Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000210.1

Orthogroup ID

OG0008669

Physical Location & Seq

Genomic Coordinates Reverse (-)

73270 .. 76814

Gene Structure 3545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000210.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atggcattgtcaacactcttgcacatcaaaccacctcctccgtttccttcactaaaatcccaccgctccttcttcccaattctccacccaaaaatctcaatcccaatcccaatccaaaaccctaaacccatcaaacacttcactatgcagaggcctcatgcatccaccactgtgcacagtgctgtctccggcgccttcaccctgatccaatcctcgcccgccacgtggcagtcggcaatcctcagcaacctcctgatcttcgttctgggctctccgattttggtttctgggctctctctttccggcattgctgctgcgtttttgctcggaactctcacttggcgcgcttttgggccatctgggtttctcttggtggcaacctacttcatcattggcacggcggtgacaaaggtgagaatggcacagaaggaggctgagggggtagctgagaagagaaaaggaaggagaggcccaggcagtgttattggatccagtgctgctggttgcatttgcgcttttctcacgatatttctagtaggaggaaaggcatattcccggctctggcaactagggtttgttgccagtttctgtactaagttgagtgacactgtctcaagtgaggtgggaaaggcatatgggaaaacaacgtacttggtaacaacattgaaggtagttccacggggaacagagggagctgtgagtcttgagggaaccattgctggacttttggcatctgttcttcttgcgtttgttggttgtctcatgggtcagataaatggacctgaagcaattatatgtgtaatagcttcccaaatagcaaatgttggtgagagcattataggtgctgctcttcaagacaaggaaggatttcgatggcttaacaatgatgctgtgaatgtcataaacatatccatgggcagcatttttgccgtcttgatgcagcaggcattactcaaaaacttacatatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF92

Protein Analysis

323

Amino Acids

34.13

Weight (kDa)

9.87

Isoelectric Point (pI)

