Rroxscaffold_1G00050380

Integral membrane protein DUF92

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008669
Physical Location & Seq
Forward (+)
70928873 .. 70935638
6766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00050380.1

Sequence Viewer

Length: 1131 bp
ATGTCCGGAAGCTCCGAAGCTCCACGCGGAATCGGGTCTTCGCTTCCCTTGCGGGTCAAACCCGCCTCGCCGAGCTTCTCGACCACGAGGATCGTCGGCTTGGCGTCGAGCTTGGCGGCGGAGAGCACGAAGACGAGTTTCGGCGCGGCGATAGCGAGAGCGAGGCGTCGTGGGCGACCCGCCGGAGGGATGGAGGGAGGGAGAGAGAAATCCGACGTCGCTTGCTCTTATTTGTCTGGGACATCAAGACCAACCTCGGCTCTTGAGAAAGTTGTTGTGATCGAGAAGCAGGCTAGTACCAAAAAACTGAGGCCTCATGCATCCACCACTGTACACAGTGCTGTCTCCGGCGCCTTCAACCTGATCCGATCCTCCCCCGCCACGTGGCAGTCGGCAATCCTCAGCAACCTCCTGATCTTCGTTCTGGGCTCCCCGATTTTGGTTTCCGGGCTCTCTCTTTCCGGCATTGCTGCTGCGTTTTTGCTCGGAACTCTCACTTGGCGCGCTTTTGGGCCATCTGGGTTTCTCTTGGTGGCAACCTACTTCATCATTGGCACGGCGGTGACAAAGGTGAGAATGGCACAAAAGGAGGCTGAGGGGGTAGCTGAGAAGAGGAAAGGAAGGAGAGGCCCAGGCAGTGTTATTGGATCCAGTGCTGCTGGTTGCATTTGCGCTTTTCTCACGATATTTCTAGTAGGAGGAAAGGCATATTCCCGGCTTTGGCAACTAGGGTTTGTTGCCAGTTTCTGTACTAAGTTGAGTGATACTGTCTCAAGTGAGGTGGGAAAGGCATATGGAAAAACAACGTACTTGGTAACAACGTTGAAGGTAGTTCCAAGGGGAACAGAGGGAGCTGTGAGTCTCGAGGGAACCCTTGCTGGACTTTTGGCATCTGTTCTTCTTGCGTTTGTTGGTTGTCTCATGGGTCAGATAAATGGACCTGAAGCAATTATATGTGTAATAGCTTCCCAAATAGCAAATGTTGGTGAGAGCATTATAGGTGCTGCTCTTCAAGATAAGGAAGGATTTCGATGGCTCAACAATGATGCTGTGAATGTCATAAACATATCCATGGGCAGCATTTTTGCCGTCTTGATGCAGCAGGCATTACTCAAAAACTTACATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF92

Protein Analysis

376

Amino Acids

39.02

Weight (kDa)

