AT1G80245

gamma-tubulin binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002942
Physical Location & Seq
Forward (+)
30174101 .. 30175553
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80245.2

Sequence Viewer

Length: 384 bp
ATGGAGGAATTAACCCAAATCTTGAAGAACAATAGGACAGATGATCTCACTTGGTTTTGCTCTCTCTCTGAATCTGAACTGGATTTGCTCATCAGCTTAAAGAAGCTAGCCATTCAACGCGCCAAAATAAGTGGTCACCAAGAACTAGCTGACAAATTTGATCTTAAGTTGCTCCGATCTCTCGGGCTTGTGCTAATGGAGCACGCGAGGAAAAGGGTACAAAATGATACTTCTCTTGCTCCGAGTGTTGTTCATCAACTCAGGCTTTTGGATAACTGCAATTTGTTGAAAACGCATGTAGATGATGCTGTAGACATTGAGGAGATTCTGACTCAAATCTGCGACAACAAATCAAAAAAGAAAGCACGGAAAAGGAGGCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.69

Weight (kDa)

9.07

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 312
AccII CGCG 2 cut(s) 120, 206
AciI CCGC 1 cut(s) 379
AcsI RAATTY 1 cut(s) 155
AfaI GTAC 1 cut(s) 219
AflII CTTAAG 1 cut(s) 164
AgsI TTSAA 3 cut(s) 25, 116, 289
AluBI AGCT 3 cut(s) 96, 106, 149
AluI AGCT 3 cut(s) 96, 106, 149
Alw21I GWGCWC 1 cut(s) 204
Ama87I CYCGRG 1 cut(s) 182
ApoI RAATTY 1 cut(s) 155
AspLEI GCGC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 128
AsuNHI GCTAGC 1 cut(s) 106
AvaI CYCGRG 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 204
BfaI CTAG 2 cut(s) 107, 146
BfmI CTRYAG 1 cut(s) 309
BfrI CTTAAG 1 cut(s) 164
BmeT110I CYCGRG 1 cut(s) 182
BmsI GCATC 1 cut(s) 295
BmtI GCTAGC 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 335
Bsh1236I CGCG 2 cut(s) 120, 206
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 3 cut(s) 43, 160, 176
BspACI CCGC 1 cut(s) 379
BspCNI CTCAG 1 cut(s) 273
BspFNI CGCG 2 cut(s) 120, 206
BspOI GCTAGC 1 cut(s) 110
BspTI CTTAAG 1 cut(s) 164
BsrI ACTGG 1 cut(s) 84
BssMI GATC 3 cut(s) 43, 160, 176
BstAFI CTTAAG 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 108, 204
BstDEI CTNAG 1 cut(s) 260
BstEII GGTNACC 1 cut(s) 134
BstFNI CGCG 2 cut(s) 120, 206
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 3 cut(s) 46, 163, 179
BstMBI GATC 3 cut(s) 43, 160, 176
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstNSI RCATGY 1 cut(s) 299
BstPI GGTNACC 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 309
BstUI CGCG 2 cut(s) 120, 206
Cac8I GCNNGC 2 cut(s) 108, 204
CfoI GCGC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 218
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 1 cut(s) 296
CviJI RGCY 6 cut(s) 96, 106, 110, 149, 187, 265
CviKI_1 RGCY 6 cut(s) 96, 106, 110, 149, 187, 265
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 1 cut(s) 260
DpnI GATC 3 cut(s) 45, 162, 178
DpnII GATC 3 cut(s) 43, 160, 176
Eco88I CYCGRG 1 cut(s) 182
Eco91I GGTNACC 1 cut(s) 134
EcoO65I GGTNACC 1 cut(s) 134
FaeI CATG 1 cut(s) 299
FaiI YATR 1 cut(s) 297
FatI CATG 1 cut(s) 295
FblI GTMKAC 1 cut(s) 312
FspBI CTAG 2 cut(s) 107, 146
GlaI GCGC 1 cut(s) 121
HhaI GCGC 1 cut(s) 122
Hin1II CATG 1 cut(s) 299
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HinfI GANTC 3 cut(s) 71, 325, 331
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 5 cut(s) 70, 76, 176, 243, 330
Hpy188III TCNNGA 1 cut(s) 22
Hpy8I GTNNAC 1 cut(s) 313
HpyCH4V TGCA 1 cut(s) 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
HpyF3I CTNAG 1 cut(s) 260
Hsp92II CATG 1 cut(s) 299
HspAI GCGC 1 cut(s) 120
Kzo9I GATC 3 cut(s) 43, 160, 176
LmnI GCTCC 3 cut(s) 177, 199, 244
LpnPI CCDG 2 cut(s) 65, 247
LweI GCATC 1 cut(s) 295
MaeI CTAG 2 cut(s) 107, 146
MaeIII GTNAC 1 cut(s) 134
MalI GATC 3 cut(s) 45, 162, 178
MboI GATC 3 cut(s) 43, 160, 176
MboII GAAGA 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 3 cut(s) 8, 155, 280
MlyI GAGTC 1 cut(s) 325
MnlI CCTC 3 cut(s) 201, 313, 369
MseI TTAA 3 cut(s) 11, 98, 165
MslI CAYNNNNRTG 1 cut(s) 300
MspCI CTTAAG 1 cut(s) 164
MvnI CGCG 2 cut(s) 120, 206
MwoI GCNNNNNNNGC 1 cut(s) 199
NdeII GATC 3 cut(s) 43, 160, 176
NheI GCTAGC 1 cut(s) 106
NlaIII CATG 1 cut(s) 299
NmuCI GTSAC 1 cut(s) 134
NspI RCATGY 1 cut(s) 299
PfeI GAWTC 2 cut(s) 71, 325
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PspEI GGTNACC 1 cut(s) 134
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 3 cut(s) 11, 98, 165
Sau3AI GATC 3 cut(s) 43, 160, 176
SchI GAGTC 1 cut(s) 325
SduI GDGCHC 1 cut(s) 204
SetI ASST 3 cut(s) 98, 108, 151
SfaNI GCATC 1 cut(s) 295
SfcI CTRYAG 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 3 cut(s) 8, 155, 280
SsiI CCGC 1 cut(s) 379
SspMI CTAG 2 cut(s) 107, 146
TasI AATT 3 cut(s) 8, 155, 280
TfiI GAWTC 2 cut(s) 71, 325
Tru1I TTAA 3 cut(s) 11, 98, 165
Tru9I TTAA 3 cut(s) 11, 98, 165
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 242
TspGWI ACGGA 1 cut(s) 382
Vha464I CTTAAG 1 cut(s) 164
XapI RAATTY 1 cut(s) 155
XceI RCATGY 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 312
XspI CTAG 2 cut(s) 107, 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.