Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008669

Physical Location & Seq

Genomic Coordinates Reverse (-)

8977450 .. 8980634

Gene Structure 3185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G156800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCATTGTCAACTCATCTCCTATTACACATCAAACCTCCTCCAGTTCCTTCCTTATTAAAATCCCACCGCTCCTCCTCCTCCATTCTCCCCAGAAATTTCCTAATTCCAAGCCCTTGCCACAGGAAACCCATCAAAGAGATCATGATGAAGCCTCAAGCAGCCAGTGTGCAGAGTGCAGTATCAGAGGTAATGAGCCTGATCCAATCATCACCTCCCACGTGGCAGTCCGCCATCCTAAGCAACCTCTTGATCTTTCTATTGGGTTCTCCGATTTTGGTCTCTGGGCTCTCAGTCTCTGGCATTGCAGCTGCTTTCTTGCTTGGTACTCTCACTTGGCGCGCTTTTGGGTCTTCTGGGTTTCTCTTGGTGGCCACATACTTCGTCATTGGCACGGCAGTCACAAAAGTGAGAATGGCACAAAAGGAGGCTGAGGGGGTAGCTGAGAAGAGGAAAGGACGGAGAGGCCCTGGAAGTGTTATTGGATCCAGTGCTGCTGGTTGTATTTGTGCTTTTCTTGCAATATTTGGAGCAGGAGGAATTGGATATTCTCGGCTTTGGCAACTTGGGTTTGTTGCCAGCTTCTGTACTAAGTTGAGTGATACTGTCTCAAGTGAGATAGGAAAGGCATATGGCAAAACAACGTACTTAGTTACAACATTGAAGGTAGTTCCAAGGGGAACAGAGGGGGCTGTAAGTGTCGAGGGAACCTTTGCTGGACTTTTGGCCGCTATTCTTCTTGCATTTGTTGGTGGTCTCATGGGTGAGATAACTGCCCCTGAAGCAATTATATGCGTAATAGCTTCCCAAATAGCTAATTTTGGTGAGAGCATTATAGGTGCTGCTCTTCAAGACAAGGAAGGATTTCGATGGCTCAACAATGATGCTGTGAATGTCATAAACATTTCCATGGGCAGCATTTTAGCAGTCTTCATGCAGCAGGTTTTACTCCAGAACCTGCGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF92

Protein Analysis

323

Amino Acids

33.86

Weight (kDa)