10.06

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF92 PF01940 140 - 359 8.7e-59 Integral membrane protein DUF92
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 219
AccB1I GGYRCC 1 cut(s) 350
AccII CGCG 3 cut(s) 27, 146, 504
AccIII TCCGGA 1 cut(s) 5
AciI CCGC 9 cut(s) 27, 52, 63, 116, 119, 146, 180, 378, 560
AclI AACGTT 1 cut(s) 821
AclWI GGATC 5 cut(s) 98, 358, 363, 642, 655
AcuI CTGAAG 1 cut(s) 963
AcvI CACGTG 1 cut(s) 384
AcyI GRCGYC 4 cut(s) 104, 166, 216, 351
AfaI GTAC 4 cut(s) 298, 333, 751, 809
AfiI CCNNNNNNNGG 5 cut(s) 185, 186, 384, 439, 720
AgsI TTSAA 3 cut(s) 358, 826, 1013
AjnI CCWGG 1 cut(s) 631
AjuI GAANNNNNNNTTGG 2 cut(s) 481, 513
AleI CACNNNNGTG 1 cut(s) 560
AluBI AGCT 7 cut(s) 12, 20, 75, 111, 605, 854, 965
AluI AGCT 7 cut(s) 12, 20, 75, 111, 605, 854, 965
Alw21I GWGCWC 1 cut(s) 128
Alw26I GTCTC 4 cut(s) 349, 775, 866, 923
AlwI GGATC 5 cut(s) 98, 358, 363, 642, 655
AlwNI CAGNNNCTG 1 cut(s) 747
Ama87I CYCGRG 1 cut(s) 863
Aor13HI TCCGGA 1 cut(s) 5
AoxI GGCC 3 cut(s) 311, 512, 628
ApeKI GCWGC 6 cut(s) 470, 473, 656, 1004, 1077, 1099
Asp700I GAANNNNTTC 1 cut(s) 1026
AspLEI GCGC 5 cut(s) 146, 353, 504, 506, 674
AspS9I GGNCC 3 cut(s) 512, 629, 938
AsuC2I CCSGG 2 cut(s) 448, 715
AsuHPI GGTGA 3 cut(s) 574, 583, 998
AvaI CYCGRG 1 cut(s) 863
AvaII GGWCC 1 cut(s) 938
BamHI GGATCC 1 cut(s) 647
BanI GGYRCC 1 cut(s) 350
BanII GRGCYC 2 cut(s) 431, 453
BauI CACGAG 1 cut(s) 85
BbrPI CACGTG 1 cut(s) 384
BbsI GAAGAC 2 cut(s) 30, 137
Bbv12I GWGCWC 1 cut(s) 128
BbvCI CCTCAGC 2 cut(s) 401, 594
BbvI GCAGC 6 cut(s) 457, 460, 643, 991, 1089, 1111
BccI CCATC 3 cut(s) 184, 523, 1026
BceAI ACGGC 2 cut(s) 573, 1073
BciT130I CCWGG 1 cut(s) 633
BcnI CCSGG 2 cut(s) 448, 715
BcoDI GTCTC 4 cut(s) 349, 775, 866, 923
BfaI CTAG 3 cut(s) 294, 692, 728
BfoI RGCGCY 1 cut(s) 354
BisI GCNGC 8 cut(s) 117, 147, 471, 474, 657, 1005, 1078, 1100
BlsI GCNGC 8 cut(s) 118, 148, 472, 475, 658, 1006, 1079, 1101
Bme1390I CCNGG 3 cut(s) 448, 633, 715
Bme18I GGWCC 1 cut(s) 938
BmeT110I CYCGRG 1 cut(s) 863
BmgT120I GGNCC 3 cut(s) 512, 629, 938
BmiI GGNNCC 4 cut(s) 352, 430, 649, 871
BmrFI CCNGG 3 cut(s) 448, 633, 715
BmsI GCATC 4 cut(s) 329, 899, 1036, 1086
BpiI GAAGAC 2 cut(s) 30, 137
Bpu10I CCTNAGC 2 cut(s) 401, 594
