Rorug05G0048600

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002942
Physical Location & Seq
Reverse (-)
4241352 .. 4250997
9646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0048600.1

Sequence Viewer

Length: 1311 bp
ATGTCTCCTGATTATGACACAAAGGAAATAAAGAACATATATGTTGATTGTGGAAAGCCAGTTACCTCACAGAGAATTAATTCTTCAAAAGTTTTACCCCCATTGGATTTAAAGGAAACTAGTGCTAAGAAGCAGATTCCTGCAGCAGGGTCGCTCCCAAAGTCTAATGAAAAGACGGTCAATAAATCCCTAGTTGTGCCTAGCATCGTACCTCGAAGCAGTCCCAATGCAAAAGACTCAGCTAACTCTGGAAGAGAATCTGTTGCATTTTCGAAAACTAGGCGTGGTATGTTGGTCAGACCAGCTCATGTGCGAAGCCCATCAAATAGCAAAGTTGACGTGGAGAAGCTACCATTGGCCGTTGAATCTGAAACTTTCAGCATTGTCGTTGTACCAGGAAGGGCTCGCACCCTGGTTGAGAGATTTGAAAGGAGAGAGAGATTTAGTAGCAATGACGATCAAGCAACTGGCGTATTTGGTCCCGTGATACCTGAATATCAATCAACCAGCATATCTCGTAATGTGATACCTGAAGATAAAGCAACTAGCATATGTTGTCCCGTGATGCATGAAATGGATAAAACATTCACCATGCAGCGAGAAGAAGAACCTCAAATTTCTGGGAGGCACATGTCATCTGCAAACAATGATCCTGCTGAAGATCTGATGCAAACTCATGATGCATTCCTAAGTACCCTTCGATCCCGCCTGACAAAACTGCAGGTGGTGAGGCATTTTTGGGAACGAAATGATATTAAAGGTGCTATCAGTGCTATCAGAAAGCTGCCAGATCATTCGGTACAAGAAGATGTGATTAGTGTTATCCTGGAGAAAATGGATATTCTGACATTAGATCTCTTTTCGTGTTTGCTGCCTGTGCTTCTGGGCTTACTTGATAGCAAAATTGAGAGGCATGCACATGTGTCATTGGAGATGCTGTTGAAGCTAGTAGCAGTCTTTGGCCCAGTGATACGGTCAACCATTTCAGCACCTCCAGCGGTCGGAGTCAATCTTCAGGCAGAGCAAAGGCTGGAGTGCTGCAACCAATGCTCTGTACACCTGCAAAAGATCCAGAAAATTCTCCCAGTCTTTGTAAGGTTAGATCCTGACACCAGTGATGTGATAGAAGGGGGGCGTGCTGGCAAGATGTGCTCTAGAATTGAATCTAATTCTTCAAGAGTCATAACAGATACTGTGTCAGAACTGCAAAAGGGTGGCTTCACTGATATAATGTGTAACAGGATTGCATACACATTCATCCCAAGTTACAGTTCCTATCACAATTGTCTCAATGCTCTCTACCTCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

436

Amino Acids

48.43

Weight (kDa)

8.44

Isoelectric Point (pI)

