Rorug05G0048800

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002942
Physical Location & Seq
Reverse (-)
4288361 .. 4292134
3774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0048800.1

Sequence Viewer

Length: 696 bp
ATGACTTCACAAAAGTATTTATCAATTTTCAAAAAGGAATCTTCTTCTATCATTGATATGGAACTTAATCGAGAAGAACCAGCTGGCATGGCCTGGGTGGGCCTCATTCTGGACGTTATGTTCTCGATTCTAGAGGTGCTCTTGTTTCCCGGGAAGGGCTTATACTTGGACATTGCCTCGTTTTTTCTATTCTGGTTGTGCGGACAAAATGATGAAGAGGATATGTGCAACGCCTATCTTCAAAAGTTGATCACCTATTCACCTGCTTCTTACTCACCCACTTGCCAGAGACAAGGTCAAAGAATCAAAGAATTAAAGGAGAGGGCTACGAGCGTGCTTAGTCCATGCTGCCTGGTTGGGTCACATGAGCTTTCGCATGATAGTAACCAAACTGCACAAGCCTCTGAAAGTGGTCCTCTACCATTTGTCTCTCTTTTGGAGTTTGTGAGTGGAATTTATCGGAAGGAGCCAGAGCAATTGTCTGGCAATGACGCCTTGTGGACATTTGTGAACTTTGCTGGAGAGGACGATACAAATTTTCAAACTCTTGTGGCTCTCTTGAATATGCTGAGTACCTTGGCTTCTAGTCAAGAAGGTGCTGCAACGGTTTGGGAGTTACTTCAGGGCAAAGTGTTTCGTTCTGTTGGGTGGAGCACCTTGTTTGATAGCTTGTCAATTTATAAAGAGAAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

25.86

Weight (kDa)

4.65

Isoelectric Point (pI)

