Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002942

Physical Location & Seq

Genomic Coordinates Reverse (-)

5473266 .. 5476448

Gene Structure 3183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G105800.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAAGGGATTTTAGGGCAGAACAGGCTTGAAGATGTGAGTTGGCTTTGCTCCCTCTCCGAGTCCGAGCTTGACATGTTGATTAGCCTAAAAAGCATTGTTCTTCAACGTGCAAGAATGATTGGGCATGAGGAACTAGCCAACAATTTTGATCTCAAGATGCTTCGAGCTCTTGCATTTGTTCTTATGGAATGTATCAGAGATAAGGTGAAGGATTTGACACTGGCCGAATCTGCTGCATTTATGGAAAGTTGCAATCTATTAAAATACAACCTTGGTGATATTATGAGTCTTGAAGAGATAAGGGCATGTATTGGGATCAATTCGAGAAAGGGTCCAATAAAAAGCACCCATCATTCTTGGAACACTAATCCTTCCCATAGTTGGCATAAACATGATGTTTCTTTACTTTTCCAGAAGTGTTCTTTCCTGCCAAAAAGACATGCAAAGGTTTTCAAAGGTCAAAAATGTGTTGCACATATGCAATGCATCAGGTATTACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

19.34

Weight (kDa)

8.69

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80245 AT1G80245 AT1G80245 AT1G80245 AT1G80245 AT1G80245 AT1G80245 AT4G00695 AT4G00695 AT4G00695 AT4G00695 AT4G00695
fragaria_vesca	FvH4_3g11820 FvH4_3g11820
malus_domestica	MD05G1258900.v1.1 MD10G1238500.v1.1
prunus_persica	Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1
pyrus_communis	pycom05g24350 pycom10g19950
rosa_chinensis	RchiOBHm_Chr5g0019241
rosa_laevigata	RLG00000032431
rosa_multiflora	Rmu_sc0002561.1_g000006
rosa_roxburghii	Rroxscaffold_1G00058750 Rroxscaffold_1G00074190
rosa_rugosa	Rorug05G0048600 Rorug05G0048700 Rorug05G0048800 Rorug05G0048900
rosa_samantha	Rh5AG140000 Rh5BG139000 Rh5CG150400 Rh5DG139600
rosa_wichuraiana	Rw5G012450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	326
AcoI	YGGCCR	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	384
AflIII	ACRYGT	1 cut(s)	75
AgsI	TTSAA	4 cut(s)	32, 107, 296, 457
AluBI	AGCT	2 cut(s)	70, 170
AluI	AGCT	2 cut(s)	70, 170
Alw21I	GWGCWC	1 cut(s)	172
AlwI	GGATC	1 cut(s)	326
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	335
AsuHPI	GGTGA	2 cut(s)	220, 290
AvaII	GGWCC	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	1 cut(s)	360
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BfaI	CTAG	1 cut(s)	137
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	1 cut(s)	336
BmsI	GCATC	2 cut(s)	150, 498
BpuEI	CTTGAG	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
Bse1I	ACTGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	491
BseDI	CCNNGG	1 cut(s)	274
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMI	GCAATG	1 cut(s)	491
BseNI	ACTGG	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	223
BshFI	GGCC	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	384
BsnI	GGCC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	2 cut(s)	151, 318
BspANI	GGCC	1 cut(s)	227
BspLI	GGNNCC	1 cut(s)	336
BspPI	GGATC	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	491
BsrI	ACTGG	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	274
BssMI	GATC	2 cut(s)	151, 318
BssT1I	CCWWGG	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	291
BstKTI	GATC	2 cut(s)	154, 321
BstMBI	GATC	2 cut(s)	151, 318
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 93, 233
BstNSI	RCATGY	3 cut(s)	79, 312, 446
BstV1I	GCAGC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	335
CviAII	CATG	5 cut(s)	76, 128, 309, 395, 443
CviJI	RGCY	7 cut(s)	28, 46, 70, 87, 140, 170, 227
CviKI_1	RGCY	7 cut(s)	28, 46, 70, 87, 140, 170, 227
DpnI	GATC	2 cut(s)	153, 320
DpnII	GATC	2 cut(s)	151, 318
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	335
Eco53kI	GAGCTC	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	274
EcoT22I	ATGCAT	1 cut(s)	491
EcoT38I	GRGCYC	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	274
FaeI	CATG	5 cut(s)	79, 131, 312, 398, 446
FatI	CATG	5 cut(s)	75, 127, 308, 394, 442
FauNDI	CATATG	1 cut(s)	480
Fnu4HI	GCNGC	1 cut(s)	237
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	227
Hin1II	CATG	5 cut(s)	79, 131, 312, 398, 446
HinfI	GANTC	3 cut(s)	62, 230, 289
HphI	GGTGA	2 cut(s)	220, 290
Hpy188I	TCNGA	3 cut(s)	61, 67, 200
Hpy188III	TCNNGA	4 cut(s)	157, 293, 327, 415
HpyAV	CCTTC	2 cut(s)	205, 384
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	8 cut(s)	113, 176, 239, 255, 446, 476, 484, 489
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 93, 233
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	5 cut(s)	79, 131, 312, 398, 446
Kzo9I	GATC	2 cut(s)	151, 318
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	5 cut(s)	10, 209, 428, 443, 478
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	2 cut(s)	150, 498
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	1 cut(s)	109
MalI	GATC	2 cut(s)	153, 320
MboI	GATC	2 cut(s)	151, 318
MboII	GAAGA	3 cut(s)	44, 95, 308
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	2 cut(s)	145, 322
MlyI	GAGTC	2 cut(s)	71, 298
MnlI	CCTC	2 cut(s)	65, 124
Mph1103I	ATGCAT	1 cut(s)	491
MseI	TTAA	1 cut(s)	263
MslI	CAYNNNNRTG	1 cut(s)	393
MwoI	GCNNNNNNNGC	3 cut(s)	25, 93, 233
NdeI	CATATG	1 cut(s)	480
NdeII	GATC	2 cut(s)	151, 318
NlaIII	CATG	5 cut(s)	79, 131, 312, 398, 446
NlaIV	GGNNCC	1 cut(s)	336
NsiI	ATGCAT	1 cut(s)	491
NspI	RCATGY	3 cut(s)	79, 312, 446
PciI	ACATGT	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	238
PleI	GAGTC	2 cut(s)	70, 297
PpsI	GAGTC	2 cut(s)	70, 297
PscI	ACATGT	1 cut(s)	75
Psp124BI	GAGCTC	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	336
PspPI	GGNCC	1 cut(s)	335
RseI	CAYNNNNRTG	1 cut(s)	393
SacI	GAGCTC	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	2 cut(s)	151, 318
Sau96I	GGNCC	1 cut(s)	335
SchI	GAGTC	2 cut(s)	71, 298
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	8 cut(s)	72, 112, 172, 210, 276, 453, 463, 497
SfaNI	GCATC	2 cut(s)	150, 498
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	2 cut(s)	145, 322
SspMI	CTAG	1 cut(s)	137
SstI	GAGCTC	1 cut(s)	172
StyI	CCWWGG	1 cut(s)	274
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	2 cut(s)	166, 326
TasI	AATT	2 cut(s)	145, 322
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	1 cut(s)	228
TseI	GCWGC	1 cut(s)	236
TspRI	CASTG	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	335
XceI	RCATGY	3 cut(s)	79, 312, 446
XspI	CTAG	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.