58.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Katanin_con80 PF13925 224 - 366 5.4e-50 con80 domain of Katanin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 712, 1068
Acc36I ACCTGC 2 cut(s) 712, 1068
AciI CCGC 2 cut(s) 706, 998
AclWI GGATC 4 cut(s) 644, 696, 1063, 1097
AcoI YGGCCR 1 cut(s) 357
AcsI RAATTY 2 cut(s) 615, 1077
AcuI CTGAAG 3 cut(s) 552, 678, 998
AfaI GTAC 5 cut(s) 210, 393, 694, 801, 1056
AfiI CCNNNNNNNGG 2 cut(s) 146, 1001
AflIII ACRYGT 2 cut(s) 630, 919
AgsI TTSAA 6 cut(s) 87, 365, 428, 943, 1163, 1176
AhlI ACTAGT 1 cut(s) 119
AjiI CACGTC 1 cut(s) 340
AjnI CCWGG 3 cut(s) 394, 411, 825
AjuI GAANNNNNNNTTGG 4 cut(s) 338, 370, 1255, 1287
AluBI AGCT 5 cut(s) 242, 305, 349, 784, 946
AluI AGCT 5 cut(s) 242, 305, 349, 784, 946
Alw21I GWGCWC 1 cut(s) 1154
Alw26I GTCTC 2 cut(s) 9, 1292
AlwI GGATC 4 cut(s) 644, 696, 1063, 1097
AlwNI CAGNNNCTG 1 cut(s) 1193
AoxI GGCC 2 cut(s) 357, 961
ApeKI GCWGC 5 cut(s) 143, 595, 784, 871, 1038
ApoI RAATTY 2 cut(s) 615, 1077
AseI ATTAAT 1 cut(s) 78
Asp700I GAANNNNTTC 1 cut(s) 79
AspS9I GGNCC 2 cut(s) 479, 962
AsuHPI GGTGA 2 cut(s) 580, 739
AsuII TTCGAA 1 cut(s) 272
AvaII GGWCC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 406
Bbv12I GWGCWC 1 cut(s) 1154
BbvI GCAGC 5 cut(s) 155, 607, 771, 858, 1025
BccI CCATC 1 cut(s) 328
BceAI ACGGC 1 cut(s) 344
BcgI CGANNNNNNTGC 2 cut(s) 132, 166
BciT130I CCWGG 3 cut(s) 396, 413, 827
BcoDI GTCTC 2 cut(s) 9, 1292
BcuI ACTAGT 1 cut(s) 119
BfaI CTAG 8 cut(s) 120, 191, 201, 279, 546, 947, 1155, 1309
BfmI CTRYAG 2 cut(s) 141, 719
BfuAI ACCTGC 2 cut(s) 712, 1068
BglII AGATCT 2 cut(s) 661, 853
BisI GCNGC 5 cut(s) 144, 596, 785, 872, 1039
BlsI GCNGC 5 cut(s) 145, 597, 786, 873, 1040
Bme1390I CCNGG 3 cut(s) 396, 413, 827
Bme18I GGWCC 1 cut(s) 479
BmgBI CACGTC 1 cut(s) 340
BmgT120I GGNCC 2 cut(s) 479, 962
BmiI GGNNCC 1 cut(s) 481
BmrFI CCNGG 3 cut(s) 396, 413, 827
BmrI ACTGGG 2 cut(s) 959, 1079
BmsI GCATC 5 cut(s) 213, 555, 657, 670, 924
BmuI ACTGGG 2 cut(s) 959, 1079
BpmI CTGGAG 3 cut(s) 848, 978, 1052
Bpu14I TTCGAA 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 411
BsaXI ACNNNNNCTCC 2 cut(s) 923, 953
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 1001
Bse1I ACTGG 5 cut(s) 59, 472, 965, 1085, 1113
Bse3DI GCAATG 1 cut(s) 457
BseBI CCWGG 3 cut(s) 396, 413, 827
BseDI CCNNGG 1 cut(s) 411
BseGI GGATG 1 cut(s) 1257
BseLI CCNNNNNNNGG 2 cut(s) 146, 1001
BseMI GCAATG 1 cut(s) 457
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 5 cut(s) 59, 472, 965, 1085, 1113
BseRI GAGGAG 1 cut(s) 1295
BseXI GCAGC 5 cut(s) 155, 607, 771, 858, 1025
Bsh1285I CGRYCG 1 cut(s) 1002
BshFI GGCC 2 cut(s) 359, 963
BsiEI CGRYCG 1 cut(s) 1002
BsiHKAI GWGCWC 1 cut(s) 1154
BslFI GGGAC 3 cut(s) 207, 465, 543
BslI CCNNNNNNNGG 2 cut(s) 146, 1001
BsmAI GTCTC 2 cut(s) 9, 1292
BsmFI GGGAC 3 cut(s) 207, 465, 543
BsmI GAATGC 1 cut(s) 683