BpuEI CTTGAG 2 cut(s) 284, 757
BpuMI CCSGG 2 cut(s) 448, 715
BsaAI YACGTR 1 cut(s) 384
BsaHI GRCGYC 4 cut(s) 104, 166, 216, 351
BsaJI CCNNGG 4 cut(s) 255, 631, 836, 1071
BsaWI WCCGGW 1 cut(s) 5
Bsc4I CCNNNNNNNGG 5 cut(s) 185, 186, 384, 439, 720
Bse1I ACTGG 2 cut(s) 651, 741
Bse3DI GCAATG 1 cut(s) 465
BseAI TCCGGA 1 cut(s) 5
BseBI CCWGG 1 cut(s) 633
BseDI CCNNGG 4 cut(s) 255, 631, 836, 1071
BseGI GGATG 2 cut(s) 195, 320
BseLI CCNNNNNNNGG 5 cut(s) 185, 186, 384, 439, 720
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 4 cut(s) 299, 415, 585, 597
BseNI ACTGG 2 cut(s) 651, 741
BsePI GCGCGC 1 cut(s) 502
BseXI GCAGC 6 cut(s) 457, 460, 643, 991, 1089, 1111
Bsh1236I CGCG 3 cut(s) 27, 146, 504
BshFI GGCC 3 cut(s) 313, 514, 630
BshNI GGYRCC 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 863
BsiSI CCGG 6 cut(s) 6, 183, 348, 447, 462, 715
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 5 cut(s) 185, 186, 384, 439, 720
BsmAI GTCTC 4 cut(s) 349, 775, 866, 923
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 3 cut(s) 313, 514, 630
BsoBI CYCGRG 1 cut(s) 863
Bsp1286I GDGCHC 3 cut(s) 128, 431, 453
Bsp13I TCCGGA 1 cut(s) 5
Bsp1407I TGTACA 1 cut(s) 331
Bsp143I GATC 6 cut(s) 90, 279, 363, 368, 414, 647
Bsp19I CCATGG 1 cut(s) 1071
BspACI CCGC 9 cut(s) 27, 52, 63, 116, 119, 146, 180, 378, 560
BspANI GGCC 3 cut(s) 313, 514, 630
BspCNI CTCAG 4 cut(s) 300, 414, 586, 598
BspEI TCCGGA 1 cut(s) 5
BspFNI CGCG 3 cut(s) 27, 146, 504
BspLI GGNNCC 4 cut(s) 352, 430, 649, 871
BspPI GGATC 5 cut(s) 98, 358, 363, 642, 655
BspQI GCTCTTC 1 cut(s) 1014
BspT107I GGYRCC 1 cut(s) 350
BsrDI GCAATG 1 cut(s) 465
BsrGI TGTACA 1 cut(s) 331
BsrI ACTGG 2 cut(s) 651, 741
BssECI CCNNGG 4 cut(s) 255, 631, 836, 1071
BssHII GCGCGC 1 cut(s) 502
BssMI GATC 6 cut(s) 90, 279, 363, 368, 414, 647
BssNI GRCGYC 4 cut(s) 104, 166, 216, 351
BssSI CACGAG 1 cut(s) 85
BssT1I CCWWGG 2 cut(s) 836, 1071
Bst2BI CACGAG 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 633
Bst4CI ACNGT 3 cut(s) 331, 338, 769
Bst6I CTCTTC 2 cut(s) 605, 1014
BstACI GRCGYC 4 cut(s) 104, 166, 216, 351
BstAUI TGTACA 1 cut(s) 331
BstBAI YACGTR 1 cut(s) 384
BstC8I GCNNGC 4 cut(s) 223, 291, 504, 1104
BstDEI CTNAG 5 cut(s) 308, 401, 594, 606, 753
BstDSI CCRYGG 1 cut(s) 1071
