Rh5DG209600

Integral membrane protein DUF92

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0008669
Physical Location & Seq
Reverse (-)
23226147 .. 23230379
4233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG209600.1

Sequence Viewer

Length: 966 bp
ATGGCATTGTCAACACTCTTGCACATCAAACCACCTCCTCCGTTTCCTTCACTAAAATCCCACCGCTCCTTCTTCCCAATTCTCCCCCCACCAATCCCAATCCCAATCCAAAACCCTAAACCCATCAAACACTTCACTATGCAGAGGCCTCATGCATCCACCACTGTGCACAGTGCTGTCTCCGGCGCCTTCACCCTGATCCGATCCTCGCCCGCCACGTGGCAGTCGGCAATCCTCAGCAACCTCCTGATCTTCGTTCTGGGCTCTCCGATTTTGGTTTCTGGGCTCTCTCTTACCGGCATTGCTGCTGCGTTTTTGCTCGGAACTCTCACTTGGCGCGCTTTTGGGCCATCTGGGTTTCTCTTGGTGGCAACCTACTTCATCATTGGCACGGCGGTGACAAAGGTGAGAATGGCACAAAAGGAGGCTGAGGGGGTAGCTGAGAAGAGAAAAGGAAGGAGAGGCCCAGGCAGCGTTATTGGATCCAGTGCTGCTGGTTGCATTTGCGCTTTTCTCACGATATTTCTAGTAGGAGGAAAGGCATATTCCCGGCTGTGGCAACTAGGGTTTGTTGCCAGTTTCTGTACTAAGTTGAGTGATACTGTCTCCAGTGAGGTGGGAAAGGCATATGGGAAAACAACGTACTTGGTAACAACATTGAAGGTAGTTCCAAGGGGAACAGAGGGAGCTGTGAGTCTCGAGGGAACCCTTGCTGGACTTTTGGCATCTGTTCTTCTTGCATTTGTTGGTTGTCTCATGGGTCAGATAAATGGACCTGAAGCAATTATATGTGTAATAGCTTCCCAAATAGCAAATGTTGGTGAGAGCATTATAGGTGCTGCTCTTCAAGACAAGGAAGGATTTCGATGGCTCAACAATGATGCTGTGAATGTCATAAACATATCCATGGGCAGCATTTTTGCCGTCTTGATGCAGCAGGCATTACTCAAAAACTTATATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF92

Protein Analysis

321

Amino Acids

33.93

Weight (kDa)