BsnI GGCC 2 cut(s) 359, 963
Bsp119I TTCGAA 1 cut(s) 272
Bsp1286I GDGCHC 2 cut(s) 406, 1154
Bsp1407I TGTACA 1 cut(s) 1054
Bsp143I GATC 8 cut(s) 457, 649, 661, 701, 790, 853, 1068, 1102
BspACI CCGC 2 cut(s) 706, 998
BspANI GGCC 2 cut(s) 359, 963
BspCNI CTCAG 1 cut(s) 251
BspHI TCATGA 1 cut(s) 676
BspLI GGNNCC 1 cut(s) 481
BspMAI CTGCAG 2 cut(s) 145, 723
BspMI ACCTGC 2 cut(s) 712, 1068
BspPI GGATC 4 cut(s) 644, 696, 1063, 1097
BspT104I TTCGAA 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 457
BsrGI TGTACA 1 cut(s) 1054
BsrI ACTGG 5 cut(s) 59, 472, 965, 1085, 1113
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 8 cut(s) 457, 649, 661, 701, 790, 853, 1068, 1102
Bst2UI CCWGG 3 cut(s) 396, 413, 827
Bst4CI ACNGT 4 cut(s) 178, 975, 1195, 1271
Bst6I CTCTTC 1 cut(s) 247
BstAPI GCANNNNNTGC 2 cut(s) 1047, 1149
BstAUI TGTACA 1 cut(s) 1054
BstBI TTCGAA 1 cut(s) 272
BstC8I GCNNGC 4 cut(s) 406, 915, 1137, 1141
BstDEI CTNAG 3 cut(s) 126, 238, 689
BstENI CCTNNNNNAGG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 1257
BstKTI GATC 8 cut(s) 460, 652, 664, 704, 793, 856, 1071, 1105
BstMAI GTCTC 2 cut(s) 9, 1292
BstMBI GATC 8 cut(s) 457, 649, 661, 701, 790, 853, 1068, 1102
BstMCI CGRYCG 1 cut(s) 1002
BstMWI GCNNNNNNNGC 6 cut(s) 770, 877, 943, 995, 1047, 1149
BstNI CCWGG 3 cut(s) 396, 413, 827
BstNSI RCATGY 3 cut(s) 634, 917, 923
BstSCI CCNGG 3 cut(s) 394, 411, 825
BstSFI CTRYAG 2 cut(s) 141, 719
BstV1I GCAGC 5 cut(s) 155, 607, 771, 858, 1025
BstX2I RGATCY 4 cut(s) 661, 853, 1068, 1102
BstYI RGATCY 4 cut(s) 661, 853, 1068, 1102
BsuRI GGCC 2 cut(s) 359, 963
BtrI CACGTC 1 cut(s) 340
BtsCI GGATG 1 cut(s) 1257
BtsIMutI CAGTG 4 cut(s) 775, 972, 1120, 1221
BveI ACCTGC 2 cut(s) 712, 1068
Cac8I GCNNGC 4 cut(s) 406, 915, 1137, 1141
CaiI CAGNNNCTG 1 cut(s) 1193
CciI TCATGA 1 cut(s) 676
Cfr13I GGNCC 2 cut(s) 479, 962
Csp6I GTAC 5 cut(s) 209, 392, 693, 800, 1055
CviAII CATG 7 cut(s) 308, 569, 592, 631, 677, 914, 920
CviQI GTAC 5 cut(s) 209, 392, 693, 800, 1055
DdeI CTNAG 3 cut(s) 126, 238, 689
DpnI GATC 8 cut(s) 459, 651, 663, 703, 792, 855, 1070, 1104
DpnII GATC 8 cut(s) 457, 649, 661, 701, 790, 853, 1068, 1102
DraI TTTAAA 1 cut(s) 111
EaeI YGGCCR 1 cut(s) 357
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 406
Eco47I GGWCC 1 cut(s) 479
Eco57I CTGAAG 3 cut(s) 552, 678, 998
EcoNI CCTNNNNNAGG 1 cut(s) 144
EcoRII CCWGG 3 cut(s) 394, 411, 825
EcoT22I ATGCAT 2 cut(s) 570, 685
EcoT38I GRGCYC 1 cut(s) 406
FaeI CATG 7 cut(s) 311, 572, 595, 634, 680, 917, 923
FalI AAGNNNNNCTT 2 cut(s) 1202, 1234
FaqI GGGAC 3 cut(s) 207, 465, 543
FatI CATG 7 cut(s) 307, 568, 591, 630, 676, 913, 919
FauI CCCGC 1 cut(s) 713
FauNDI CATATG 1 cut(s) 551
Fnu4HI GCNGC 5 cut(s) 144, 596, 785, 872, 1039
FokI GGATG 1 cut(s) 1244
FriOI GRGCYC 1 cut(s) 406
Fsp4HI GCNGC 5 cut(s) 144, 596, 785, 872, 1039
FspBI CTAG 8 cut(s) 120, 191, 201, 279, 546, 947, 1155, 1309