BstF5I GGATG 2 cut(s) 195, 320
BstFNI CGCG 3 cut(s) 27, 146, 504
BstH2I RGCGCY 1 cut(s) 354
BstHHI GCGC 5 cut(s) 146, 353, 504, 506, 674
BstKTI GATC 6 cut(s) 93, 282, 366, 371, 417, 650
BstMAI GTCTC 4 cut(s) 349, 775, 866, 923
BstMBI GATC 6 cut(s) 90, 279, 363, 368, 414, 647
BstMWI GCNNNNNNNGC 3 cut(s) 49, 152, 172
BstNI CCWGG 1 cut(s) 633
BstSCI CCNGG 3 cut(s) 446, 631, 713
BstUI CGCG 3 cut(s) 27, 146, 504
BstV1I GCAGC 6 cut(s) 457, 460, 643, 991, 1089, 1111
BstV2I GAAGAC 2 cut(s) 30, 137
BstX2I RGATCY 1 cut(s) 647
BstYI RGATCY 1 cut(s) 647
BsuRI GGCC 3 cut(s) 313, 514, 630
BtgI CCRYGG 1 cut(s) 1071
BtsCI GGATG 2 cut(s) 195, 320
BtsI GCAGTG 1 cut(s) 643
BtsIMutI CAGTG 4 cut(s) 327, 343, 643, 658
Cac8I GCNNGC 4 cut(s) 223, 291, 504, 1104
CaiI CAGNNNCTG 1 cut(s) 747
CfoI GCGC 5 cut(s) 146, 353, 504, 506, 674
Cfr13I GGNCC 3 cut(s) 512, 629, 938
CseI GACGC 2 cut(s) 93, 155
Csp6I GTAC 4 cut(s) 297, 332, 750, 808
CspCI CAANNNNNGTGG 2 cut(s) 762, 797
CviAII CATG 3 cut(s) 317, 922, 1072
CviQI GTAC 4 cut(s) 297, 332, 750, 808
DdeI CTNAG 5 cut(s) 308, 401, 594, 606, 753
DinI GGCGCC 1 cut(s) 352
DpnI GATC 6 cut(s) 92, 281, 365, 370, 416, 649
DpnII GATC 6 cut(s) 90, 279, 363, 368, 414, 647
Eam1104I CTCTTC 2 cut(s) 605, 1014
EarI CTCTTC 2 cut(s) 605, 1014
EciI GGCGGA 1 cut(s) 134
Eco130I CCWWGG 2 cut(s) 836, 1071
Eco147I AGGCCT 1 cut(s) 313
Eco24I GRGCYC 2 cut(s) 431, 453
Eco47I GGWCC 1 cut(s) 938
Eco57I CTGAAG 1 cut(s) 963
Eco72I CACGTG 1 cut(s) 384
Eco88I CYCGRG 1 cut(s) 863
EcoRII CCWGG 1 cut(s) 631
EcoT14I CCWWGG 2 cut(s) 836, 1071
EcoT22I ATGCAT 1 cut(s) 322
EcoT38I GRGCYC 2 cut(s) 431, 453
EgeI GGCGCC 1 cut(s) 352
EheI GGCGCC 1 cut(s) 352
ErhI CCWWGG 2 cut(s) 836, 1071
FaeI CATG 3 cut(s) 320, 925, 1075
FaqI GGGAC 1 cut(s) 253
FatI CATG 3 cut(s) 316, 921, 1071
FauI CCCGC 4 cut(s) 45, 70, 187, 385
FauNDI CATATG 2 cut(s) 793, 1125
Fnu4HI GCNGC 8 cut(s) 117, 147, 471, 474, 657, 1005, 1078, 1100
FokI GGATG 2 cut(s) 202, 307
FriOI GRGCYC 2 cut(s) 431, 453
Fsp4HI GCNGC 8 cut(s) 117, 147, 471, 474, 657, 1005, 1078, 1100
FspBI CTAG 3 cut(s) 294, 692, 728
GlaI GCGC 5 cut(s) 145, 352, 503, 505, 673
GluI GCNGC 8 cut(s) 117, 147, 471, 474, 657, 1005, 1078, 1100
HaeII RGCGCY 1 cut(s) 354
HaeIII GGCC 3 cut(s) 313, 514, 630
