Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002942

Physical Location & Seq

Genomic Coordinates Reverse (-)

15102225 .. 15104468

Gene Structure 2244 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032431

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGACCCAAATTTAGAGCAGAACAGAGTTGAAGATGTCAGCTGGCTCTGTTCCCTCTCTGAGTCTGAGCTTGATTTGCTGATCAGCTTAAAGAAGCTTGTTCTCCAAAGGGCACGAGTGATTGGGCATGAAGAACTAGCAGTCAAGTTTGATCTCAAGGTGCTTAGAGCTCTTGCGTTTGTTCTGCTGACGTGTATCAAAGATAAGGTTAAGGATTTGTCACTTGTTCCAGGCTTTGAAGACTCTGCTGCATTTATGGAAAGTTGCAATCTATTGAAATGTGACCTTGGTGACGTTATGAGTCTTGAAGAGATAAAGGCATGCATCGGTATTCATTTGAGAAAGGCAGCAAGTAAAAGATTCTGTAACAGTATAGCACTGAATGAAACCATGCTAAGTCAGAAGAAACAAAAATTTGGATCCAGCGGAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

16.04

Weight (kDa)

6.72

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80245 AT1G80245 AT1G80245 AT1G80245 AT1G80245 AT1G80245 AT1G80245 AT4G00695 AT4G00695 AT4G00695 AT4G00695 AT4G00695
fragaria_vesca	FvH4_3g11820 FvH4_3g11820
malus_domestica	MD05G1258900.v1.1 MD10G1238500.v1.1
prunus_persica	Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1
pyrus_communis	pycom05g24350 pycom10g19950
rosa_chinensis	RchiOBHm_Chr5g0019241
rosa_laevigata	RLG00000032431
rosa_multiflora	Rmu_sc0002561.1_g000006
rosa_roxburghii	Rroxscaffold_1G00058750 Rroxscaffold_1G00074190
rosa_rugosa	Rorug05G0048600 Rorug05G0048700 Rorug05G0048800 Rorug05G0048900
rosa_samantha	Rh5AG140000 Rh5BG139000 Rh5CG150400 Rh5DG139600
rosa_wichuraiana	Rw5G012450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	426
AclWI	GGATC	2 cut(s)	414, 427
AcsI	RAATTY	2 cut(s)	10, 413
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	4 cut(s)	32, 239, 277, 308
AjiI	CACGTC	1 cut(s)	192
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	5 cut(s)	42, 70, 87, 97, 170
AluI	AGCT	5 cut(s)	42, 70, 87, 97, 170
Alw21I	GWGCWC	1 cut(s)	172
AlwI	GGATC	2 cut(s)	414, 427
ApeKI	GCWGC	2 cut(s)	248, 347
ApoI	RAATTY	2 cut(s)	10, 413
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	115
BamHI	GGATCC	1 cut(s)	419
BanII	GRGCYC	1 cut(s)	172
BauI	CACGAG	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	172
BbvI	GCAGC	2 cut(s)	235, 359
BciT130I	CCWGG	1 cut(s)	231
BclI	TGATCA	1 cut(s)	81
BfaI	CTAG	1 cut(s)	137
BisI	GCNGC	2 cut(s)	249, 348
BlsI	GCNGC	2 cut(s)	250, 349
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	4
BmgBI	CACGTC	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	6, 421
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	1 cut(s)	333
BpiI	GAAGAC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	286
BseMII	CTCAG	2 cut(s)	51, 57
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	235, 359
BsiHKAI	GWGCWC	1 cut(s)	172
Bsp1286I	GDGCHC	2 cut(s)	115, 172
Bsp143I	GATC	3 cut(s)	81, 151, 419
BspACI	CCGC	1 cut(s)	426
BspCNI	CTCAG	2 cut(s)	52, 58
BspLI	GGNNCC	2 cut(s)	6, 421
BspPI	GGATC	2 cut(s)	414, 427
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	3 cut(s)	81, 151, 419
BssSI	CACGAG	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	286
Bst2BI	CACGAG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	371
Bst6I	CTCTTC	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	44, 322
BstDEI	CTNAG	4 cut(s)	60, 66, 164, 395
BstKTI	GATC	3 cut(s)	84, 154, 422
BstMBI	GATC	3 cut(s)	81, 151, 419
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	229
BstSLI	GKGCMC	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	235, 359
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	419
BtrI	CACGTC	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	377