9.87

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF92 PF01940 85 - 304 5.5e-58 Integral membrane protein DUF92
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 185
AccBSI CCGCTC 1 cut(s) 66
AccII CGCG 1 cut(s) 339
AciI CCGC 3 cut(s) 64, 213, 395
AclWI GGATC 4 cut(s) 193, 198, 477, 490
AcuI CTGAAG 1 cut(s) 798
AcvI CACGTG 1 cut(s) 219
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 2 cut(s) 586, 644
AfiI CCNNNNNNNGG 2 cut(s) 219, 555
AgsI TTSAA 2 cut(s) 661, 848
AjnI CCWGG 1 cut(s) 466
AjuI GAANNNNNNNTTGG 2 cut(s) 316, 348
AleI CACNNNNGTG 2 cut(s) 164, 395
AluBI AGCT 3 cut(s) 440, 689, 800
AluI AGCT 3 cut(s) 440, 689, 800
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 4 cut(s) 184, 610, 701, 758
Alw44I GTGCAC 1 cut(s) 167
AlwI GGATC 4 cut(s) 193, 198, 477, 490
AlwNI CAGNNNCTG 1 cut(s) 582
Ama87I CYCGRG 1 cut(s) 698
AoxI GGCC 3 cut(s) 146, 347, 463
ApaLI GTGCAC 1 cut(s) 167
ApeKI GCWGC 7 cut(s) 305, 308, 471, 491, 839, 912, 934
Asp700I GAANNNNTTC 1 cut(s) 861
AspLEI GCGC 4 cut(s) 188, 339, 341, 509
AspS9I GGNCC 3 cut(s) 347, 464, 773
AsuC2I CCSGG 1 cut(s) 550
AsuHPI GGTGA 4 cut(s) 184, 409, 418, 833
AvaI CYCGRG 1 cut(s) 698
AvaII GGWCC 1 cut(s) 773
BaeGI GKGCMC 1 cut(s) 171
BamHI GGATCC 1 cut(s) 482
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 2 cut(s) 266, 288
BbrPI CACGTG 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 171
BbvCI CCTCAGC 2 cut(s) 236, 429
BbvI GCAGC 7 cut(s) 292, 295, 478, 483, 826, 924, 946
BccI CCATC 3 cut(s) 131, 358, 861
BceAI ACGGC 2 cut(s) 408, 908
BciT130I CCWGG 1 cut(s) 468
BcnI CCSGG 1 cut(s) 550
BcoDI GTCTC 4 cut(s) 184, 610, 701, 758
BfaI CTAG 2 cut(s) 527, 563
BfoI RGCGCY 1 cut(s) 189
BisI GCNGC 7 cut(s) 306, 309, 472, 492, 840, 913, 935
BlsI GCNGC 7 cut(s) 307, 310, 473, 493, 841, 914, 936
Bme1390I CCNGG 2 cut(s) 468, 550
Bme18I GGWCC 1 cut(s) 773
BmeT110I CYCGRG 1 cut(s) 698
BmgT120I GGNCC 3 cut(s) 347, 464, 773
BmiI GGNNCC 3 cut(s) 187, 484, 706
BmrFI CCNGG 2 cut(s) 468, 550
BmsI GCATC 4 cut(s) 164, 734, 871, 921
BpmI CTGGAG 1 cut(s) 592
Bpu10I CCTNAGC 2 cut(s) 236, 429
BpuMI CCSGG 1 cut(s) 550
BsaAI YACGTR 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 3 cut(s) 466, 671, 906
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 555
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 3 cut(s) 486, 576, 609
Bse3DI GCAATG 1 cut(s) 300
BseBI CCWGG 1 cut(s) 468
BseDI CCNNGG 3 cut(s) 466, 671, 906
BseGI GGATG 1 cut(s) 155
BseLI CCNNNNNNNGG 2 cut(s) 219, 555
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 3 cut(s) 250, 420, 432
BseNI ACTGG 3 cut(s) 486, 576, 609
BsePI GCGCGC 1 cut(s) 337
BseRI GAGGAG 1 cut(s) 27
BseSI GKGCMC 1 cut(s) 171
BseXI GCAGC 7 cut(s) 292, 295, 478, 483, 826, 924, 946
Bsh1236I CGCG 1 cut(s) 339
BshFI GGCC 3 cut(s) 148, 349, 465
BshNI GGYRCC 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 171
BsiHKCI CYCGRG 1 cut(s) 698
BsiSI CCGG 3 cut(s) 183, 297, 550
BslI CCNNNNNNNGG 2 cut(s) 219, 555
BsmAI GTCTC 4 cut(s) 184, 610, 701, 758
BsnI GGCC 3 cut(s) 148, 349, 465
BsoBI CYCGRG 1 cut(s) 698
Bsp1286I GDGCHC 3 cut(s) 171, 266, 288
Bsp143I GATC 4 cut(s) 198, 203, 249, 482
Bsp19I CCATGG 1 cut(s) 906
BspACI CCGC 3 cut(s) 64, 213, 395
BspANI GGCC 3 cut(s) 148, 349, 465
BspCNI CTCAG 3 cut(s) 249, 421, 433
BspFNI CGCG 1 cut(s) 339
BspLI GGNNCC 3 cut(s) 187, 484, 706
BspPI GGATC 4 cut(s) 193, 198, 477, 490
BspQI GCTCTTC 1 cut(s) 849
BspT107I GGYRCC 1 cut(s) 185
