Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008669

Physical Location & Seq

Genomic Coordinates Forward (+)

26834340 .. 26838102

Gene Structure 3763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g23820.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAAACAAGAGATTTTCTTTTCAAGGAATTTCCCCAAATACTTCACTTTTCCTTCACACACACTCAAACCCACATTCAAAATACACAAAAAAATGGCATTGTCGACAACTCACCTCCTCCTACACATCAAACCCCCTCGAAGTCCTTCCTTATTCCAATCCCAATCCCACCGCGTGTCCTCCTCCTCCCTCCCCATCCTCCGCACAAAATTCCTAACCCCAACCCACCCTCGCCACAGCAATCCCCCCAAACAAACAATGAACAGGCCTCCCGCAGCCAGTGTGCAGAGTGCTGTGTCCCAGGCAATGAGCCTGATCCAGTCGTCGCCTCCGACCTGGCAGTCCTCCGTCCTCAGCAACCTCCTGATCTTCCTGCTGGGTTCTCCAATTCTGGTCTCCGGACTCTCTGCCTCTGGCATTGGAGCTGCTTTCTTGCTCGGTACTCTCACTTGGCGCGCTTTTGGGTCATCTGGGTTTCTCCTGGTGGCCGCATACTTCGTCCTTGGCACGGCAGTGACAAAGGTGAGGATGAAACAAAAGGAGGCTGAAGGGGTAGCCGAGAAGAGGAAAGGAAGGAGAGGCCCTGGCAGTGTCATTGGATCCAGTGCTGCTGGTTGTGTCTGTGCTTTCCTGTCAATACTTGGAGTAGGAGGAAGCGGATATTCTCGGCTTTGGCAACTAGGGTTTGTTGCCAGCTTCTGTACTAAGTTAAGTGATACTGTCTCAAGTGAGATGGGAAAGGCATATGGAAAAACAACGTACTTAGTTACAACATTGAAGGTAGTTCCAAGGGGAACAGAGGGGGCTATGAGTGTTGAGGGAACCTTTGCTGGACTTTTGGCCGCTATCCTTCTTGCGTTTGTTGGTTGTGCCATGGGTGAGGTAAGTGCACCTGAAGCACTGATATGCGTAATAGCTTCACAAATAGCTAATCTTGGTGAGAGCATTATAGGTGCTGCTCTTCAAGACAAGGAAGGATTTAGATGGCTCAACAACGATGCTGTGAACGTCATAAACATATCGATGGGCAGCATTTTGGCAGTCTTGATGCGGCAGGTTTTGCTCCAGAACTGGAGTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF92

Protein Analysis

361

Amino Acids

38.45

Weight (kDa)

10.15

Isoelectric Point (pI)