31.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78620 AT1G78620
fragaria_vesca	FvH4_3g17770 FvH4_3g17770 FvH4_3g17770 FvH4_3g17770 FvH4_3g17770
malus_domestica	MD03G1247900.v1.1 MD11G1269700.v1.1
prunus_persica	Prupe.4G156800_v2.0.a1 Prupe.4G156800_v2.0.a1
pyrus_communis	pycom03g19660 pycom11g23820
rosa_chinensis	RchiOBHm_Chr5g0029561
rosa_laevigata	RLG00000033179
rosa_multiflora	Rmu_sc0000210.1_g000016 Rmu_sc0001608.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050380
rosa_samantha	Rh5AG207100 Rh5BG205800 Rh5CG227900 Rh5DG209600
rosa_wichuraiana	Rw5G018840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	191
AccBSI	CCGCTC	1 cut(s)	66
AccII	CGCG	1 cut(s)	345
AciI	CCGC	3 cut(s)	64, 219, 401
AclWI	GGATC	3 cut(s)	199, 483, 496
AcuI	CTGAAG	1 cut(s)	804
AcvI	CACGTG	1 cut(s)	225
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	2 cut(s)	592, 650
AfiI	CCNNNNNNNGG	2 cut(s)	225, 561
AgsI	TTSAA	2 cut(s)	667, 854
AjnI	CCWGG	1 cut(s)	472
AjuI	GAANNNNNNNTTGG	2 cut(s)	322, 354
AleI	CACNNNNGTG	2 cut(s)	170, 401
AluBI	AGCT	3 cut(s)	446, 695, 806
AluI	AGCT	3 cut(s)	446, 695, 806
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	3 cut(s)	190, 616, 764
Alw44I	GTGCAC	1 cut(s)	173
AlwI	GGATC	3 cut(s)	199, 483, 496
AlwNI	CAGNNNCTG	1 cut(s)	588
AoxI	GGCC	3 cut(s)	152, 353, 469
ApaLI	GTGCAC	1 cut(s)	173
ApeKI	GCWGC	6 cut(s)	311, 314, 497, 845, 918, 940
Asp700I	GAANNNNTTC	1 cut(s)	867
AspLEI	GCGC	4 cut(s)	194, 345, 347, 515
AspS9I	GGNCC	3 cut(s)	353, 470, 779
AsuC2I	CCSGG	1 cut(s)	556
AsuHPI	GGTGA	4 cut(s)	190, 415, 424, 839
AvaII	GGWCC	1 cut(s)	779
BaeGI	GKGCMC	1 cut(s)	177
BamHI	GGATCC	1 cut(s)	488
BanI	GGYRCC	1 cut(s)	191
BanII	GRGCYC	2 cut(s)	272, 294
BbrPI	CACGTG	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	177
BbvCI	CCTCAGC	2 cut(s)	242, 435
BbvI	GCAGC	6 cut(s)	298, 301, 484, 832, 930, 952
BccI	CCATC	3 cut(s)	137, 364, 867
BceAI	ACGGC	2 cut(s)	414, 914
BciT130I	CCWGG	1 cut(s)	474
BcnI	CCSGG	1 cut(s)	556
BcoDI	GTCTC	3 cut(s)	190, 616, 764
BfaI	CTAG	2 cut(s)	533, 569
BfoI	RGCGCY	1 cut(s)	195
BisI	GCNGC	6 cut(s)	312, 315, 498, 846, 919, 941
BlsI	GCNGC	6 cut(s)	313, 316, 499, 847, 920, 942
Bme1390I	CCNGG	2 cut(s)	474, 556
Bme18I	GGWCC	1 cut(s)	779
BmgT120I	GGNCC	3 cut(s)	353, 470, 779
BmiI	GGNNCC	3 cut(s)	193, 490, 712
BmrFI	CCNGG	2 cut(s)	474, 556
BmsI	GCATC	4 cut(s)	170, 740, 877, 927
Bpu10I	CCTNAGC	2 cut(s)	242, 435
BpuEI	CTTGAG	2 cut(s)	598, 725
BpuMI	CCSGG	1 cut(s)	556
BsaAI	YACGTR	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	3 cut(s)	472, 677, 912
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 561
Bse1I	ACTGG	2 cut(s)	492, 582
Bse3DI	GCAATG	2 cut(s)	306, 714
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	3 cut(s)	472, 677, 912
BseGI	GGATG	1 cut(s)	161
BseLI	CCNNNNNNNGG	2 cut(s)	225, 561
BseMI	GCAATG	2 cut(s)	306, 714
BseMII	CTCAG	3 cut(s)	256, 426, 438
BseNI	ACTGG	2 cut(s)	492, 582
BsePI	GCGCGC	1 cut(s)	343
BseRI	GAGGAG	1 cut(s)	27
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	6 cut(s)	298, 301, 484, 832, 930, 952
Bsh1236I	CGCG	1 cut(s)	345
BshFI	GGCC	3 cut(s)	154, 355, 471
BshNI	GGYRCC	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	3 cut(s)	189, 303, 556
BslI	CCNNNNNNNGG	2 cut(s)	225, 561
BsmAI	GTCTC	3 cut(s)	190, 616, 764
BsnI	GGCC	3 cut(s)	154, 355, 471
Bsp1286I	GDGCHC	3 cut(s)	177, 272, 294
Bsp143I	GATC	3 cut(s)	204, 255, 488
Bsp19I	CCATGG	1 cut(s)	912
BspACI	CCGC	3 cut(s)	64, 219, 401
