RLG00000033179

Integral membrane protein DUF92

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008669
Physical Location & Seq
Reverse (-)
24131847 .. 24135090
3244 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033179

Sequence Viewer

Length: 963 bp
ATGGCATTGTCAACAGTCTTGCACATCAAACCACCTCCTCCGTTTCCCTCACTAAAATCCCACCGCTCCTTCTTCCCAATTCTCCCCCCAAAAATCTCAATCCCAATCCACCCTAAACCCATCAAACGCTTCACTATGCAGAGGCCTCATGCATCCACCACTGTGCATAGTGCTGTCTCCGGCGCCTTCACCCTGATCCGATCCTCGCCCGCCACGTGGCAGTCGGCAATCCTCAGCAACCTCCTGATCTTCGTTCTGGGCTCCCCGATTTTGGTTTCCGGGCTCTCTCTTTCCGGCATTGCTGCTGCGTTTTTGCTCGGAACTCTCACTTGGCGCGCTTTTGGGCCATCTGGGTTTCTCTTGGTGGCAACCTACTTCATCATTGGCACGGCGGTGACAAAGGTGAGAATGGCACAAAAGGAGGCTGAGGGGGTAGCTGAGAAGAGGAAAGGAAGGAGAGGCCCAGGCAGTGTTATTGGATCCAGTGCTGCTGGTTGCATTTGCGCTTTTCTCACGATATTTCTAGTAGGAGGAAAGCCATATTCCCGGCTCTGGCAACTAGGGTTTGTTGCCAGTTTCTGTACTAAGTTGAGTGATACTGTCTCAAGTGAGGTGGGAAAGGCATATGGGAAAACAACGTACTTGGTAACAACATTGAAGGTAGTTCCAAGGGGAACAGAGGGAGCTGTGAGTCTCGAGGGAACCCTTGCTGGACTTTTGGCATCTGTTCTTCTTGCGTTTGTTGGTTGTCTCATGGGTCAGATAAATGGACCTGAGGCAATTATATGTGTAATAGCTTCCCAAATAGCAAATGTTGGTGAGAGCATTATAGGTGCTGCTCTTCAAGACAAGGAAGGATTTCGATGGCTCAACAATGATGCTGTGAATGTCATAAACATATCCATGGGCAGCATTTTTGCCGTCTTGATGCAGCAGGCATTACTCAAAAACTTACATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF92

Protein Analysis

321

Amino Acids

33.83

Weight (kDa)

10.03

Isoelectric Point (pI)