50.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78620 AT1G78620
fragaria_vesca	FvH4_3g17770 FvH4_3g17770 FvH4_3g17770 FvH4_3g17770 FvH4_3g17770
malus_domestica	MD03G1247900.v1.1 MD11G1269700.v1.1
prunus_persica	Prupe.4G156800_v2.0.a1 Prupe.4G156800_v2.0.a1
pyrus_communis	pycom03g19660 pycom11g23820
rosa_chinensis	RchiOBHm_Chr5g0029561
rosa_laevigata	RLG00000033179
rosa_multiflora	Rmu_sc0000210.1_g000016 Rmu_sc0001608.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050380
rosa_samantha	Rh5AG207100 Rh5BG205800 Rh5CG227900 Rh5DG209600
rosa_wichuraiana	Rw5G018840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	340
Acc36I	ACCTGC	1 cut(s)	1045
AccI	GTMKAC	1 cut(s)	104
AccII	CGCG	2 cut(s)	174, 456
AccIII	TCCGGA	1 cut(s)	398
AciI	CCGC	7 cut(s)	172, 202, 273, 489, 657, 843, 1051
AclWI	GGATC	3 cut(s)	310, 594, 607
AcoI	YGGCCR	2 cut(s)	486, 840
AcsI	RAATTY	2 cut(s)	28, 209
AcuI	CTGAAG	2 cut(s)	567, 915
AdeI	CACNNNGTG	1 cut(s)	175
AfaI	GTAC	3 cut(s)	442, 703, 761
AfiI	CCNNNNNNNGG	2 cut(s)	508, 564
AgsI	TTSAA	4 cut(s)	24, 79, 778, 965
AjnI	CCWGG	4 cut(s)	300, 335, 480, 583
AleI	CACNNNNGTG	1 cut(s)	512
AluBI	AGCT	4 cut(s)	425, 696, 917, 929
AluI	AGCT	4 cut(s)	425, 696, 917, 929
Alw21I	GWGCWC	1 cut(s)	892
Alw26I	GTCTC	2 cut(s)	400, 727
Alw44I	GTGCAC	1 cut(s)	888
AlwI	GGATC	3 cut(s)	310, 594, 607
AlwNI	CAGNNNCTG	1 cut(s)	699
Aor13HI	TCCGGA	1 cut(s)	398
AoxI	GGCC	4 cut(s)	266, 486, 580, 840
ApaLI	GTGCAC	1 cut(s)	888
ApeKI	GCWGC	5 cut(s)	275, 425, 608, 956, 1029
ApoI	RAATTY	2 cut(s)	28, 209
Asp700I	GAANNNNTTC	1 cut(s)	145
AspLEI	GCGC	2 cut(s)	456, 458
AspS9I	GGNCC	1 cut(s)	581
AsuHPI	GGTGA	4 cut(s)	104, 535, 890, 950
BaeGI	GKGCMC	1 cut(s)	892
BamHI	GGATCC	1 cut(s)	599
Bbv12I	GWGCWC	1 cut(s)	892
BbvCI	CCTCAGC	1 cut(s)	353
BbvI	GCAGC	5 cut(s)	287, 412, 595, 943, 1041
BccI	CCATC	4 cut(s)	203, 727, 978, 1018
BceAI	ACGGC	1 cut(s)	525
BciT130I	CCWGG	4 cut(s)	302, 337, 482, 585
BcoDI	GTCTC	2 cut(s)	400, 727
BfaI	CTAG	1 cut(s)	680
BfuAI	ACCTGC	1 cut(s)	1045
BisI	GCNGC	8 cut(s)	276, 426, 489, 609, 843, 957, 1030, 1052
BlsI	GCNGC	8 cut(s)	277, 427, 490, 610, 844, 958, 1031, 1053
Bme1390I	CCNGG	4 cut(s)	302, 337, 482, 585
BmgT120I	GGNCC	1 cut(s)	581
BmiI	GGNNCC	2 cut(s)	601, 823
BmrFI	CCNGG	4 cut(s)	302, 337, 482, 585
BmsI	GCATC	2 cut(s)	988, 1038
BpmI	CTGGAG	1 cut(s)	1049
Bpu10I	CCTNAGC	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	709
Bsa29I	ATCGAT	1 cut(s)	1022
BsaI	GGTCTC	1 cut(s)	400
BsaJI	CCNNGG	5 cut(s)	300, 502, 583, 788, 873
BsaWI	WCCGGW	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	2 cut(s)	508, 564
