI ATCGAT 1 cut(s) 1010
BspEI TCCGGA 1 cut(s) 386
BspFNI CGCG 2 cut(s) 162, 444
BspLI GGNNCC 2 cut(s) 589, 811
BspPI GGATC 3 cut(s) 298, 582, 595
BspQI GCTCTTC 1 cut(s) 954
BspTNI GGTCTC 1 cut(s) 388
BsrDI GCAATG 2 cut(s) 300, 894
BsrI ACTGG 4 cut(s) 267, 307, 591, 1064
BssECI CCNNGG 5 cut(s) 288, 490, 571, 776, 861
BssHII GCGCGC 1 cut(s) 442
BssMI GATC 3 cut(s) 303, 354, 587
BssT1I CCWWGG 3 cut(s) 490, 776, 861
Bst2UI CCWGG 4 cut(s) 290, 325, 470, 573
Bst4CI ACNGT 1 cut(s) 709
Bst6I CTCTTC 2 cut(s) 545, 954
BstC8I GCNNGC 2 cut(s) 444, 682
BstDEI CTNAG 3 cut(s) 341, 693, 751
BstDSI CCRYGG 1 cut(s) 861
BstF5I GGATG 2 cut(s) 183, 522
BstFNI CGCG 2 cut(s) 162, 444
BstHHI GCGC 2 cut(s) 444, 446
BstKTI GATC 3 cut(s) 306, 357, 590
BstMAI GTCTC 3 cut(s) 169, 388, 715
BstMBI GATC 3 cut(s) 303, 354, 587
BstMWI GCNNNNNNNGC 3 cut(s) 80, 884, 1048
BstNI CCWGG 4 cut(s) 290, 325, 470, 573
BstSCI CCNGG 4 cut(s) 288, 323, 468, 571
BstSLI GKGCMC 1 cut(s) 880
BstUI CGCG 2 cut(s) 162, 444
BstV1I GCAGC 6 cut(s) 95, 275, 400, 583, 931, 1029
BstV2I GAAGAC 1 cut(s) 447
BstX2I RGATCY 1 cut(s) 587
BstYI RGATCY 1 cut(s) 587
Bsu15I ATCGAT 1 cut(s) 1010
BsuRI GGCC 4 cut(s) 256, 476, 570, 830
BsuTUI ATCGAT 1 cut(s) 1010
BtgI CCRYGG 1 cut(s) 861
BtgZI GCGATG 1 cut(s) 891
BtsCI GGATG 2 cut(s) 183, 522
BtsI GCAGTG 2 cut(s) 507, 583
BtsIMutI CAGTG 4 cut(s) 274, 507, 583, 598
Cac8I GCNNGC 2 cut(s) 444, 682
CaiI CAGNNNCTG 1 cut(s) 687
CfoI GCGC 2 cut(s) 444, 446
Cfr13I GGNCC 2 cut(s) 254, 569
ClaI ATCGAT 1 cut(s) 1010
CseI GACGC 1 cut(s) 151
Csp6I GTAC 2 cut(s) 429, 748
CviAII CATG 1 cut(s) 862
CviQI GTAC 2 cut(s) 429, 748
DdeI CTNAG 3 cut(s) 341, 693, 751
DpnI GATC 3 cut(s) 305, 356, 589
DpnII GATC 3 cut(s) 303, 354, 587
DrdI GACNNNNNNGTC 1 cut(s) 328
DseDI GACNNNNNNGTC 1 cut(s) 328
EaeI YGGCCR 2 cut(s) 474, 828
Eam1104I CTCTTC 2 cut(s) 545, 954
EarI CTCTTC 2 cut(s) 545, 954
Eco130I CCWWGG 3 cut(s) 490, 776, 861
Eco31I GGTCTC 1 cut(s) 388
Eco57I CTGAAG 2 cut(s) 555, 903
Eco88I CYCGRG 1 cut(s) 712
EcoO109I RGGNCCY 1 cut(s) 569
EcoRII CCWGG 4 cut(s) 288, 323, 468, 571
EcoT14I CCWWGG 3 cut(s) 490, 776, 861
ErhI CCWWGG 3 cut(s) 490, 776, 861