34.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF92 PF01940 84 - 303 4.4e-59 Integral membrane protein DUF92
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 182
AccBSI CCGCTC 1 cut(s) 66
AccII CGCG 1 cut(s) 336
AciI CCGC 3 cut(s) 64, 210, 392
AclWI GGATC 4 cut(s) 190, 195, 474, 487
AcvI CACGTG 1 cut(s) 216
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 2 cut(s) 583, 641
AfiI CCNNNNNNNGG 3 cut(s) 216, 271, 552
AgsI TTSAA 2 cut(s) 658, 845
AjnI CCWGG 1 cut(s) 463
AjuI GAANNNNNNNTTGG 2 cut(s) 313, 345
AleI CACNNNNGTG 2 cut(s) 161, 392
AluBI AGCT 3 cut(s) 437, 686, 797
AluI AGCT 3 cut(s) 437, 686, 797
Alw26I GTCTC 4 cut(s) 181, 607, 698, 755
AlwI GGATC 4 cut(s) 190, 195, 474, 487
AlwNI CAGNNNCTG 1 cut(s) 579
Ama87I CYCGRG 1 cut(s) 695
AoxI GGCC 3 cut(s) 143, 344, 460
ApeKI GCWGC 6 cut(s) 302, 305, 488, 836, 909, 931
Asp700I GAANNNNTTC 1 cut(s) 858
AspLEI GCGC 4 cut(s) 185, 336, 338, 506
AspS9I GGNCC 3 cut(s) 344, 461, 770
AsuC2I CCSGG 2 cut(s) 280, 547
AsuHPI GGTGA 4 cut(s) 181, 406, 415, 830
AvaI CYCGRG 1 cut(s) 695
AvaII GGWCC 1 cut(s) 770
AxyI CCTNAGG 1 cut(s) 774
BamHI GGATCC 1 cut(s) 479
BanI GGYRCC 1 cut(s) 182
BanII GRGCYC 2 cut(s) 263, 285
BbrPI CACGTG 1 cut(s) 216
BbvCI CCTCAGC 2 cut(s) 233, 426
BbvI GCAGC 6 cut(s) 289, 292, 475, 823, 921, 943
BccI CCATC 3 cut(s) 128, 355, 858
BceAI ACGGC 2 cut(s) 405, 905
BciT130I CCWGG 1 cut(s) 465
BcnI CCSGG 2 cut(s) 280, 547
BcoDI GTCTC 4 cut(s) 181, 607, 698, 755
BfaI CTAG 2 cut(s) 524, 560
BfoI RGCGCY 1 cut(s) 186
BisI GCNGC 6 cut(s) 303, 306, 489, 837, 910, 932
BlsI GCNGC 6 cut(s) 304, 307, 490, 838, 911, 933
Bme1390I CCNGG 3 cut(s) 280, 465, 547
Bme18I GGWCC 1 cut(s) 770
BmeT110I CYCGRG 1 cut(s) 695
BmgT120I GGNCC 3 cut(s) 344, 461, 770
BmiI GGNNCC 4 cut(s) 184, 262, 481, 703
BmrFI CCNGG 3 cut(s) 280, 465, 547
BmsI GCATC 4 cut(s) 161, 731, 868, 918
Bpu10I CCTNAGC 2 cut(s) 233, 426
BpuEI CTTGAG 1 cut(s) 589
BpuMI CCSGG 2 cut(s) 280, 547
BsaAI YACGTR 1 cut(s) 216
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 3 cut(s) 463, 668, 903
Bsc4I CCNNNNNNNGG 3 cut(s) 216, 271, 552
Bse1I ACTGG 2 cut(s) 483, 573
Bse21I CCTNAGG 1 cut(s) 774
Bse3DI GCAATG 1 cut(s) 297
BseBI CCWGG 1 cut(s) 465
BseDI CCNNGG 3 cut(s) 463, 668, 903
BseGI GGATG 1 cut(s) 152
BseLI CCNNNNNNNGG 3 cut(s) 216, 271, 552
BseMI GCAATG 1 cut(s) 297
BseMII CTCAG 4 cut(s) 247, 417, 429, 765
BseNI ACTGG 2 cut(s) 483, 573
BsePI GCGCGC 1 cut(s) 334
BseRI GAGGAG 1 cut(s) 27
BseXI GCAGC 6 cut(s) 289, 292, 475, 823, 921, 943
Bsh1236I CGCG 1 cut(s) 336
BshFI GGCC 3 cut(s) 145, 346, 462
BshNI GGYRCC 1 cut(s) 182
BsiHKCI CYCGRG 1 cut(s) 695
BsiSI CCGG 4 cut(s) 180, 279, 294, 547
BslI CCNNNNNNNGG 3 cut(s) 216, 271, 552
BsmAI GTCTC 4 cut(s) 181, 607, 698, 755
BsnI GGCC 3 cut(s) 145, 346, 462
BsoBI CYCGRG 1 cut(s) 695
Bsp1286I GDGCHC 2 cut(s) 263, 285
Bsp143I GATC 4 cut(s) 195, 200, 246, 479
Bsp19I CCATGG 1 cut(s) 903
BspACI CCGC 3 cut(s) 64, 210, 392
BspANI GGCC 3 cut(s) 145, 346, 462
BspCNI CTCAG 4 cut(s) 246, 418, 430, 766
BspFNI CGCG 1 cut(s) 336
BspLI GGNNCC 4 cut(s) 184, 262, 481, 703
BspPI GGATC 4 cut(s) 190, 195, 474, 487
BspQI GCTCTTC 1 cut(s) 846
BspT107I GGYRCC 1 cut(s) 182
BsrBI CCGCTC 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 297