Bse1I	ACTGG	4 cut(s)	279, 319, 603, 1076
Bse3DI	GCAATG	1 cut(s)	312
BseAI	TCCGGA	1 cut(s)	398
BseBI	CCWGG	4 cut(s)	302, 337, 482, 585
BseCI	ATCGAT	1 cut(s)	1022
BseDI	CCNNGG	5 cut(s)	300, 502, 583, 788, 873
BseGI	GGATG	2 cut(s)	195, 534
BseLI	CCNNNNNNNGG	2 cut(s)	508, 564
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	367
BseNI	ACTGG	4 cut(s)	279, 319, 603, 1076
BsePI	GCGCGC	1 cut(s)	454
BseRI	GAGGAG	3 cut(s)	107, 172, 175
BseSI	GKGCMC	1 cut(s)	892
BseXI	GCAGC	5 cut(s)	287, 412, 595, 943, 1041
BseYI	CCCAGC	1 cut(s)	376
BsgI	GTGCAG	1 cut(s)	305
Bsh1236I	CGCG	2 cut(s)	174, 456
BshFI	GGCC	4 cut(s)	268, 488, 582, 842
BshVI	ATCGAT	1 cut(s)	1022
BsiHKAI	GWGCWC	1 cut(s)	892
BsiSI	CCGG	1 cut(s)	399
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	2 cut(s)	508, 564
BsmAI	GTCTC	2 cut(s)	400, 727
BsmFI	GGGAC	1 cut(s)	283
BsnI	GGCC	4 cut(s)	268, 488, 582, 842
Bso31I	GGTCTC	1 cut(s)	400
Bsp1286I	GDGCHC	1 cut(s)	892
Bsp13I	TCCGGA	1 cut(s)	398
Bsp143I	GATC	3 cut(s)	315, 366, 599
Bsp19I	CCATGG	1 cut(s)	873
BspACI	CCGC	7 cut(s)	172, 202, 273, 489, 657, 843, 1051
BspANI	GGCC	4 cut(s)	268, 488, 582, 842
BspCNI	CTCAG	1 cut(s)	366
BspDI	ATCGAT	1 cut(s)	1022
BspEI	TCCGGA	1 cut(s)	398
BspFNI	CGCG	2 cut(s)	174, 456
BspLI	GGNNCC	2 cut(s)	601, 823
BspMI	ACCTGC	1 cut(s)	1045
BspPI	GGATC	3 cut(s)	310, 594, 607
BspQI	GCTCTTC	1 cut(s)	966
BspTNI	GGTCTC	1 cut(s)	400
BsrDI	GCAATG	1 cut(s)	312
BsrI	ACTGG	4 cut(s)	279, 319, 603, 1076
BssECI	CCNNGG	5 cut(s)	300, 502, 583, 788, 873
BssHII	GCGCGC	1 cut(s)	454
BssMI	GATC	3 cut(s)	315, 366, 599
BssT1I	CCWWGG	3 cut(s)	502, 788, 873
Bst2UI	CCWGG	4 cut(s)	302, 337, 482, 585
Bst4CI	ACNGT	1 cut(s)	721
Bst6I	CTCTTC	2 cut(s)	557, 966
BstAPI	GCANNNNNTGC	1 cut(s)	1060
BstC8I	GCNNGC	2 cut(s)	456, 694
BstDEI	CTNAG	3 cut(s)	353, 705, 763
BstDSI	CCRYGG	1 cut(s)	873
BstF5I	GGATG	2 cut(s)	195, 534
BstFNI	CGCG	2 cut(s)	174, 456
BstHHI	GCGC	2 cut(s)	456, 458
BstKTI	GATC	3 cut(s)	318, 369, 602
BstMAI	GTCTC	2 cut(s)	400, 727
BstMBI	GATC	3 cut(s)	315, 366, 599
BstMWI	GCNNNNNNNGC	2 cut(s)	896, 1060
BstNI	CCWGG	4 cut(s)	302, 337, 482, 585
BstSCI	CCNGG	4 cut(s)	300, 335, 480, 583
BstSLI	GKGCMC	1 cut(s)	892
BstUI	CGCG	2 cut(s)	174, 456
BstV1I	GCAGC	5 cut(s)	287, 412, 595, 943, 1041
BstX2I	RGATCY	1 cut(s)	599
BstYI	RGATCY	1 cut(s)	599
Bsu15I	ATCGAT	1 cut(s)	1022
BsuRI	GGCC	4 cut(s)	268, 488, 582, 842
BsuTUI	ATCGAT	1 cut(s)	1022
BtgI	CCRYGG	1 cut(s)	873
BtsCI	GGATG	2 cut(s)	195, 534
BtsI	GCAGTG	2 cut(s)	519, 595
BtsIMutI	CAGTG	5 cut(s)	286, 519, 595, 610, 899
BveI	ACCTGC	1 cut(s)	1045