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 1 cut(s) 865
FaiI YATR 9 cut(s) 481, 733, 735, 863, 895, 938, 1001, 1007, 1067
FaqI GGGAC 1 cut(s) 271
FatI CATG 1 cut(s) 861
FauI CCCGC 2 cut(s) 268, 1035
FauNDI CATATG 1 cut(s) 733
Fnu4HI GCNGC 9 cut(s) 84, 264, 414, 477, 597, 831, 945, 1018, 1040
FokI GGATG 2 cut(s) 170, 529
Fsp4HI GCNGC 9 cut(s) 84, 264, 414, 477, 597, 831, 945, 1018, 1040
FspBI CTAG 1 cut(s) 668
GlaI GCGC 2 cut(s) 443, 445
GluI GCNGC 9 cut(s) 84, 264, 414, 477, 597, 831, 945, 1018, 1040
GsaI CCCAGC 1 cut(s) 368
GsuI CTGGAG 1 cut(s) 1037
HaeIII GGCC 4 cut(s) 256, 476, 570, 830
HapII CCGG 2 cut(s) 387, 402
HgaI GACGC 1 cut(s) 151
HhaI GCGC 2 cut(s) 444, 446
Hin1II CATG 1 cut(s) 865
Hin6I GCGC 2 cut(s) 442, 444
HinP1I GCGC 2 cut(s) 442, 444
HinfI GANTC 1 cut(s) 390
HpaII CCGG 2 cut(s) 387, 402
HphI GGTGA 3 cut(s) 523, 878, 938
Hpy166II GTNNAC 2 cut(s) 878, 994
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 6 cut(s) 352, 387, 712, 953, 1033, 1054
Hpy8I GTNNAC 2 cut(s) 878, 994
Hpy99I CGWCG 1 cut(s) 316
HpyAV CCTTC 6 cut(s) 132, 530, 555, 760, 848, 956
HpyCH4III ACNGT 1 cut(s) 709
HpyCH4IV ACGT 2 cut(s) 746, 996
HpyCH4V TGCA 4 cut(s) 100, 274, 690, 878
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 884, 1048
HpyF3I CTNAG 3 cut(s) 341, 693, 751
HpySE526I ACGT 2 cut(s) 746, 996
Hsp92II CATG 1 cut(s) 865
HspAI GCGC 2 cut(s) 442, 444
Kpn2I TCCGGA 1 cut(s) 386
Kzo9I GATC 3 cut(s) 303, 354, 587
LguI GCTCTTC 1 cut(s) 954
LmnI GCTCC 3 cut(s) 91, 410, 1056
Lsp1109I GCAGC 6 cut(s) 95, 275, 400, 583, 931, 1029
LweI GCATC 3 cut(s) 914, 976, 1026
MaeI CTAG 1 cut(s) 668
MaeII ACGT 2 cut(s) 746, 996
MaeIII GTNAC 2 cut(s) 502, 754
MalI GATC 3 cut(s) 305, 356, 589
MboI GATC 3 cut(s) 303, 354, 587
MboII GAAGA 5 cut(s) 23, 349, 447, 562, 941
MflI RGATCY 1 cut(s) 587
MhlI GDGCHC 1 cut(s) 880
MluCI AATT 3 cut(s) 117, 197, 375
MlyI GAGTC 1 cut(s) 384
MmeI TCCRAC 1 cut(s) 344
MroI TCCGGA 1 cut(s) 386
MseI TTAA 1 cut(s) 698
MslI CAYNNNNRTG 2 cut(s) 500, 1010
MspI CCGG 2 cut(s) 387, 402
MspR9I CCNGG 4 cut(s) 290, 325, 470, 573
MvaI CCWGG 4 cut(s) 290, 325, 470, 573