9.68

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78620 AT1G78620
fragaria_vesca	FvH4_3g17770 FvH4_3g17770 FvH4_3g17770 FvH4_3g17770 FvH4_3g17770
malus_domestica	MD03G1247900.v1.1 MD11G1269700.v1.1
prunus_persica	Prupe.4G156800_v2.0.a1 Prupe.4G156800_v2.0.a1
pyrus_communis	pycom03g19660 pycom11g23820
rosa_chinensis	RchiOBHm_Chr5g0029561
rosa_laevigata	RLG00000033179
rosa_multiflora	Rmu_sc0000210.1_g000016 Rmu_sc0001608.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050380
rosa_samantha	Rh5AG207100 Rh5BG205800 Rh5CG227900 Rh5DG209600
rosa_wichuraiana	Rw5G018840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	931
AccBSI	CCGCTC	1 cut(s)	72
AccII	CGCG	1 cut(s)	342
AciI	CCGC	3 cut(s)	70, 231, 729
AclWI	GGATC	3 cut(s)	196, 480, 493
AcoI	YGGCCR	2 cut(s)	372, 726
AcsI	RAATTY	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	801
AcvI	CACGTG	1 cut(s)	222
AfaI	GTAC	3 cut(s)	328, 589, 647
AgsI	TTSAA	2 cut(s)	664, 851
AjnI	CCWGG	1 cut(s)	469
AleI	CACNNNNGTG	1 cut(s)	407
AluBI	AGCT	5 cut(s)	311, 443, 582, 803, 815
AluI	AGCT	5 cut(s)	311, 443, 582, 803, 815
Alw26I	GTCTC	4 cut(s)	286, 301, 613, 761
AlwI	GGATC	3 cut(s)	196, 480, 493
AlwNI	CAGNNNCTG	3 cut(s)	299, 585, 958
AoxI	GGCC	3 cut(s)	372, 466, 726
ApeKI	GCWGC	7 cut(s)	161, 308, 311, 494, 842, 915, 937
ApoI	RAATTY	1 cut(s)	97
Asp700I	GAANNNNTTC	1 cut(s)	864
AspLEI	GCGC	2 cut(s)	342, 344
AspS9I	GGNCC	1 cut(s)	467
AsuHPI	GGTGA	3 cut(s)	204, 776, 836
BalI	TGGCCA	1 cut(s)	374
BamHI	GGATCC	1 cut(s)	485
BanII	GRGCYC	1 cut(s)	291
BbrPI	CACGTG	1 cut(s)	222
BbsI	GAAGAC	2 cut(s)	345, 922
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	7 cut(s)	173, 298, 320, 481, 829, 927, 949
BccI	CCATC	3 cut(s)	140, 242, 864
BceAI	ACGGC	1 cut(s)	411
BciT130I	CCWGG	1 cut(s)	471
BcoDI	GTCTC	4 cut(s)	286, 301, 613, 761
BfuAI	ACCTGC	1 cut(s)	931
BisI	GCNGC	8 cut(s)	162, 309, 312, 495, 729, 843, 916, 938
BlsI	GCNGC	8 cut(s)	163, 310, 313, 496, 730, 844, 917, 939
Bme1390I	CCNGG	1 cut(s)	471
BmgT120I	GGNCC	1 cut(s)	467
BmiI	GGNNCC	2 cut(s)	487, 709
BmrFI	CCNGG	1 cut(s)	471
BmsI	GCATC	1 cut(s)	874
BpiI	GAAGAC	2 cut(s)	345, 922
BpmI	CTGGAG	2 cut(s)	27, 935
Bpu10I	CCTNAGC	2 cut(s)	239, 432
BpuEI	CTTGAG	2 cut(s)	141, 595
BsaAI	YACGTR	1 cut(s)	222
BsaI	GGTCTC	2 cut(s)	286, 761
BsaJI	CCNNGG	3 cut(s)	469, 674, 909
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bse1I	ACTGG	3 cut(s)	44, 165, 489
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	471
BseDI	CCNNGG	3 cut(s)	469, 674, 909
BseGI	GGATG	1 cut(s)	234
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	3 cut(s)	306, 423, 435
BseNI	ACTGG	3 cut(s)	44, 165, 489
BsePI	GCGCGC	1 cut(s)	340
BseRI	GAGGAG	4 cut(s)	30, 64, 67, 70
BseXI	GCAGC	7 cut(s)	173, 298, 320, 481, 829, 927, 949
BsgI	GTGCAG	2 cut(s)	191, 198
Bsh1236I	CGCG	1 cut(s)	342
BshFI	GGCC	3 cut(s)	374, 468, 728
BsmAI	GTCTC	4 cut(s)	286, 301, 613, 761
BsnI	GGCC	3 cut(s)	374, 468, 728
Bso31I	GGTCTC	2 cut(s)	286, 761
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	4 cut(s)	141, 201, 252, 485
Bsp19I	CCATGG	1 cut(s)	909
BspACI	CCGC	3 cut(s)	70, 231, 729
BspANI	GGCC	3 cut(s)	374, 468, 728
