Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002942

Physical Location & Seq

Genomic Coordinates Reverse (-)

13809672 .. 13813270

Gene Structure 3599 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG150400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGACCCAAATTTAGGGCAGAACAGACTTGAAGATGTCAGCTGGCTCTGTTCCCTCTCTGAGTCTGAGCTTGATTTGCTGATCAGCTTAAAGAAGCTTGTTCTCCAAAGGGCAGGCGTGATTGGGCATGAAGAACTAGCTGTCAAGTTTGATCTCAAGGTGCTTAGAGCTCTTGCGTTTGTTCTGATGACGTGTATCAAAGATAAGGTTAAGGATTTGTCACTTGTTCCGGGCTTTGAAGACTCTGCTGCATTTATGGAAAGTTGCAATCTATTGAAATGTGACCTTGGTGACGTTATGAGTCTTGAAGAGATAAAGGCATGCATTGGTATTCATTTGAGAAAGGAAGCAAGTAAAAGGTTAGTTGAGGCTGCAAGTAATACTTCTTTGTTTTGTACAGACAATAACTTGCTTGCAGAATACAGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.88

Weight (kDa)

5.07

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80245 AT1G80245 AT1G80245 AT1G80245 AT1G80245 AT1G80245 AT1G80245 AT4G00695 AT4G00695 AT4G00695 AT4G00695 AT4G00695
fragaria_vesca	FvH4_3g11820 FvH4_3g11820
malus_domestica	MD05G1258900.v1.1 MD10G1238500.v1.1
prunus_persica	Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1
pyrus_communis	pycom05g24350 pycom10g19950
rosa_chinensis	RchiOBHm_Chr5g0019241
rosa_laevigata	RLG00000032431
rosa_multiflora	Rmu_sc0002561.1_g000006
rosa_roxburghii	Rroxscaffold_1G00058750 Rroxscaffold_1G00074190
rosa_rugosa	Rorug05G0048600 Rorug05G0048700 Rorug05G0048800 Rorug05G0048900
rosa_samantha	Rh5AG140000 Rh5BG139000 Rh5CG150400 Rh5DG139600
rosa_wichuraiana	Rw5G012450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	10
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	1 cut(s)	14
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	4 cut(s)	32, 239, 277, 308
AjiI	CACGTC	1 cut(s)	192
AluBI	AGCT	7 cut(s)	42, 70, 87, 97, 140, 170, 429
AluI	AGCT	7 cut(s)	42, 70, 87, 97, 140, 170, 429
Alw21I	GWGCWC	1 cut(s)	172
ApeKI	GCWGC	2 cut(s)	248, 371
ApoI	RAATTY	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	172
BbvI	GCAGC	2 cut(s)	235, 358
BclI	TGATCA	1 cut(s)	81
BcnI	CCSGG	1 cut(s)	231
BfaI	CTAG	2 cut(s)	137, 430
BisI	GCNGC	2 cut(s)	249, 372
BlsI	GCNGC	2 cut(s)	250, 373
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	4
BmgBI	CACGTC	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	286
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	2 cut(s)	51, 57
BseXI	GCAGC	2 cut(s)	235, 358
BsiHKAI	GWGCWC	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp1407I	TGTACA	1 cut(s)	395
Bsp143I	GATC	2 cut(s)	81, 151
BspCNI	CTCAG	2 cut(s)	52, 58
BspLI	GGNNCC	1 cut(s)	6
BsrGI	TGTACA	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	2 cut(s)	81, 151
BssT1I	CCWWGG	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	303
BstAUI	TGTACA	1 cut(s)	395
BstC8I	GCNNGC	4 cut(s)	44, 115, 322, 414
BstDEI	CTNAG	3 cut(s)	60, 66, 164
BstKTI	GATC	2 cut(s)	84, 154
BstMBI	GATC	2 cut(s)	81, 151
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNSI	RCATGY	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	229
BstV1I	GCAGC	2 cut(s)	235, 358
BstV2I	GAAGAC	1 cut(s)	246
BtrI	CACGTC	1 cut(s)	192
Cac8I	GCNNGC	4 cut(s)	44, 115, 322, 414
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	396