BspANI	GGCC	3 cut(s)	154, 355, 471
BspCNI	CTCAG	3 cut(s)	255, 427, 439
BspFNI	CGCG	1 cut(s)	345
BspLI	GGNNCC	3 cut(s)	193, 490, 712
BspPI	GGATC	3 cut(s)	199, 483, 496
BspQI	GCTCTTC	1 cut(s)	855
BspT107I	GGYRCC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	66
BsrDI	GCAATG	2 cut(s)	306, 714
BsrI	ACTGG	2 cut(s)	492, 582
BssECI	CCNNGG	3 cut(s)	472, 677, 912
BssHII	GCGCGC	1 cut(s)	343
BssMI	GATC	3 cut(s)	204, 255, 488
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	912
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	3 cut(s)	172, 179, 610
Bst6I	CTCTTC	2 cut(s)	446, 855
BstACI	GRCGYC	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	225
BstC8I	GCNNGC	3 cut(s)	219, 345, 945
BstDEI	CTNAG	4 cut(s)	242, 435, 447, 594
BstDSI	CCRYGG	2 cut(s)	677, 912
BstF5I	GGATG	1 cut(s)	161
BstFNI	CGCG	1 cut(s)	345
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	4 cut(s)	194, 345, 347, 515
BstKTI	GATC	3 cut(s)	207, 258, 491
BstMAI	GTCTC	3 cut(s)	190, 616, 764
BstMBI	GATC	3 cut(s)	204, 255, 488
BstNI	CCWGG	1 cut(s)	474
BstSCI	CCNGG	2 cut(s)	472, 554
BstSLI	GKGCMC	1 cut(s)	177
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	6 cut(s)	298, 301, 484, 832, 930, 952
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
BsuRI	GGCC	3 cut(s)	154, 355, 471
BtgI	CCRYGG	2 cut(s)	677, 912
BtsCI	GGATG	1 cut(s)	161
BtsI	GCAGTG	1 cut(s)	484
BtsIMutI	CAGTG	5 cut(s)	168, 184, 484, 499, 606
Cac8I	GCNNGC	3 cut(s)	219, 345, 945
CaiI	CAGNNNCTG	1 cut(s)	588
CfoI	GCGC	4 cut(s)	194, 345, 347, 515
Cfr13I	GGNCC	3 cut(s)	353, 470, 779
Csp6I	GTAC	2 cut(s)	591, 649
CspCI	CAANNNNNGTGG	2 cut(s)	603, 638
CviAII	CATG	3 cut(s)	158, 763, 913
CviQI	GTAC	2 cut(s)	591, 649
DdeI	CTNAG	4 cut(s)	242, 435, 447, 594
DinI	GGCGCC	1 cut(s)	193
DpnI	GATC	3 cut(s)	206, 257, 490
DpnII	GATC	3 cut(s)	204, 255, 488
Eam1104I	CTCTTC	2 cut(s)	446, 855
EarI	CTCTTC	2 cut(s)	446, 855
Eco130I	CCWWGG	1 cut(s)	912
Eco147I	AGGCCT	1 cut(s)	154
Eco24I	GRGCYC	2 cut(s)	272, 294
Eco47I	GGWCC	1 cut(s)	779
Eco57I	CTGAAG	1 cut(s)	804
Eco72I	CACGTG	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	912
EcoT22I	ATGCAT	1 cut(s)	163
EcoT38I	GRGCYC	2 cut(s)	272, 294
EgeI	GGCGCC	1 cut(s)	193
EheI	GGCGCC	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	912
FaeI	CATG	3 cut(s)	161, 766, 916
FatI	CATG	3 cut(s)	157, 762, 912
FauI	CCCGC	1 cut(s)	226
FauNDI	CATATG	2 cut(s)	634, 966
Fnu4HI	GCNGC	6 cut(s)	312, 315, 498, 846, 919, 941
FokI	GGATG	1 cut(s)	148
FriOI	GRGCYC	2 cut(s)	272, 294
Fsp4HI	GCNGC	6 cut(s)	312, 315, 498, 846, 919, 941
FspBI	CTAG	2 cut(s)	533, 569
GlaI	GCGC	4 cut(s)	193, 344, 346, 514
GluI	GCNGC	6 cut(s)	312, 315, 498, 846, 919, 941
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	3 cut(s)	154, 355, 471
HapII	CCGG	3 cut(s)	189, 303, 556
HhaI	GCGC	4 cut(s)	194, 345, 347, 515
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	3 cut(s)	161, 766, 916
Hin6I	GCGC	4 cut(s)	192, 343, 345, 513
HinP1I	GCGC	4 cut(s)	192, 343, 345, 513
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	1 cut(s)	700
HpaII	CCGG	3 cut(s)	189, 303, 556
HphI	GGTGA	4 cut(s)	190, 415, 424, 839
Hpy166II	GTNNAC	2 cut(s)	12, 175
Hpy188I	TCNGA	3 cut(s)	276, 329, 771
Hpy188III	TCNNGA	5 cut(s)	253, 523, 704, 854, 934
Hpy8I	GTNNAC	2 cut(s)	12, 175
HpyAV	CCTTC	7 cut(s)	57, 79, 205, 421, 456, 661, 857
HpyCH4III	ACNGT	3 cut(s)	172, 179, 610
HpyCH4IV	ACGT	2 cut(s)	224, 647
HpyCH4V	TGCA	6 cut(s)	22, 148, 161, 175, 507, 940