37.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 681
AarI CACCTGC 1 cut(s) 271
Acc36I ACCTGC 1 cut(s) 271
AciI CCGC 1 cut(s) 201
AcsI RAATTY 2 cut(s) 453, 535
AcuI CTGAAG 1 cut(s) 605
AcyI GRCGYC 1 cut(s) 492
AfaI GTAC 1 cut(s) 574
AfiI CCNNNNNNNGG 2 cut(s) 109, 155
AgsI TTSAA 4 cut(s) 31, 242, 542, 562
AjnI CCWGG 2 cut(s) 92, 351
AloI GAACNNNNNNTCC 2 cut(s) 104, 136
AluBI AGCT 3 cut(s) 83, 370, 669
AluI AGCT 3 cut(s) 83, 370, 669
Alw21I GWGCWC 2 cut(s) 141, 656
Alw26I GTCTC 2 cut(s) 283, 433
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 2 cut(s) 90, 100
ApeKI GCWGC 2 cut(s) 348, 599
ApoI RAATTY 2 cut(s) 453, 535
AspS9I GGNCC 2 cut(s) 100, 413
AsuC2I CCSGG 2 cut(s) 150, 151
AsuHPI GGTGA 3 cut(s) 244, 252, 267
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 1 cut(s) 413
BarI GAAGNNNNNNTAC 4 cut(s) 146, 178, 565, 597
Bbv12I GWGCWC 2 cut(s) 141, 656
BbvI GCAGC 2 cut(s) 335, 586
BciT130I CCWGG 2 cut(s) 94, 353
BclI TGATCA 1 cut(s) 249
BcnI CCSGG 2 cut(s) 150, 151
BcoDI GTCTC 2 cut(s) 283, 433
BfaI CTAG 2 cut(s) 131, 585
BfuAI ACCTGC 1 cut(s) 271
BisI GCNGC 2 cut(s) 349, 600
BlsI GCNGC 2 cut(s) 350, 601
Bme1390I CCNGG 4 cut(s) 94, 150, 151, 353
Bme18I GGWCC 1 cut(s) 413
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 2 cut(s) 100, 413
BmiI GGNNCC 1 cut(s) 468
BmrFI CCNGG 4 cut(s) 94, 150, 151, 353
BpmI CTGGAG 1 cut(s) 540
BpuMI CCSGG 2 cut(s) 150, 151
BsaHI GRCGYC 1 cut(s) 492
BsaJI CCNNGG 3 cut(s) 93, 149, 576
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 155
Bse3DI GCAATG 2 cut(s) 171, 493
BseBI CCWGG 2 cut(s) 94, 353
BseDI CCNNGG 3 cut(s) 93, 149, 576
BseLI CCNNNNNNNGG 2 cut(s) 109, 155
BseMI GCAATG 2 cut(s) 171, 493
BseMII CTCAG 1 cut(s) 560
BseXI GCAGC 2 cut(s) 335, 586
BsgI GTGCAG 1 cut(s) 378
BshFI GGCC 2 cut(s) 92, 102
BsiHKAI GWGCWC 2 cut(s) 141, 656
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 109, 155
BsmAI GTCTC 2 cut(s) 283, 433
BsnI GGCC 2 cut(s) 92, 102
BsoBI CYCGRG 1 cut(s) 149
Bsp1286I GDGCHC 2 cut(s) 141, 656
Bsp143I GATC 1 cut(s) 249
BspACI CCGC 1 cut(s) 201
BspANI GGCC 2 cut(s) 92, 102
BspCNI CTCAG 1 cut(s) 561
BspLI GGNNCC 1 cut(s) 468
BspMI ACCTGC 1 cut(s) 271
BsrDI GCAATG 2 cut(s) 171, 493
BssECI CCNNGG 3 cut(s) 93, 149, 576
BssMI GATC 1 cut(s) 249
BssNI GRCGYC 1 cut(s) 492
BssT1I CCWWGG 1 cut(s) 576
Bst2UI CCWGG 2 cut(s) 94, 353
Bst4CI ACNGT 1 cut(s) 607
Bst6I CTCTTC 1 cut(s) 210
BstACI GRCGYC 1 cut(s) 492
BstC8I GCNNGC 2 cut(s) 85, 335
BstDEI CTNAG 2 cut(s) 338, 569
BstKTI GATC 1 cut(s) 252
BstMAI GTCTC 2 cut(s) 283, 433
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNI CCWGG 2 cut(s) 94, 353
BstSCI CCNGG 4 cut(s) 92, 148, 149, 351
BstV1I GCAGC 2 cut(s) 335, 586
BsuRI GGCC 2 cut(s) 92, 102
BveI ACCTGC 1 cut(s) 271
Cac8I GCNNGC 2 cut(s) 85, 335
Cfr13I GGNCC 2 cut(s) 100, 413
Cfr9I CCCGGG 1 cut(s) 149
CseI GACGC 1 cut(s) 500
Csp6I GTAC 1 cut(s) 573
CviAII CATG 4 cut(s) 88, 345, 365, 377
CviQI GTAC 1 cut(s) 573
DdeI CTNAG 2 cut(s) 338, 569
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 576
Eco47I GGWCC 1 cut(s) 413
Eco57I CTGAAG 1 cut(s) 605
Eco88I CYCGRG 1 cut(s) 149
EcoRII CCWGG 2 cut(s) 92, 351
EcoT14I CCWWGG 1 cut(s) 576
ErhI CCWWGG 1 cut(s) 576