BsrI ACTGG 2 cut(s) 483, 573
BssECI CCNNGG 3 cut(s) 463, 668, 903
BssHII GCGCGC 1 cut(s) 334
BssMI GATC 4 cut(s) 195, 200, 246, 479
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 2 cut(s) 668, 903
Bst2UI CCWGG 1 cut(s) 465
Bst4CI ACNGT 3 cut(s) 16, 163, 601
Bst6I CTCTTC 2 cut(s) 437, 846
BstACI GRCGYC 1 cut(s) 183
BstBAI YACGTR 1 cut(s) 216
BstC8I GCNNGC 3 cut(s) 210, 336, 936
BstDEI CTNAG 5 cut(s) 233, 426, 438, 585, 774
BstDSI CCRYGG 1 cut(s) 903
BstF5I GGATG 1 cut(s) 152
BstFNI CGCG 1 cut(s) 336
BstH2I RGCGCY 1 cut(s) 186
BstHHI GCGC 4 cut(s) 185, 336, 338, 506
BstKTI GATC 4 cut(s) 198, 203, 249, 482
BstMAI GTCTC 4 cut(s) 181, 607, 698, 755
BstMBI GATC 4 cut(s) 195, 200, 246, 479
BstNI CCWGG 1 cut(s) 465
BstSCI CCNGG 3 cut(s) 278, 463, 545
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 6 cut(s) 289, 292, 475, 823, 921, 943
BstX2I RGATCY 1 cut(s) 479
BstYI RGATCY 1 cut(s) 479
Bsu36I CCTNAGG 1 cut(s) 774
BsuRI GGCC 3 cut(s) 145, 346, 462
BtgI CCRYGG 1 cut(s) 903
BtsCI GGATG 1 cut(s) 152
BtsI GCAGTG 1 cut(s) 475
BtsIMutI CAGTG 3 cut(s) 159, 475, 490
Cac8I GCNNGC 3 cut(s) 210, 336, 936
CaiI CAGNNNCTG 1 cut(s) 579
CfoI GCGC 4 cut(s) 185, 336, 338, 506
Cfr13I GGNCC 3 cut(s) 344, 461, 770
Csp6I GTAC 2 cut(s) 582, 640
CspCI CAANNNNNGTGG 2 cut(s) 594, 629
CviAII CATG 3 cut(s) 149, 754, 904
CviQI GTAC 2 cut(s) 582, 640
DdeI CTNAG 5 cut(s) 233, 426, 438, 585, 774
DinI GGCGCC 1 cut(s) 184
DpnI GATC 4 cut(s) 197, 202, 248, 481
DpnII GATC 4 cut(s) 195, 200, 246, 479
Eam1104I CTCTTC 2 cut(s) 437, 846
EarI CTCTTC 2 cut(s) 437, 846
Eco130I CCWWGG 2 cut(s) 668, 903
Eco147I AGGCCT 1 cut(s) 145
Eco24I GRGCYC 2 cut(s) 263, 285
Eco47I GGWCC 1 cut(s) 770
Eco72I CACGTG 1 cut(s) 216
Eco81I CCTNAGG 1 cut(s) 774
Eco88I CYCGRG 1 cut(s) 695
EcoRII CCWGG 1 cut(s) 463
EcoT14I CCWWGG 2 cut(s) 668, 903
EcoT22I ATGCAT 1 cut(s) 154
EcoT38I GRGCYC 2 cut(s) 263, 285
EgeI GGCGCC 1 cut(s) 184
EheI GGCGCC 1 cut(s) 184
ErhI CCWWGG 2 cut(s) 668, 903
FaeI CATG 3 cut(s) 152, 757, 907
FatI CATG 3 cut(s) 148, 753, 903
FauI CCCGC 1 cut(s) 217
FauNDI CATATG 2 cut(s) 625, 957
Fnu4HI GCNGC 6 cut(s) 303, 306, 489, 837, 910, 932
FokI GGATG 1 cut(s) 139
FriOI GRGCYC 2 cut(s) 263, 285
Fsp4HI GCNGC 6 cut(s) 303, 306, 489, 837, 910, 932
FspBI CTAG 2 cut(s) 524, 560
GlaI GCGC 4 cut(s) 184, 335, 337, 505
GluI GCNGC 6 cut(s) 303, 306, 489, 837, 910, 932
HaeII RGCGCY 1 cut(s) 186
HaeIII GGCC 3 cut(s) 145, 346, 462
HapII CCGG 4 cut(s) 180, 279, 294, 547
HhaI GCGC 4 cut(s) 185, 336, 338, 506
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 3 cut(s) 152, 757, 907
Hin6I GCGC 4 cut(s) 183, 334, 336, 504
HinP1I GCGC 4 cut(s) 183, 334, 336, 504
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 1 cut(s) 691
HpaII CCGG 4 cut(s) 180, 279, 294, 547
HphI GGTGA 4 cut(s) 181, 406, 415, 830
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 3 cut(s) 200, 320, 762
Hpy188III TCNNGA 5 cut(s) 244, 514, 695, 845, 925
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 5 cut(s) 79, 196, 447, 652, 848
HpyCH4III ACNGT 3 cut(s) 16, 163, 601
HpyCH4IV ACGT 2 cut(s) 215, 638
HpyCH4V TGCA 6 cut(s) 22, 139, 152, 166, 498, 931
HpyF3I CTNAG 5 cut(s) 233, 426, 438, 585, 774
HpySE526I ACGT 2 cut(s) 215, 638
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 3 cut(s) 152, 757, 907