BspCNI	CTCAG	3 cut(s)	305, 424, 436
BspFNI	CGCG	1 cut(s)	342
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	487, 709
BspMI	ACCTGC	1 cut(s)	931
BspPI	GGATC	3 cut(s)	196, 480, 493
BspQI	GCTCTTC	1 cut(s)	852
BspTNI	GGTCTC	2 cut(s)	286, 761
BsrBI	CCGCTC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	3 cut(s)	44, 165, 489
BssECI	CCNNGG	3 cut(s)	469, 674, 909
BssHII	GCGCGC	1 cut(s)	340
BssMI	GATC	4 cut(s)	141, 201, 252, 485
BssT1I	CCWWGG	2 cut(s)	674, 909
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	1 cut(s)	607
Bst6I	CTCTTC	2 cut(s)	443, 852
BstBAI	YACGTR	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	342, 580
BstDEI	CTNAG	6 cut(s)	239, 292, 432, 444, 591, 649
BstDSI	CCRYGG	1 cut(s)	909
BstF5I	GGATG	1 cut(s)	234
BstFNI	CGCG	1 cut(s)	342
BstHHI	GCGC	2 cut(s)	342, 344
BstKTI	GATC	4 cut(s)	144, 204, 255, 488
BstMAI	GTCTC	4 cut(s)	286, 301, 613, 761
BstMBI	GATC	4 cut(s)	141, 201, 252, 485
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 782
BstNI	CCWGG	1 cut(s)	471
BstSCI	CCNGG	1 cut(s)	469
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	7 cut(s)	173, 298, 320, 481, 829, 927, 949
BstV2I	GAAGAC	2 cut(s)	345, 922
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
BsuRI	GGCC	3 cut(s)	374, 468, 728
BtgI	CCRYGG	1 cut(s)	909
BtsCI	GGATG	1 cut(s)	234
BtsIMutI	CAGTG	2 cut(s)	172, 496
BveI	ACCTGC	1 cut(s)	931
Cac8I	GCNNGC	2 cut(s)	342, 580
CaiI	CAGNNNCTG	3 cut(s)	299, 585, 958
CciI	TCATGA	1 cut(s)	144
CfoI	GCGC	2 cut(s)	342, 344
Cfr13I	GGNCC	1 cut(s)	467
Csp6I	GTAC	3 cut(s)	327, 588, 646
CviAII	CATG	4 cut(s)	145, 760, 910, 934
CviQI	GTAC	3 cut(s)	327, 588, 646
DdeI	CTNAG	6 cut(s)	239, 292, 432, 444, 591, 649
DpnI	GATC	4 cut(s)	143, 203, 254, 487
DpnII	GATC	4 cut(s)	141, 201, 252, 485
EaeI	YGGCCR	2 cut(s)	372, 726
Eam1104I	CTCTTC	2 cut(s)	443, 852
EarI	CTCTTC	2 cut(s)	443, 852
EciI	GGCGGA	1 cut(s)	220
Eco130I	CCWWGG	2 cut(s)	674, 909
Eco24I	GRGCYC	1 cut(s)	291
Eco31I	GGTCTC	2 cut(s)	286, 761
Eco57I	CTGAAG	1 cut(s)	801
Eco72I	CACGTG	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	469
EcoT14I	CCWWGG	2 cut(s)	674, 909
EcoT38I	GRGCYC	1 cut(s)	291
ErhI	CCWWGG	2 cut(s)	674, 909
FaeI	CATG	4 cut(s)	148, 763, 913, 937
FatI	CATG	4 cut(s)	144, 759, 909, 933
FauNDI	CATATG	1 cut(s)	631
Fnu4HI	GCNGC	8 cut(s)	162, 309, 312, 495, 729, 843, 916, 938
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	8 cut(s)	162, 309, 312, 495, 729, 843, 916, 938
GlaI	GCGC	2 cut(s)	341, 343
GluI	GCNGC	8 cut(s)	162, 309, 312, 495, 729, 843, 916, 938
GsuI	CTGGAG	2 cut(s)	27, 935
HaeIII	GGCC	3 cut(s)	374, 468, 728
HhaI	GCGC	2 cut(s)	342, 344
Hin1II	CATG	4 cut(s)	148, 763, 913, 937
Hin6I	GCGC	2 cut(s)	340, 342
HinP1I	GCGC	2 cut(s)	340, 342
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HphI	GGTGA	3 cut(s)	204, 776, 836
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	2 cut(s)	187, 273
Hpy188III	TCNNGA	4 cut(s)	145, 250, 851, 952
Hpy8I	GTNNAC	1 cut(s)	12
HpyAV	CCTTC	3 cut(s)	60, 658, 854
HpyCH4III	ACNGT	1 cut(s)	607
HpyCH4IV	ACGT	2 cut(s)	221, 644
HpyCH4V	TGCA	6 cut(s)	172, 179, 308, 521, 743, 937