FaeI CATG 4 cut(s) 91, 348, 368, 380
FatI CATG 4 cut(s) 87, 344, 364, 376
FbaI TGATCA 1 cut(s) 249
Fnu4HI GCNGC 2 cut(s) 349, 600
Fsp4HI GCNGC 2 cut(s) 349, 600
FspBI CTAG 2 cut(s) 131, 585
GluI GCNGC 2 cut(s) 349, 600
GsuI CTGGAG 1 cut(s) 540
HaeIII GGCC 2 cut(s) 92, 102
HapII CCGG 1 cut(s) 150
HgaI GACGC 1 cut(s) 500
Hin1I GRCGYC 1 cut(s) 492
Hin1II CATG 4 cut(s) 91, 348, 368, 380
HinfI GANTC 3 cut(s) 38, 127, 303
HpaII CCGG 1 cut(s) 150
HphI GGTGA 3 cut(s) 244, 252, 267
Hpy166II GTNNAC 2 cut(s) 501, 511
Hpy188I TCNGA 2 cut(s) 406, 462
Hpy188III TCNNGA 6 cut(s) 71, 110, 124, 131, 559, 590
Hpy8I GTNNAC 2 cut(s) 501, 511
HpyAV CCTTC 3 cut(s) 148, 457, 587
HpyCH4III ACNGT 1 cut(s) 607
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 3 cut(s) 228, 395, 602
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 2 cut(s) 338, 569
HpySE526I ACGT 1 cut(s) 114
Hsp92I GRCGYC 1 cut(s) 492
Hsp92II CATG 4 cut(s) 91, 348, 368, 380
Ksp22I TGATCA 1 cut(s) 249
Kzo9I GATC 1 cut(s) 249
LmnI GCTCC 2 cut(s) 466, 651
Lsp1109I GCAGC 2 cut(s) 335, 586
MaeI CTAG 2 cut(s) 131, 585
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 3 cut(s) 360, 383, 615
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MboII GAAGA 5 cut(s) 33, 36, 86, 227, 230
MfeI CAATTG 1 cut(s) 476
MhlI GDGCHC 2 cut(s) 141, 656
MluCI AATT 6 cut(s) 24, 311, 453, 476, 535, 675
MnlI CCTC 8 cut(s) 113, 127, 187, 211, 315, 412, 426, 517
MseI TTAA 3 cut(s) 66, 314, 694
MslI CAYNNNNRTG 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 4 cut(s) 94, 150, 151, 353
MunI CAATTG 1 cut(s) 476
MvaI CCWGG 2 cut(s) 94, 353
MwoI GCNNNNNNNGC 1 cut(s) 89
NciI CCSGG 2 cut(s) 150, 151
NdeII GATC 1 cut(s) 249
NlaIII CATG 4 cut(s) 91, 348, 368, 380
NlaIV GGNNCC 1 cut(s) 468
NmuCI GTSAC 1 cut(s) 360
PaqCI CACCTGC 1 cut(s) 271
PfeI GAWTC 3 cut(s) 38, 127, 303
PflFI GACNNNGTC 1 cut(s) 294
PkrI GCNGC 2 cut(s) 350, 601
PsiI TTATAA 1 cut(s) 681
Psp6I CCWGG 2 cut(s) 92, 351
PspGI CCWGG 2 cut(s) 92, 351
PspN4I GGNNCC 1 cut(s) 468
PspPI GGNCC 2 cut(s) 100, 413
PsyI GACNNNGTC 1 cut(s) 294
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 1 cut(s) 574
RsaNI GTAC 1 cut(s) 573
RseI CAYNNNNRTG 1 cut(s) 56
SaqAI TTAA 3 cut(s) 66, 314, 694
SatI GCNGC 2 cut(s) 349, 600
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 2 cut(s) 100, 413
ScrFI CCNGG 4 cut(s) 94, 150, 151, 353
SduI GDGCHC 2 cut(s) 141, 656
SinI GGWCC 1 cut(s) 413
SmaI CCCGGG 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 56
Sse9I AATT 6 cut(s) 24, 311, 453, 476, 535, 675
SsiI CCGC 1 cut(s) 201
SspMI CTAG 2 cut(s) 131, 585
StyD4I CCNGG 4 cut(s) 92, 148, 149, 351
StyI CCWWGG 1 cut(s) 576
TaaI ACNGT 1 cut(s) 607
TaiI ACGT 1 cut(s) 117
TaqI TCGA 2 cut(s) 70, 125
TasI AATT 6 cut(s) 24, 311, 453, 476, 535, 675
TfiI GAWTC 3 cut(s) 38, 127, 303
Tru1I TTAA 3 cut(s) 66, 314, 694
Tru9I TTAA 3 cut(s) 66, 314, 694
TseFI GTSAC 1 cut(s) 360
TseI GCWGC 2 cut(s) 348, 599
Tsp45I GTSAC 1 cut(s) 360
TspDTI ATGAA 1 cut(s) 228
TspMI CCCGGG 1 cut(s) 149
Tth111I GACNNNGTC 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 413
XapI RAATTY 2 cut(s) 453, 535
XbaI TCTAGA 1 cut(s) 130
XmaI CCCGGG 1 cut(s) 149
XspI CTAG 2 cut(s) 131, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.