Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002942

Physical Location & Seq

Genomic Coordinates Forward (+)

25914242 .. 25917024

Gene Structure 2783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g24350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAAGGGATATTAGGGCAGAACAGGGTTGACGATGTGAGCTGGCTCTGCTCGCTCTCTGAGTCCGAACTTGACATGTTGATTAGCATAAAAAGGATTGTTCTTCATCGTGCAAGGATGATTGGGTGCGATGAACTTGCTCAAAAGTTTGATCTCAAGGTGCTTCGAGCTCTTGCATTTGTTCTGATGGAATGCATCAAAGATAAGGTAAAGGATTTGGCACCGCCAGAATCTGCTGCATTTATGGGAAGTTGCAATCTATTAAAACGTAACCTTGGTGATATTATGAGTCTTGAACAGATAATGGCTTGTATTGGTATTGATTCGAGAAAGGGTCCAATAAAAAGAAGACCGCACAAAGAAACTAAGCGAAATCAAAAGAAACAGAAAACTGAAGCCAGTGAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.4

Weight (kDa)

9.04

Isoelectric Point (pI)

56.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80245 AT1G80245 AT1G80245 AT1G80245 AT1G80245 AT1G80245 AT1G80245 AT4G00695 AT4G00695 AT4G00695 AT4G00695 AT4G00695
fragaria_vesca	FvH4_3g11820 FvH4_3g11820
malus_domestica	MD05G1258900.v1.1 MD10G1238500.v1.1
prunus_persica	Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1 Prupe.4G105800_v2.0.a1
pyrus_communis	pycom05g24350 pycom10g19950
rosa_chinensis	RchiOBHm_Chr5g0019241
rosa_laevigata	RLG00000032431
rosa_multiflora	Rmu_sc0002561.1_g000006
rosa_roxburghii	Rroxscaffold_1G00058750 Rroxscaffold_1G00074190
rosa_rugosa	Rorug05G0048600 Rorug05G0048700 Rorug05G0048800 Rorug05G0048900
rosa_samantha	Rh5AG140000 Rh5BG139000 Rh5CG150400 Rh5DG139600
rosa_wichuraiana	Rw5G012450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	220
AciI	CCGC	2 cut(s)	224, 353
AflIII	ACRYGT	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	296
AluBI	AGCT	2 cut(s)	42, 170
AluI	AGCT	2 cut(s)	42, 170
Alw21I	GWGCWC	1 cut(s)	172
AlwNI	CAGNNNCTG	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	1 cut(s)	181
BcgI	CGANNNNNNTGC	2 cut(s)	119, 153
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	2 cut(s)	222, 336
BmsI	GCATC	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	355
BpuEI	CTTGAG	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	274
BseGI	GGATG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	399
BseXI	GCAGC	1 cut(s)	223
BshNI	GGYRCC	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	172
BsmI	GAATGC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	2 cut(s)	224, 353
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	222, 336
BspT107I	GGYRCC	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	399
BssECI	CCNNGG	1 cut(s)	274
BssMI	GATC	1 cut(s)	151
BssT1I	CCWWGG	1 cut(s)	274
BstC8I	GCNNGC	2 cut(s)	44, 53
BstDEI	CTNAG	2 cut(s)	60, 366
BstF5I	GGATG	1 cut(s)	123
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 52
BstNSI	RCATGY	1 cut(s)	79
BstV1I	GCAGC	1 cut(s)	223
BstV2I	GAAGAC	1 cut(s)	355
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	406
Cac8I	GCNNGC	2 cut(s)	44, 53
CaiI	CAGNNNCTG	1 cut(s)	233
Cfr13I	GGNCC	1 cut(s)	335
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	5 cut(s)	42, 46, 170, 308, 398
CviKI_1	RGCY	5 cut(s)	42, 46, 170, 308, 398
DdeI	CTNAG	2 cut(s)	60, 366
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	335
Eco53kI	GAGCTC	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	274
EcoT22I	ATGCAT	1 cut(s)	197
EcoT38I	GRGCYC	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	274
FaeI	CATG	1 cut(s)	79
FaiI	YATR	5 cut(s)	77, 89, 245, 287, 409
FatI	CATG	1 cut(s)	75
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	1 cut(s)	130
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	1 cut(s)	237
GluI	GCNGC	1 cut(s)	237
Hin1II	CATG	1 cut(s)	79
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	4 cut(s)	62, 230, 289, 323
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	3 cut(s)	61, 67, 186
Hpy188III	TCNNGA	2 cut(s)	293, 327
Hpy8I	GTNNAC	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	5 cut(s)	113, 176, 195, 239, 255
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 52
HpyF3I	CTNAG	2 cut(s)	60, 366
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	151
LpnPI	CCDG	3 cut(s)	10, 28, 240
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	1 cut(s)	204
MaeII	ACGT	1 cut(s)	268
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	2 cut(s)	95, 360
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	1 cut(s)	404
MlyI	GAGTC	2 cut(s)	71, 298
Mph1103I	ATGCAT	1 cut(s)	197
MseI	TTAA	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	48, 52
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	2 cut(s)	222, 336
NsiI	ATGCAT	1 cut(s)	197
NspI	RCATGY	1 cut(s)	79
PciI	ACATGT	1 cut(s)	75
PctI	GAATGC	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	230, 323
PkrI	GCNGC	1 cut(s)	238
PleI	GAGTC	2 cut(s)	70, 297
PpsI	GAGTC	2 cut(s)	70, 297
PscI	ACATGT	1 cut(s)	75
Psp124BI	GAGCTC	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	222, 336
PspPI	GGNCC	1 cut(s)	335
PstNI	CAGNNNCTG	1 cut(s)	233
SacI	GAGCTC	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	151
Sau96I	GGNCC	1 cut(s)	335
SchI	GAGTC	2 cut(s)	71, 298
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	6 cut(s)	44, 162, 172, 210, 271, 276
SfaNI	GCATC	1 cut(s)	204
SinI	GGWCC	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	404
SsiI	CCGC	2 cut(s)	224, 353
SstI	GAGCTC	1 cut(s)	172
StyI	CCWWGG	1 cut(s)	274
TaiI	ACGT	1 cut(s)	271
TaqI	TCGA	2 cut(s)	166, 326
TasI	AATT	1 cut(s)	404
TfiI	GAWTC	2 cut(s)	230, 323
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	1 cut(s)	406
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	95, 147
TspRI	CASTG	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	335
XceI	RCATGY	1 cut(s)	79
Zsp2I	ATGCAT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.