Cac8I	GCNNGC	2 cut(s)	456, 694
CaiI	CAGNNNCTG	1 cut(s)	699
CfoI	GCGC	2 cut(s)	456, 458
Cfr13I	GGNCC	1 cut(s)	581
ClaI	ATCGAT	1 cut(s)	1022
Csp6I	GTAC	3 cut(s)	441, 702, 760
CviAII	CATG	1 cut(s)	874
CviQI	GTAC	3 cut(s)	441, 702, 760
DdeI	CTNAG	3 cut(s)	353, 705, 763
DpnI	GATC	3 cut(s)	317, 368, 601
DpnII	GATC	3 cut(s)	315, 366, 599
DraIII	CACNNNGTG	1 cut(s)	175
DrdI	GACNNNNNNGTC	1 cut(s)	340
DseDI	GACNNNNNNGTC	1 cut(s)	340
EaeI	YGGCCR	2 cut(s)	486, 840
Eam1104I	CTCTTC	2 cut(s)	557, 966
EarI	CTCTTC	2 cut(s)	557, 966
Eco130I	CCWWGG	3 cut(s)	502, 788, 873
Eco147I	AGGCCT	1 cut(s)	268
Eco31I	GGTCTC	1 cut(s)	400
Eco57I	CTGAAG	2 cut(s)	567, 915
EcoO109I	RGGNCCY	1 cut(s)	581
EcoRII	CCWGG	4 cut(s)	300, 335, 480, 583
EcoT14I	CCWWGG	3 cut(s)	502, 788, 873
ErhI	CCWWGG	3 cut(s)	502, 788, 873
FaeI	CATG	1 cut(s)	877
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	1 cut(s)	873
FauI	CCCGC	1 cut(s)	280
FauNDI	CATATG	1 cut(s)	745
FblI	GTMKAC	1 cut(s)	104
Fnu4HI	GCNGC	8 cut(s)	276, 426, 489, 609, 843, 957, 1030, 1052
FokI	GGATG	2 cut(s)	182, 541
Fsp4HI	GCNGC	8 cut(s)	276, 426, 489, 609, 843, 957, 1030, 1052
FspBI	CTAG	1 cut(s)	680
GlaI	GCGC	2 cut(s)	455, 457
GluI	GCNGC	8 cut(s)	276, 426, 489, 609, 843, 957, 1030, 1052
GsaI	CCCAGC	1 cut(s)	380
GsuI	CTGGAG	1 cut(s)	1049
HaeIII	GGCC	4 cut(s)	268, 488, 582, 842
HapII	CCGG	1 cut(s)	399
HhaI	GCGC	2 cut(s)	456, 458
Hin1II	CATG	1 cut(s)	877
Hin6I	GCGC	2 cut(s)	454, 456
HinP1I	GCGC	2 cut(s)	454, 456
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HinfI	GANTC	1 cut(s)	402
HpaII	CCGG	1 cut(s)	399
HphI	GGTGA	4 cut(s)	104, 535, 890, 950
Hpy166II	GTNNAC	3 cut(s)	105, 890, 1006
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	5 cut(s)	364, 399, 965, 1045, 1066
Hpy8I	GTNNAC	3 cut(s)	105, 890, 1006
Hpy99I	CGWCG	1 cut(s)	328
HpyAV	CCTTC	7 cut(s)	63, 156, 542, 567, 772, 860, 968
HpyCH4III	ACNGT	1 cut(s)	721
HpyCH4IV	ACGT	2 cut(s)	758, 1008
HpyCH4V	TGCA	2 cut(s)	286, 890
HpyF10VI	GCNNNNNNNGC	2 cut(s)	896, 1060
HpyF3I	CTNAG	3 cut(s)	353, 705, 763
HpySE526I	ACGT	2 cut(s)	758, 1008
Hsp92II	CATG	1 cut(s)	877
HspAI	GCGC	2 cut(s)	454, 456
Kpn2I	TCCGGA	1 cut(s)	398
Kzo9I	GATC	3 cut(s)	315, 366, 599
LguI	GCTCTTC	1 cut(s)	966
LmnI	GCTCC	2 cut(s)	422, 1068
Lsp1109I	GCAGC	5 cut(s)	287, 412, 595, 943, 1041
LweI	GCATC	2 cut(s)	988, 1038
MaeI	CTAG	1 cut(s)	680
MaeII	ACGT	2 cut(s)	758, 1008
MaeIII	GTNAC	2 cut(s)	514, 766
MalI	GATC	3 cut(s)	317, 368, 601
MboI	GATC	3 cut(s)	315, 366, 599
MboII	GAAGA	3 cut(s)	361, 574, 953
MflI	RGATCY	1 cut(s)	599
MhlI	GDGCHC	1 cut(s)	892