HpyF3I	CTNAG	4 cut(s)	242, 435, 447, 594
HpySE526I	ACGT	2 cut(s)	224, 647
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	3 cut(s)	161, 766, 916
HspAI	GCGC	4 cut(s)	192, 343, 345, 513
KasI	GGCGCC	1 cut(s)	191
Kzo9I	GATC	3 cut(s)	204, 255, 488
LguI	GCTCTTC	1 cut(s)	855
LmnI	GCTCC	2 cut(s)	71, 692
Lsp1109I	GCAGC	6 cut(s)	298, 301, 484, 832, 930, 952
LweI	GCATC	4 cut(s)	170, 740, 877, 927
MaeI	CTAG	2 cut(s)	533, 569
MaeII	ACGT	2 cut(s)	224, 647
MaeIII	GTNAC	3 cut(s)	403, 602, 655
MalI	GATC	3 cut(s)	206, 257, 490
MbiI	CCGCTC	1 cut(s)	66
MboI	GATC	3 cut(s)	204, 255, 488
MboII	GAAGA	5 cut(s)	64, 250, 463, 731, 842
MflI	RGATCY	1 cut(s)	488
MhlI	GDGCHC	3 cut(s)	177, 272, 294
MluCI	AATT	2 cut(s)	78, 789
Mly113I	GGCGCC	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	709
Mph1103I	ATGCAT	1 cut(s)	163
MroXI	GAANNNNTTC	1 cut(s)	867
MseI	TTAA	1 cut(s)	879
MslI	CAYNNNNRTG	3 cut(s)	170, 401, 911
MspI	CCGG	3 cut(s)	189, 303, 556
MspR9I	CCNGG	2 cut(s)	474, 556
MvaI	CCWGG	1 cut(s)	474
MvnI	CGCG	1 cut(s)	345
NarI	GGCGCC	1 cut(s)	192
NciI	CCSGG	1 cut(s)	556
NcoI	CCATGG	1 cut(s)	912
NdeI	CATATG	2 cut(s)	634, 966
NdeII	GATC	3 cut(s)	204, 255, 488
NlaIII	CATG	3 cut(s)	161, 766, 916
NlaIV	GGNNCC	3 cut(s)	193, 490, 712
NmuCI	GTSAC	2 cut(s)	403, 602
NsiI	ATGCAT	1 cut(s)	163
OliI	CACNNNNGTG	2 cut(s)	170, 401
PauI	GCGCGC	1 cut(s)	343
PceI	AGGCCT	1 cut(s)	154
PciSI	GCTCTTC	1 cut(s)	855
PcsI	WCGNNNNNNNCGW	1 cut(s)	221
PdmI	GAANNNNTTC	1 cut(s)	867
PflFI	GACNNNGTC	1 cut(s)	608
PkrI	GCNGC	6 cut(s)	313, 316, 499, 847, 920, 942
PleI	GAGTC	1 cut(s)	708
PluTI	GGCGCC	1 cut(s)	195
PmaCI	CACGTG	1 cut(s)	225
PmlI	CACGTG	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	708
Ppu21I	YACGTR	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	472
PspCI	CACGTG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	3 cut(s)	193, 490, 712
PspPI	GGNCC	3 cut(s)	353, 470, 779
PstNI	CAGNNNCTG	1 cut(s)	588
PsuI	RGATCY	1 cut(s)	488
PsyI	GACNNNGTC	1 cut(s)	608
PteI	GCGCGC	1 cut(s)	343
RsaI	GTAC	2 cut(s)	592, 650
RsaNI	GTAC	2 cut(s)	591, 649
RseI	CAYNNNNRTG	3 cut(s)	170, 401, 911
SapI	GCTCTTC	1 cut(s)	855
SaqAI	TTAA	1 cut(s)	879
SatI	GCNGC	6 cut(s)	312, 315, 498, 846, 919, 941
Sau3AI	GATC	3 cut(s)	204, 255, 488
Sau96I	GGNCC	3 cut(s)	353, 470, 779
SchI	GAGTC	1 cut(s)	709
ScrFI	CCNGG	2 cut(s)	474, 556
SduI	GDGCHC	3 cut(s)	177, 272, 294
SfaNI	GCATC	4 cut(s)	170, 740, 877, 927
SfoI	GGCGCC	1 cut(s)	193
SinI	GGWCC	1 cut(s)	779
SmiMI	CAYNNNNRTG	3 cut(s)	170, 401, 911
SmlI	CTYRAG	2 cut(s)	613, 704
SmoI	CTYRAG	2 cut(s)	613, 704
Sse9I	AATT	2 cut(s)	78, 789
SseBI	AGGCCT	1 cut(s)	154
SsiI	CCGC	3 cut(s)	64, 219, 401
SspDI	GGCGCC	1 cut(s)	191
SspMI	CTAG	2 cut(s)	533, 569
StuI	AGGCCT	1 cut(s)	154
StyD4I	CCNGG	2 cut(s)	472, 554
StyI	CCWWGG	1 cut(s)	912
TaaI	ACNGT	3 cut(s)	172, 179, 610
TaiI	ACGT	2 cut(s)	227, 650
TaqI	TCGA	1 cut(s)	871
TasI	AATT	2 cut(s)	78, 789
TatI	WGTACW	1 cut(s)	590
Tru1I	TTAA	1 cut(s)	879
Tru9I	TTAA	1 cut(s)	879
TscAI	CASTG	5 cut(s)	175, 184, 484, 499, 613
TseFI	GTSAC	2 cut(s)	403, 602
TseI	GCWGC	6 cut(s)	311, 314, 497, 845, 918, 940
Tsp45I	GTSAC	2 cut(s)	403, 602
TspDTI	ATGAA	1 cut(s)	376
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	5 cut(s)	175, 184, 484, 499, 613
Tth111I	GACNNNGTC	1 cut(s)	608
VneI	GTGCAC	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	779
XmnI	GAANNNNTTC	1 cut(s)	867
XspI	CTAG	2 cut(s)	533, 569
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.