HapII CCGG 6 cut(s) 6, 183, 348, 447, 462, 715
HgaI GACGC 2 cut(s) 93, 155
HhaI GCGC 5 cut(s) 146, 353, 504, 506, 674
Hin1I GRCGYC 4 cut(s) 104, 166, 216, 351
Hin1II CATG 3 cut(s) 320, 925, 1075
Hin6I GCGC 5 cut(s) 144, 351, 502, 504, 672
HinP1I GCGC 5 cut(s) 144, 351, 502, 504, 672
HinfI GANTC 2 cut(s) 30, 859
HpaII CCGG 6 cut(s) 6, 183, 348, 447, 462, 715
HphI GGTGA 3 cut(s) 574, 583, 998
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 5 cut(s) 16, 214, 368, 488, 930
Hpy8I GTNNAC 1 cut(s) 334
Hpy99I CGWCG 5 cut(s) 98, 109, 171, 218, 221
HpyAV CCTTC 4 cut(s) 364, 615, 820, 1016
HpyCH4III ACNGT 3 cut(s) 331, 338, 769
HpyCH4IV ACGT 4 cut(s) 216, 383, 806, 821
HpyCH4V TGCA 3 cut(s) 320, 666, 1099
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 152, 172
HpyF3I CTNAG 5 cut(s) 308, 401, 594, 606, 753
HpySE526I ACGT 4 cut(s) 216, 383, 806, 821
Hsp92I GRCGYC 4 cut(s) 104, 166, 216, 351
Hsp92II CATG 3 cut(s) 320, 925, 1075
HspAI GCGC 5 cut(s) 144, 351, 502, 504, 672
KasI GGCGCC 1 cut(s) 350
Kpn2I TCCGGA 1 cut(s) 5
Kzo9I GATC 6 cut(s) 90, 279, 363, 368, 414, 647
LguI GCTCTTC 1 cut(s) 1014
LmnI GCTCC 4 cut(s) 17, 25, 434, 851
Lsp1109I GCAGC 6 cut(s) 457, 460, 643, 991, 1089, 1111
LweI GCATC 4 cut(s) 329, 899, 1036, 1086
MaeI CTAG 3 cut(s) 294, 692, 728
MaeII ACGT 4 cut(s) 216, 383, 806, 821
MaeIII GTNAC 2 cut(s) 562, 814
MalI GATC 6 cut(s) 92, 281, 365, 370, 416, 649
MboI GATC 6 cut(s) 90, 279, 363, 368, 414, 647
MboII GAAGA 6 cut(s) 30, 142, 409, 622, 890, 1001
MflI RGATCY 1 cut(s) 647
MhlI GDGCHC 3 cut(s) 128, 431, 453
MluCI AATT 1 cut(s) 948
Mly113I GGCGCC 1 cut(s) 351
MlyI GAGTC 1 cut(s) 868
MmeI TCCRAC 1 cut(s) 237
Mph1103I ATGCAT 1 cut(s) 322
MroI TCCGGA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 1026
MslI CAYNNNNRTG 2 cut(s) 560, 1070
MspI CCGG 6 cut(s) 6, 183, 348, 447, 462, 715
MspR9I CCNGG 3 cut(s) 448, 633, 715
MvaI CCWGG 1 cut(s) 633
MvnI CGCG 3 cut(s) 27, 146, 504
MwoI GCNNNNNNNGC 3 cut(s) 49, 152, 172
NarI GGCGCC 1 cut(s) 351
NciI CCSGG 2 cut(s) 448, 715
NcoI CCATGG 1 cut(s) 1071
NdeI CATATG 2 cut(s) 793, 1125
NdeII GATC 6 cut(s) 90, 279, 363, 368, 414, 647
NlaIII CATG 3 cut(s) 320, 925, 1075
NlaIV GGNNCC 4 cut(s) 352, 430, 649, 871
NmeAIII GCCGAG 2 cut(s) 96, 236