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 782
HpyF3I	CTNAG	6 cut(s)	239, 292, 432, 444, 591, 649
HpySE526I	ACGT	2 cut(s)	221, 644
Hsp92II	CATG	4 cut(s)	148, 763, 913, 937
HspAI	GCGC	2 cut(s)	340, 342
Kzo9I	GATC	4 cut(s)	141, 201, 252, 485
LguI	GCTCTTC	1 cut(s)	852
LmnI	GCTCC	2 cut(s)	77, 530
Lsp1109I	GCAGC	7 cut(s)	173, 298, 320, 481, 829, 927, 949
LweI	GCATC	1 cut(s)	874
MaeII	ACGT	2 cut(s)	221, 644
MaeIII	GTNAC	2 cut(s)	400, 652
MalI	GATC	4 cut(s)	143, 203, 254, 487
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	4 cut(s)	141, 201, 252, 485
MboII	GAAGA	5 cut(s)	345, 460, 728, 839, 922
MflI	RGATCY	1 cut(s)	485
MhlI	GDGCHC	1 cut(s)	291
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	5 cut(s)	97, 105, 540, 786, 817
MluNI	TGGCCA	1 cut(s)	374
Mox20I	TGGCCA	1 cut(s)	374
MroXI	GAANNNNTTC	1 cut(s)	864
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	1 cut(s)	59
MslI	CAYNNNNRTG	2 cut(s)	407, 908
Msp20I	TGGCCA	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	311
MspR9I	CCNGG	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	471
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	2 cut(s)	518, 782
NcoI	CCATGG	1 cut(s)	909
NdeI	CATATG	1 cut(s)	631
NdeII	GATC	4 cut(s)	141, 201, 252, 485
NlaIII	CATG	4 cut(s)	148, 763, 913, 937
NlaIV	GGNNCC	2 cut(s)	487, 709
NmeAIII	GCCGAG	1 cut(s)	532
NmuCI	GTSAC	1 cut(s)	400
OliI	CACNNNNGTG	1 cut(s)	407
PagI	TCATGA	1 cut(s)	144
PauI	GCGCGC	1 cut(s)	340
PciSI	GCTCTTC	1 cut(s)	852
PdmI	GAANNNNTTC	1 cut(s)	864
PkrI	GCNGC	8 cut(s)	163, 310, 313, 496, 730, 844, 917, 939
PmaCI	CACGTG	1 cut(s)	222
PmlI	CACGTG	1 cut(s)	222
Ppu21I	YACGTR	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	469
PspCI	CACGTG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	2 cut(s)	487, 709
PspPI	GGNCC	1 cut(s)	467
PstNI	CAGNNNCTG	3 cut(s)	299, 585, 958
PsuI	RGATCY	1 cut(s)	485
PteI	GCGCGC	1 cut(s)	340
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	3 cut(s)	328, 589, 647
RsaNI	GTAC	3 cut(s)	327, 588, 646
RseI	CAYNNNNRTG	2 cut(s)	407, 908
SapI	GCTCTTC	1 cut(s)	852
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	8 cut(s)	162, 309, 312, 495, 729, 843, 916, 938
Sau3AI	GATC	4 cut(s)	141, 201, 252, 485
Sau96I	GGNCC	1 cut(s)	467
ScrFI	CCNGG	1 cut(s)	471
SduI	GDGCHC	1 cut(s)	291
SfaNI	GCATC	1 cut(s)	874
SmiMI	CAYNNNNRTG	2 cut(s)	407, 908
SmlI	CTYRAG	2 cut(s)	156, 610
SmoI	CTYRAG	2 cut(s)	156, 610
Sse9I	AATT	5 cut(s)	97, 105, 540, 786, 817
SsiI	CCGC	3 cut(s)	70, 231, 729
SspI	AATATT	1 cut(s)	525
StyD4I	CCNGG	1 cut(s)	469
StyI	CCWWGG	2 cut(s)	674, 909
TaaI	ACNGT	1 cut(s)	607
TaiI	ACGT	2 cut(s)	224, 647
TaqI	TCGA	2 cut(s)	702, 868
TasI	AATT	5 cut(s)	97, 105, 540, 786, 817
TatI	WGTACW	1 cut(s)	587
TauI	GCSGC	1 cut(s)	731
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	2 cut(s)	172, 496
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	7 cut(s)	161, 308, 311, 494, 842, 915, 937
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	2 cut(s)	164, 922
TspGWI	ACGGA	1 cut(s)	475
TspRI	CASTG	2 cut(s)	172, 496
XapI	RAATTY	1 cut(s)	97
XmnI	GAANNNNTTC	1 cut(s)	864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.