MluCI	AATT	3 cut(s)	28, 209, 387
MlyI	GAGTC	1 cut(s)	396
MmeI	TCCRAC	1 cut(s)	356
MroI	TCCGGA	1 cut(s)	398
MroXI	GAANNNNTTC	1 cut(s)	145
MseI	TTAA	1 cut(s)	710
MslI	CAYNNNNRTG	3 cut(s)	512, 904, 1022
MspI	CCGG	1 cut(s)	399
MspR9I	CCNGG	4 cut(s)	302, 337, 482, 585
MvaI	CCWGG	4 cut(s)	302, 337, 482, 585
MvnI	CGCG	2 cut(s)	174, 456
MwoI	GCNNNNNNNGC	2 cut(s)	896, 1060
NcoI	CCATGG	1 cut(s)	873
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	3 cut(s)	315, 366, 599
NlaIII	CATG	1 cut(s)	877
NlaIV	GGNNCC	2 cut(s)	601, 823
NmeAIII	GCCGAG	2 cut(s)	583, 646
NmuCI	GTSAC	1 cut(s)	514
OliI	CACNNNNGTG	1 cut(s)	512
PauI	GCGCGC	1 cut(s)	454
PceI	AGGCCT	1 cut(s)	268
PciSI	GCTCTTC	1 cut(s)	966
PcsI	WCGNNNNNNNCGW	1 cut(s)	329
PdmI	GAANNNNTTC	1 cut(s)	145
PkrI	GCNGC	8 cut(s)	277, 427, 490, 610, 844, 958, 1031, 1053
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
Psp6I	CCWGG	4 cut(s)	300, 335, 480, 583
PspFI	CCCAGC	1 cut(s)	376
PspGI	CCWGG	4 cut(s)	300, 335, 480, 583
PspN4I	GGNNCC	2 cut(s)	601, 823
PspPI	GGNCC	1 cut(s)	581
PstNI	CAGNNNCTG	1 cut(s)	699
PsuI	RGATCY	1 cut(s)	599
PteI	GCGCGC	1 cut(s)	454
RsaI	GTAC	3 cut(s)	442, 703, 761
RsaNI	GTAC	3 cut(s)	441, 702, 760
RseI	CAYNNNNRTG	3 cut(s)	512, 904, 1022
SalI	GTCGAC	1 cut(s)	103
SapI	GCTCTTC	1 cut(s)	966
SaqAI	TTAA	1 cut(s)	710
SatI	GCNGC	8 cut(s)	276, 426, 489, 609, 843, 957, 1030, 1052
Sau3AI	GATC	3 cut(s)	315, 366, 599
Sau96I	GGNCC	1 cut(s)	581
SchI	GAGTC	1 cut(s)	396
ScrFI	CCNGG	4 cut(s)	302, 337, 482, 585
SduI	GDGCHC	1 cut(s)	892
SfaNI	GCATC	2 cut(s)	988, 1038
SmiMI	CAYNNNNRTG	3 cut(s)	512, 904, 1022
SmlI	CTYRAG	1 cut(s)	724
SmoI	CTYRAG	1 cut(s)	724
Sse9I	AATT	3 cut(s)	28, 209, 387
SseBI	AGGCCT	1 cut(s)	268
SsiI	CCGC	7 cut(s)	172, 202, 273, 489, 657, 843, 1051
SspMI	CTAG	1 cut(s)	680
StuI	AGGCCT	1 cut(s)	268
StyD4I	CCNGG	4 cut(s)	300, 335, 480, 583
StyI	CCWWGG	3 cut(s)	502, 788, 873
TaaI	ACNGT	1 cut(s)	721
TaiI	ACGT	2 cut(s)	761, 1011
TaqI	TCGA	3 cut(s)	104, 139, 1022
TasI	AATT	3 cut(s)	28, 209, 387
TatI	WGTACW	1 cut(s)	701
TauI	GCSGC	3 cut(s)	491, 845, 1054
Tru1I	TTAA	1 cut(s)	710
Tru9I	TTAA	1 cut(s)	710
TscAI	CASTG	5 cut(s)	286, 519, 595, 610, 906
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	5 cut(s)	275, 425, 608, 956, 1029
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	3 cut(s)	17, 275, 545
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	5 cut(s)	286, 519, 595, 610, 906
VneI	GTGCAC	1 cut(s)	888
XapI	RAATTY	2 cut(s)	28, 209
XmiI	GTMKAC	1 cut(s)	104
XmnI	GAANNNNTTC	1 cut(s)	145
XspI	CTAG	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.