NmuCI GTSAC 1 cut(s) 562
NsiI ATGCAT 1 cut(s) 322
OliI CACNNNNGTG 1 cut(s) 560
PaeR7I CTCGAG 1 cut(s) 863
PauI GCGCGC 1 cut(s) 502
PceI AGGCCT 1 cut(s) 313
PciSI GCTCTTC 1 cut(s) 1014
PdmI GAANNNNTTC 1 cut(s) 1026
PfeI GAWTC 1 cut(s) 30
PkrI GCNGC 8 cut(s) 118, 148, 472, 475, 658, 1006, 1079, 1101
PleI GAGTC 1 cut(s) 867
PluTI GGCGCC 1 cut(s) 354
PmaCI CACGTG 1 cut(s) 384
PmlI CACGTG 1 cut(s) 384
PpsI GAGTC 1 cut(s) 867
Ppu21I YACGTR 1 cut(s) 384
Psp1406I AACGTT 1 cut(s) 821
Psp6I CCWGG 1 cut(s) 631
PspCI CACGTG 1 cut(s) 384
PspGI CCWGG 1 cut(s) 631
PspN4I GGNNCC 4 cut(s) 352, 430, 649, 871
PspPI GGNCC 3 cut(s) 512, 629, 938
PstNI CAGNNNCTG 1 cut(s) 747
PsuI RGATCY 1 cut(s) 647
PteI GCGCGC 1 cut(s) 502
RsaI GTAC 4 cut(s) 298, 333, 751, 809
RsaNI GTAC 4 cut(s) 297, 332, 750, 808
RseI CAYNNNNRTG 2 cut(s) 560, 1070
SapI GCTCTTC 1 cut(s) 1014
SatI GCNGC 8 cut(s) 117, 147, 471, 474, 657, 1005, 1078, 1100
Sau3AI GATC 6 cut(s) 90, 279, 363, 368, 414, 647
Sau96I GGNCC 3 cut(s) 512, 629, 938
SchI GAGTC 1 cut(s) 868
ScrFI CCNGG 3 cut(s) 448, 633, 715
SduI GDGCHC 3 cut(s) 128, 431, 453
SfaNI GCATC 4 cut(s) 329, 899, 1036, 1086
SfoI GGCGCC 1 cut(s) 352
Sfr274I CTCGAG 1 cut(s) 863
SinI GGWCC 1 cut(s) 938
SlaI CTCGAG 1 cut(s) 863
SmiMI CAYNNNNRTG 2 cut(s) 560, 1070
SmlI CTYRAG 3 cut(s) 263, 772, 863
SmoI CTYRAG 3 cut(s) 263, 772, 863
Sse9I AATT 1 cut(s) 948
SseBI AGGCCT 1 cut(s) 313
SsiI CCGC 9 cut(s) 27, 52, 63, 116, 119, 146, 180, 378, 560
SspDI GGCGCC 1 cut(s) 350
SspMI CTAG 3 cut(s) 294, 692, 728
StuI AGGCCT 1 cut(s) 313
StyD4I CCNGG 3 cut(s) 446, 631, 713
StyI CCWWGG 2 cut(s) 836, 1071
TaaI ACNGT 3 cut(s) 331, 338, 769
TaiI ACGT 4 cut(s) 219, 386, 809, 824
TaqI TCGA 5 cut(s) 80, 107, 282, 864, 1030
TasI AATT 1 cut(s) 948
TatI WGTACW 2 cut(s) 331, 749
TauI GCSGC 2 cut(s) 119, 149
TfiI GAWTC 1 cut(s) 30
TscAI CASTG 4 cut(s) 334, 343, 643, 658
TseFI GTSAC 1 cut(s) 562
TseI GCWGC 6 cut(s) 470, 473, 656, 1004, 1077, 1099
Tsp45I GTSAC 1 cut(s) 562
TspDTI ATGAA 1 cut(s) 535
TspRI CASTG 4 cut(s) 334, 343, 643, 658
VpaK11BI GGWCC 1 cut(s) 938
XhoI CTCGAG 1 cut(s) 863
XmnI GAANNNNTTC 1 cut(s) 1026
XspI CTAG 3 cut(s) 294, 692, 728
ZraI GACGTC 1 cut(s) 217
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.