MvnI CGCG 2 cut(s) 162, 444
MwoI GCNNNNNNNGC 3 cut(s) 80, 884, 1048
NcoI CCATGG 1 cut(s) 861
NdeI CATATG 1 cut(s) 733
NdeII GATC 3 cut(s) 303, 354, 587
NlaIII CATG 1 cut(s) 865
NlaIV GGNNCC 2 cut(s) 589, 811
NmeAIII GCCGAG 2 cut(s) 571, 634
NmuCI GTSAC 1 cut(s) 502
OliI CACNNNNGTG 1 cut(s) 500
PaeR7I CTCGAG 1 cut(s) 712
PauI GCGCGC 1 cut(s) 442
PciSI GCTCTTC 1 cut(s) 954
PcsI WCGNNNNNNNCGW 1 cut(s) 317
PkrI GCNGC 9 cut(s) 85, 265, 415, 478, 598, 832, 946, 1019, 1041
PleI GAGTC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 384
Psp6I CCWGG 4 cut(s) 288, 323, 468, 571
PspFI CCCAGC 1 cut(s) 364
PspGI CCWGG 4 cut(s) 288, 323, 468, 571
PspN4I GGNNCC 2 cut(s) 589, 811
PspPI GGNCC 2 cut(s) 254, 569
PstNI CAGNNNCTG 1 cut(s) 687
PsuI RGATCY 1 cut(s) 587
PteI GCGCGC 1 cut(s) 442
RsaI GTAC 2 cut(s) 430, 749
RsaNI GTAC 2 cut(s) 429, 748
RseI CAYNNNNRTG 2 cut(s) 500, 1010
SapI GCTCTTC 1 cut(s) 954
SaqAI TTAA 1 cut(s) 698
SatI GCNGC 9 cut(s) 84, 264, 414, 477, 597, 831, 945, 1018, 1040
Sau3AI GATC 3 cut(s) 303, 354, 587
Sau96I GGNCC 2 cut(s) 254, 569
SchI GAGTC 1 cut(s) 384
ScrFI CCNGG 4 cut(s) 290, 325, 470, 573
SduI GDGCHC 1 cut(s) 880
SfaNI GCATC 3 cut(s) 914, 976, 1026
Sfr274I CTCGAG 1 cut(s) 712
SlaI CTCGAG 1 cut(s) 712
SmiMI CAYNNNNRTG 2 cut(s) 500, 1010
SmlI CTYRAG 1 cut(s) 712
SmoI CTYRAG 1 cut(s) 712
Sse9I AATT 3 cut(s) 117, 197, 375
SsiI CCGC 7 cut(s) 160, 190, 261, 477, 831, 1039, 1042
SspMI CTAG 1 cut(s) 668
StyD4I CCNGG 4 cut(s) 288, 323, 468, 571
StyI CCWWGG 3 cut(s) 490, 776, 861
TaaI ACNGT 1 cut(s) 709
TaiI ACGT 2 cut(s) 749, 999
TaqI TCGA 2 cut(s) 713, 1010
TasI AATT 3 cut(s) 117, 197, 375
TauI GCSGC 3 cut(s) 479, 833, 1042
Tru1I TTAA 1 cut(s) 698
Tru9I TTAA 1 cut(s) 698
TscAI CASTG 4 cut(s) 274, 507, 583, 598
TseFI GTSAC 1 cut(s) 502
TseI GCWGC 6 cut(s) 83, 263, 413, 596, 944, 1017
Tsp45I GTSAC 1 cut(s) 502
TspDTI ATGAA 2 cut(s) 263, 533
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 4 cut(s) 274, 507, 583, 598
VneI GTGCAC 1 cut(s) 876
XapI RAATTY 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 712
XspI CTAG 1 cut(s) 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.