CviAII	CATG	2 cut(s)	128, 321
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	3 cut(s)	60, 66, 164
DpnI	GATC	2 cut(s)	83, 153
DpnII	GATC	2 cut(s)	81, 151
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Ecl136II	GAGCTC	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	286
EcoT22I	ATGCAT	1 cut(s)	326
EcoT38I	GRGCYC	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	2 cut(s)	131, 324
FaiI	YATR	4 cut(s)	129, 257, 299, 322
FalI	AAGNNNNNCTT	2 cut(s)	367, 399
FatI	CATG	2 cut(s)	127, 320
FbaI	TGATCA	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	249, 372
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	2 cut(s)	249, 372
FspBI	CTAG	2 cut(s)	137, 430
GluI	GCNGC	2 cut(s)	249, 372
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	2 cut(s)	131, 324
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	3 cut(s)	62, 242, 301
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	302
Hpy188I	TCNGA	3 cut(s)	61, 67, 186
Hpy188III	TCNNGA	1 cut(s)	305
HpyCH4IV	ACGT	2 cut(s)	191, 294
HpyCH4V	TGCA	5 cut(s)	251, 267, 324, 374, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	3 cut(s)	60, 66, 164
HpySE526I	ACGT	2 cut(s)	191, 294
Hsp92II	CATG	2 cut(s)	131, 324
Ksp22I	TGATCA	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	81, 151
LpnPI	CCDG	3 cut(s)	28, 99, 243
Lsp1109I	GCAGC	2 cut(s)	235, 358
MaeI	CTAG	2 cut(s)	137, 430
MaeII	ACGT	2 cut(s)	191, 294
MaeIII	GTNAC	3 cut(s)	219, 281, 290
MalI	GATC	2 cut(s)	83, 153
MboI	GATC	2 cut(s)	81, 151
MboII	GAAGA	4 cut(s)	44, 143, 251, 320
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	1 cut(s)	10
MlyI	GAGTC	3 cut(s)	71, 236, 310
MnlI	CCTC	2 cut(s)	65, 361
Mph1103I	ATGCAT	1 cut(s)	326
MseI	TTAA	2 cut(s)	89, 210
MspA1I	CMGCKG	1 cut(s)	42
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	76
NciI	CCSGG	1 cut(s)	231
NdeII	GATC	2 cut(s)	81, 151
NlaIII	CATG	2 cut(s)	131, 324
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	3 cut(s)	219, 281, 290
NsiI	ATGCAT	1 cut(s)	326
NspI	RCATGY	1 cut(s)	324
PaeI	GCATGC	1 cut(s)	324
PkrI	GCNGC	2 cut(s)	250, 373
PleI	GAGTC	3 cut(s)	70, 236, 309
PpsI	GAGTC	3 cut(s)	70, 236, 309
Psp124BI	GAGCTC	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	42
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
SacI	GAGCTC	1 cut(s)	172
SaqAI	TTAA	2 cut(s)	89, 210
SatI	GCNGC	2 cut(s)	249, 372
Sau3AI	GATC	2 cut(s)	81, 151
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	3 cut(s)	71, 236, 310
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	172
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SphI	GCATGC	1 cut(s)	324
Sse9I	AATT	1 cut(s)	10
SspMI	CTAG	2 cut(s)	137, 430
SstI	GAGCTC	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	286
TaiI	ACGT	2 cut(s)	194, 297
TasI	AATT	1 cut(s)	10
TatI	WGTACW	1 cut(s)	395
Tru1I	TTAA	2 cut(s)	89, 210
Tru9I	TTAA	2 cut(s)	89, 210
TseFI	GTSAC	3 cut(s)	219, 281, 290
TseI	GCWGC	2 cut(s)	248, 371
Tsp45I	GTSAC	3 cut(s)	219, 281, 290
TspDTI	ATGAA	2 cut(s)	144, 323
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	1 cut(s)	324
XspI	CTAG	2 cut(s)	137, 430
Zsp2I	ATGCAT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.