HspAI GCGC 4 cut(s) 183, 334, 336, 504
KasI GGCGCC 1 cut(s) 182
Kzo9I GATC 4 cut(s) 195, 200, 246, 479
LguI GCTCTTC 1 cut(s) 846
LmnI GCTCC 3 cut(s) 71, 266, 683
Lsp1109I GCAGC 6 cut(s) 289, 292, 475, 823, 921, 943
LweI GCATC 4 cut(s) 161, 731, 868, 918
MaeI CTAG 2 cut(s) 524, 560
MaeII ACGT 2 cut(s) 215, 638
MaeIII GTNAC 2 cut(s) 394, 646
MalI GATC 4 cut(s) 197, 202, 248, 481
MbiI CCGCTC 1 cut(s) 66
MboI GATC 4 cut(s) 195, 200, 246, 479
MboII GAAGA 5 cut(s) 64, 241, 454, 722, 833
MflI RGATCY 1 cut(s) 479
MhlI GDGCHC 2 cut(s) 263, 285
MluCI AATT 2 cut(s) 78, 780
Mly113I GGCGCC 1 cut(s) 183
MlyI GAGTC 1 cut(s) 700
Mph1103I ATGCAT 1 cut(s) 154
MroXI GAANNNNTTC 1 cut(s) 858
MslI CAYNNNNRTG 3 cut(s) 161, 392, 902
MspI CCGG 4 cut(s) 180, 279, 294, 547
MspR9I CCNGG 3 cut(s) 280, 465, 547
MvaI CCWGG 1 cut(s) 465
MvnI CGCG 1 cut(s) 336
NarI GGCGCC 1 cut(s) 183
NciI CCSGG 2 cut(s) 280, 547
NcoI CCATGG 1 cut(s) 903
NdeI CATATG 2 cut(s) 625, 957
NdeII GATC 4 cut(s) 195, 200, 246, 479
NlaIII CATG 3 cut(s) 152, 757, 907
NlaIV GGNNCC 4 cut(s) 184, 262, 481, 703
NmuCI GTSAC 1 cut(s) 394
NsiI ATGCAT 1 cut(s) 154
OliI CACNNNNGTG 2 cut(s) 161, 392
PaeR7I CTCGAG 1 cut(s) 695
PauI GCGCGC 1 cut(s) 334
PceI AGGCCT 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 846
PcsI WCGNNNNNNNCGW 1 cut(s) 212
PdmI GAANNNNTTC 1 cut(s) 858
PkrI GCNGC 6 cut(s) 304, 307, 490, 838, 911, 933
PleI GAGTC 1 cut(s) 699
PluTI GGCGCC 1 cut(s) 186
PmaCI CACGTG 1 cut(s) 216
PmlI CACGTG 1 cut(s) 216
PpsI GAGTC 1 cut(s) 699
Ppu21I YACGTR 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 463
PspCI CACGTG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 463
PspN4I GGNNCC 4 cut(s) 184, 262, 481, 703
PspPI GGNCC 3 cut(s) 344, 461, 770
PstNI CAGNNNCTG 1 cut(s) 579
PsuI RGATCY 1 cut(s) 479
PteI GCGCGC 1 cut(s) 334
RsaI GTAC 2 cut(s) 583, 641
RsaNI GTAC 2 cut(s) 582, 640
RseI CAYNNNNRTG 3 cut(s) 161, 392, 902
SapI GCTCTTC 1 cut(s) 846
SatI GCNGC 6 cut(s) 303, 306, 489, 837, 910, 932
Sau3AI GATC 4 cut(s) 195, 200, 246, 479
Sau96I GGNCC 3 cut(s) 344, 461, 770
SchI GAGTC 1 cut(s) 700
ScrFI CCNGG 3 cut(s) 280, 465, 547
SduI GDGCHC 2 cut(s) 263, 285
SfaNI GCATC 4 cut(s) 161, 731, 868, 918
SfoI GGCGCC 1 cut(s) 184
Sfr274I CTCGAG 1 cut(s) 695
SinI GGWCC 1 cut(s) 770
SlaI CTCGAG 1 cut(s) 695
SmiMI CAYNNNNRTG 3 cut(s) 161, 392, 902
SmlI CTYRAG 2 cut(s) 604, 695
SmoI CTYRAG 2 cut(s) 604, 695
Sse9I AATT 2 cut(s) 78, 780
SseBI AGGCCT 1 cut(s) 145
SsiI CCGC 3 cut(s) 64, 210, 392
SspDI GGCGCC 1 cut(s) 182
SspMI CTAG 2 cut(s) 524, 560
StuI AGGCCT 1 cut(s) 145
StyD4I CCNGG 3 cut(s) 278, 463, 545
StyI CCWWGG 2 cut(s) 668, 903
TaaI ACNGT 3 cut(s) 16, 163, 601
TaiI ACGT 2 cut(s) 218, 641
TaqI TCGA 2 cut(s) 696, 862
TasI AATT 2 cut(s) 78, 780
TatI WGTACW 1 cut(s) 581
TscAI CASTG 3 cut(s) 166, 475, 490
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 6 cut(s) 302, 305, 488, 836, 909, 931
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 1 cut(s) 367
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 3 cut(s) 166, 475, 490
VpaK11BI GGWCC 1 cut(s) 770
XhoI CTCGAG 1 cut(s) 695
XmnI GAANNNNTTC 1 cut(s) 858
XspI CTAG 2 cut(s) 524, 560
Zsp2I ATGCAT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.