BsrBI CCGCTC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 300
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 3 cut(s) 486, 576, 609
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 3 cut(s) 466, 671, 906
BssHII GCGCGC 1 cut(s) 337
BssMI GATC 4 cut(s) 198, 203, 249, 482
BssNI GRCGYC 1 cut(s) 186
BssT1I CCWWGG 2 cut(s) 671, 906
Bst2UI CCWGG 1 cut(s) 468
Bst4CI ACNGT 3 cut(s) 166, 173, 604
Bst6I CTCTTC 2 cut(s) 440, 849
BstACI GRCGYC 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 219
BstC8I GCNNGC 3 cut(s) 213, 339, 939
BstDEI CTNAG 4 cut(s) 236, 429, 441, 588
BstDSI CCRYGG 1 cut(s) 906
BstF5I GGATG 1 cut(s) 155
BstFNI CGCG 1 cut(s) 339
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 4 cut(s) 188, 339, 341, 509
BstKTI GATC 4 cut(s) 201, 206, 252, 485
BstMAI GTCTC 4 cut(s) 184, 610, 701, 758
BstMBI GATC 4 cut(s) 198, 203, 249, 482
BstMWI GCNNNNNNNGC 1 cut(s) 471
BstNI CCWGG 1 cut(s) 468
BstSCI CCNGG 2 cut(s) 466, 548
BstSLI GKGCMC 1 cut(s) 171
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 7 cut(s) 292, 295, 478, 483, 826, 924, 946
BstX2I RGATCY 1 cut(s) 482
BstXI CCANNNNNNTGG 1 cut(s) 616
BstYI RGATCY 1 cut(s) 482
BsuRI GGCC 3 cut(s) 148, 349, 465
BtgI CCRYGG 1 cut(s) 906
BtsCI GGATG 1 cut(s) 155
BtsIMutI CAGTG 4 cut(s) 162, 178, 493, 616
Cac8I GCNNGC 3 cut(s) 213, 339, 939
CaiI CAGNNNCTG 1 cut(s) 582
CfoI GCGC 4 cut(s) 188, 339, 341, 509
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 3 cut(s) 347, 464, 773
Csp6I GTAC 2 cut(s) 585, 643
CviAII CATG 3 cut(s) 152, 757, 907
CviQI GTAC 2 cut(s) 585, 643
DdeI CTNAG 4 cut(s) 236, 429, 441, 588
DinI GGCGCC 1 cut(s) 187
DpnI GATC 4 cut(s) 200, 205, 251, 484
DpnII GATC 4 cut(s) 198, 203, 249, 482
Eam1104I CTCTTC 2 cut(s) 440, 849
EarI CTCTTC 2 cut(s) 440, 849
Eco130I CCWWGG 2 cut(s) 671, 906
Eco147I AGGCCT 1 cut(s) 148
Eco24I GRGCYC 2 cut(s) 266, 288
Eco47I GGWCC 1 cut(s) 773
Eco57I CTGAAG 1 cut(s) 798
Eco72I CACGTG 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 698
EcoRII CCWGG 1 cut(s) 466
EcoT14I CCWWGG 2 cut(s) 671, 906
EcoT22I ATGCAT 1 cut(s) 157
EcoT38I GRGCYC 2 cut(s) 266, 288
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
ErhI CCWWGG 2 cut(s) 671, 906
FaeI CATG 3 cut(s) 155, 760, 910
FatI CATG 3 cut(s) 151, 756, 906
FauI CCCGC 1 cut(s) 220
FauNDI CATATG 1 cut(s) 628
Fnu4HI GCNGC 7 cut(s) 306, 309, 472, 492, 840, 913, 935
FokI GGATG 1 cut(s) 142
FriOI GRGCYC 2 cut(s) 266, 288
Fsp4HI GCNGC 7 cut(s) 306, 309, 472, 492, 840, 913, 935
FspBI CTAG 2 cut(s) 527, 563
GlaI GCGC 4 cut(s) 187, 338, 340, 508
GluI GCNGC 7 cut(s) 306, 309, 472, 492, 840, 913, 935
GsuI CTGGAG 1 cut(s) 592
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 3 cut(s) 148, 349, 465
HapII CCGG 3 cut(s) 183, 297, 550
HhaI GCGC 4 cut(s) 188, 339, 341, 509
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 3 cut(s) 155, 760, 910
Hin6I GCGC 4 cut(s) 186, 337, 339, 507
HinP1I GCGC 4 cut(s) 186, 337, 339, 507
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 1 cut(s) 694
HpaII CCGG 3 cut(s) 183, 297, 550
HphI GGTGA 4 cut(s) 184, 409, 418, 833
Hpy166II GTNNAC 2 cut(s) 12, 169
Hpy188I TCNGA 4 cut(s) 203, 270, 323, 765
Hpy188III TCNNGA 5 cut(s) 247, 517, 698, 848, 928
Hpy8I GTNNAC 2 cut(s) 12, 169
HpyAV CCTTC 6 cut(s) 57, 79, 199, 450, 655, 851
HpyCH4III ACNGT 3 cut(s) 166, 173, 604
HpyCH4IV ACGT 2 cut(s) 218, 641
HpyCH4V TGCA 7 cut(s) 22, 142, 155, 169, 501, 740, 934