Cac8I	GCNNGC	2 cut(s)	44, 322
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	3 cut(s)	128, 321, 391
CviJI	RGCY	7 cut(s)	42, 46, 70, 87, 97, 170, 234
CviKI_1	RGCY	7 cut(s)	42, 46, 70, 87, 97, 170, 234
DdeI	CTNAG	4 cut(s)	60, 66, 164, 395
DpnI	GATC	3 cut(s)	83, 153, 421
DpnII	GATC	3 cut(s)	81, 151, 419
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Ecl136II	GAGCTC	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	286
EcoT22I	ATGCAT	1 cut(s)	326
EcoT38I	GRGCYC	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	3 cut(s)	131, 324, 394
FaiI	YATR	7 cut(s)	129, 257, 299, 322, 374, 392, 433
FatI	CATG	3 cut(s)	127, 320, 390
FbaI	TGATCA	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	249, 348
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	2 cut(s)	249, 348
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	2 cut(s)	249, 348
Hin1II	CATG	3 cut(s)	131, 324, 394
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	4 cut(s)	62, 242, 301, 360
HphI	GGTGA	1 cut(s)	302
Hpy188I	TCNGA	3 cut(s)	61, 67, 402
Hpy188III	TCNNGA	1 cut(s)	305
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	2 cut(s)	191, 294
HpyCH4V	TGCA	3 cut(s)	251, 267, 324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	4 cut(s)	60, 66, 164, 395
HpySE526I	ACGT	2 cut(s)	191, 294
Hsp92II	CATG	3 cut(s)	131, 324, 394
Ksp22I	TGATCA	1 cut(s)	81
Kzo9I	GATC	3 cut(s)	81, 151, 419
LpnPI	CCDG	3 cut(s)	28, 216, 243
Lsp1109I	GCAGC	2 cut(s)	235, 359
LweI	GCATC	1 cut(s)	333
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	2 cut(s)	191, 294
MaeIII	GTNAC	4 cut(s)	219, 281, 290, 365
MalI	GATC	3 cut(s)	83, 153, 421
MboI	GATC	3 cut(s)	81, 151, 419
MboII	GAAGA	5 cut(s)	44, 143, 251, 320, 415
MflI	RGATCY	1 cut(s)	419
MhlI	GDGCHC	2 cut(s)	115, 172
MluCI	AATT	2 cut(s)	10, 413
MlyI	GAGTC	3 cut(s)	71, 236, 310
MnlI	CCTC	1 cut(s)	65
Mph1103I	ATGCAT	1 cut(s)	326
MseI	TTAA	2 cut(s)	89, 210
MspA1I	CMGCKG	2 cut(s)	42, 426
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	76
NdeII	GATC	3 cut(s)	81, 151, 419
NlaIII	CATG	3 cut(s)	131, 324, 394
NlaIV	GGNNCC	2 cut(s)	6, 421
NmuCI	GTSAC	3 cut(s)	219, 281, 290
NsiI	ATGCAT	1 cut(s)	326
NspI	RCATGY	1 cut(s)	324
PaeI	GCATGC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	360
PkrI	GCNGC	2 cut(s)	250, 349
PleI	GAGTC	3 cut(s)	70, 236, 309
PpsI	GAGTC	3 cut(s)	70, 236, 309
Psp124BI	GAGCTC	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	2 cut(s)	6, 421
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	419
PvuII	CAGCTG	1 cut(s)	42
SacI	GAGCTC	1 cut(s)	172
SaqAI	TTAA	2 cut(s)	89, 210
SatI	GCNGC	2 cut(s)	249, 348
Sau3AI	GATC	3 cut(s)	81, 151, 419
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	3 cut(s)	71, 236, 310
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	2 cut(s)	115, 172
SfaNI	GCATC	1 cut(s)	333
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SphI	GCATGC	1 cut(s)	324
Sse9I	AATT	2 cut(s)	10, 413
SsiI	CCGC	1 cut(s)	426
SspMI	CTAG	1 cut(s)	137
SstI	GAGCTC	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	2 cut(s)	194, 297
TasI	AATT	2 cut(s)	10, 413
TfiI	GAWTC	1 cut(s)	360
Tru1I	TTAA	2 cut(s)	89, 210
Tru9I	TTAA	2 cut(s)	89, 210
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	3 cut(s)	219, 281, 290
TseI	GCWGC	2 cut(s)	248, 347
Tsp45I	GTSAC	3 cut(s)	219, 281, 290
TspDTI	ATGAA	3 cut(s)	144, 323, 399
TspRI	CASTG	1 cut(s)	384
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	10, 413
XceI	RCATGY	1 cut(s)	324
XspI	CTAG	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.