HpyF10VI GCNNNNNNNGC 1 cut(s) 471
HpyF3I CTNAG 4 cut(s) 236, 429, 441, 588
HpySE526I ACGT 2 cut(s) 218, 641
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 3 cut(s) 155, 760, 910
HspAI GCGC 4 cut(s) 186, 337, 339, 507
KasI GGCGCC 1 cut(s) 185
Kzo9I GATC 4 cut(s) 198, 203, 249, 482
LguI GCTCTTC 1 cut(s) 849
LmnI GCTCC 2 cut(s) 71, 686
Lsp1109I GCAGC 7 cut(s) 292, 295, 478, 483, 826, 924, 946
LweI GCATC 4 cut(s) 164, 734, 871, 921
MaeI CTAG 2 cut(s) 527, 563
MaeII ACGT 2 cut(s) 218, 641
MaeIII GTNAC 2 cut(s) 397, 649
MalI GATC 4 cut(s) 200, 205, 251, 484
MbiI CCGCTC 1 cut(s) 66
MboI GATC 4 cut(s) 198, 203, 249, 482
MboII GAAGA 5 cut(s) 64, 244, 457, 725, 836
MflI RGATCY 1 cut(s) 482
MhlI GDGCHC 3 cut(s) 171, 266, 288
MluCI AATT 2 cut(s) 78, 783
Mly113I GGCGCC 1 cut(s) 186
MlyI GAGTC 1 cut(s) 703
Mph1103I ATGCAT 1 cut(s) 157
MroXI GAANNNNTTC 1 cut(s) 861
MslI CAYNNNNRTG 3 cut(s) 164, 395, 905
MspI CCGG 3 cut(s) 183, 297, 550
MspR9I CCNGG 2 cut(s) 468, 550
MvaI CCWGG 1 cut(s) 468
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 1 cut(s) 471
NarI GGCGCC 1 cut(s) 186
NciI CCSGG 1 cut(s) 550
NcoI CCATGG 1 cut(s) 906
NdeI CATATG 1 cut(s) 628
NdeII GATC 4 cut(s) 198, 203, 249, 482
NlaIII CATG 3 cut(s) 155, 760, 910
NlaIV GGNNCC 3 cut(s) 187, 484, 706
NmuCI GTSAC 1 cut(s) 397
NsiI ATGCAT 1 cut(s) 157
OliI CACNNNNGTG 2 cut(s) 164, 395
PaeR7I CTCGAG 1 cut(s) 698
PauI GCGCGC 1 cut(s) 337
PceI AGGCCT 1 cut(s) 148
PciSI GCTCTTC 1 cut(s) 849
PcsI WCGNNNNNNNCGW 1 cut(s) 215
PdmI GAANNNNTTC 1 cut(s) 861
PkrI GCNGC 7 cut(s) 307, 310, 473, 493, 841, 914, 936
PleI GAGTC 1 cut(s) 702
PluTI GGCGCC 1 cut(s) 189
PmaCI CACGTG 1 cut(s) 219
PmlI CACGTG 1 cut(s) 219
PpsI GAGTC 1 cut(s) 702
Ppu21I YACGTR 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 466
PspCI CACGTG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 466
PspN4I GGNNCC 3 cut(s) 187, 484, 706
PspPI GGNCC 3 cut(s) 347, 464, 773
PstNI CAGNNNCTG 1 cut(s) 582
PsuI RGATCY 1 cut(s) 482
PteI GCGCGC 1 cut(s) 337
RsaI GTAC 2 cut(s) 586, 644
RsaNI GTAC 2 cut(s) 585, 643
RseI CAYNNNNRTG 3 cut(s) 164, 395, 905
SapI GCTCTTC 1 cut(s) 849
SatI GCNGC 7 cut(s) 306, 309, 472, 492, 840, 913, 935
Sau3AI GATC 4 cut(s) 198, 203, 249, 482
Sau96I GGNCC 3 cut(s) 347, 464, 773
SchI GAGTC 1 cut(s) 703
ScrFI CCNGG 2 cut(s) 468, 550
SduI GDGCHC 3 cut(s) 171, 266, 288
SfaNI GCATC 4 cut(s) 164, 734, 871, 921
SfoI GGCGCC 1 cut(s) 187
Sfr274I CTCGAG 1 cut(s) 698
SinI GGWCC 1 cut(s) 773
SlaI CTCGAG 1 cut(s) 698
SmiMI CAYNNNNRTG 3 cut(s) 164, 395, 905
SmlI CTYRAG 1 cut(s) 698
SmoI CTYRAG 1 cut(s) 698
Sse9I AATT 2 cut(s) 78, 783
SseBI AGGCCT 1 cut(s) 148
SsiI CCGC 3 cut(s) 64, 213, 395
SspDI GGCGCC 1 cut(s) 185
SspMI CTAG 2 cut(s) 527, 563
StuI AGGCCT 1 cut(s) 148
StyD4I CCNGG 2 cut(s) 466, 548
StyI CCWWGG 2 cut(s) 671, 906
TaaI ACNGT 3 cut(s) 166, 173, 604
TaiI ACGT 2 cut(s) 221, 644
TaqI TCGA 2 cut(s) 699, 865
TasI AATT 2 cut(s) 78, 783
TatI WGTACW 1 cut(s) 584
TscAI CASTG 4 cut(s) 169, 178, 493, 616
TseFI GTSAC 1 cut(s) 397
TseI GCWGC 7 cut(s) 305, 308, 471, 491, 839, 912, 934
Tsp45I GTSAC 1 cut(s) 397
TspDTI ATGAA 1 cut(s) 370
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 4 cut(s) 169, 178, 493, 616
VneI GTGCAC 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 773
XhoI CTCGAG 1 cut(s) 698
XmnI GAANNNNTTC 1 cut(s) 861
XspI CTAG 2 cut(s) 527, 563
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.