GluI GCNGC 5 cut(s) 144, 596, 785, 872, 1039
GsuI CTGGAG 3 cut(s) 848, 978, 1052
HaeIII GGCC 2 cut(s) 359, 963
Hin1II CATG 7 cut(s) 311, 572, 595, 634, 680, 917, 923
HincII GTYRAC 2 cut(s) 337, 978
HindII GTYRAC 2 cut(s) 337, 978
HinfI GANTC 7 cut(s) 136, 236, 257, 365, 1005, 1163, 1179
HphI GGTGA 2 cut(s) 580, 739
Hpy166II GTNNAC 3 cut(s) 337, 978, 1057
Hpy188I TCNGA 7 cut(s) 299, 370, 666, 779, 846, 1004, 1201
Hpy188III TCNNGA 7 cut(s) 8, 249, 677, 1072, 1106, 1155, 1176
Hpy8I GTNNAC 3 cut(s) 337, 978, 1057
HpyAV CCTTC 3 cut(s) 393, 707, 1121
HpyCH4III ACNGT 4 cut(s) 178, 975, 1195, 1271
HpyCH4IV ACGT 1 cut(s) 339
HpyF10VI GCNNNNNNNGC 6 cut(s) 770, 877, 943, 995, 1047, 1149
HpyF3I CTNAG 3 cut(s) 126, 238, 689
HpySE526I ACGT 1 cut(s) 339
Hsp92II CATG 7 cut(s) 311, 572, 595, 634, 680, 917, 923
Kzo9I GATC 8 cut(s) 457, 649, 661, 701, 790, 853, 1068, 1102
LmnI GCTCC 1 cut(s) 159
Lsp1109I GCAGC 5 cut(s) 155, 607, 771, 858, 1025
LweI GCATC 5 cut(s) 213, 555, 657, 670, 924
MaeI CTAG 8 cut(s) 120, 191, 201, 279, 546, 947, 1155, 1309
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 3 cut(s) 61, 1235, 1265
MalI GATC 8 cut(s) 459, 651, 663, 703, 792, 855, 1070, 1104
MboI GATC 8 cut(s) 457, 649, 661, 701, 790, 853, 1068, 1102
MboII GAAGA 9 cut(s) 75, 264, 545, 614, 617, 671, 818, 1004, 1164
MfeI CAATTG 1 cut(s) 1282
MflI RGATCY 4 cut(s) 661, 853, 1068, 1102
MhlI GDGCHC 2 cut(s) 406, 1154
MluCI AATT 8 cut(s) 75, 79, 615, 903, 1077, 1158, 1168, 1282
MlyI GAGTC 3 cut(s) 230, 1014, 1188
MmeI TCCRAC 1 cut(s) 982
MnlI CCTC 7 cut(s) 76, 222, 618, 621, 723, 903, 1002
Mph1103I ATGCAT 2 cut(s) 570, 685
MroXI GAANNNNTTC 1 cut(s) 79
MseI TTAA 3 cut(s) 78, 110, 756
MslI CAYNNNNRTG 1 cut(s) 918
MspA1I CMGCKG 1 cut(s) 998
MspR9I CCNGG 3 cut(s) 396, 413, 827
MunI CAATTG 1 cut(s) 1282
Mva1269I GAATGC 1 cut(s) 683
MvaI CCWGG 3 cut(s) 396, 413, 827
MwoI GCNNNNNNNGC 6 cut(s) 770, 877, 943, 995, 1047, 1149
NdeI CATATG 1 cut(s) 551
NdeII GATC 8 cut(s) 457, 649, 661, 701, 790, 853, 1068, 1102
NlaIII CATG 7 cut(s) 311, 572, 595, 634, 680, 917, 923
NlaIV GGNNCC 1 cut(s) 481
NsiI ATGCAT 2 cut(s) 570, 685
NspI RCATGY 3 cut(s) 634, 917, 923
NspV TTCGAA 1 cut(s) 272
PaeI GCATGC 1 cut(s) 917
PagI TCATGA 1 cut(s) 676
PaqCI CACCTGC 2 cut(s) 712, 1068
PciI ACATGT 2 cut(s) 630, 919
PctI GAATGC 1 cut(s) 683
PdmI GAANNNNTTC 1 cut(s) 79
PfeI GAWTC 4 cut(s) 136, 257, 365, 1163
PfoI TCCNGGA 1 cut(s) 825
PkrI GCNGC 5 cut(s) 145, 597, 786, 873, 1040
PleI GAGTC 3 cut(s) 230, 1013, 1187
PpsI GAGTC 3 cut(s) 230, 1013, 1187
PscI ACATGT 2 cut(s) 630, 919
PshBI ATTAAT 1 cut(s) 78
Psp6I CCWGG 3 cut(s) 394, 411, 825
PspGI CCWGG 3 cut(s) 394, 411, 825
PspN4I GGNNCC 1 cut(s) 481
PspPI GGNCC 2 cut(s) 479, 962
PstI CTGCAG 2 cut(s) 145, 723
PstNI CAGNNNCTG 1 cut(s) 1193
PsuI RGATCY 4 cut(s) 661, 853, 1068, 1102
RsaI GTAC 5 cut(s) 210, 393, 694, 801, 1056
RsaNI GTAC 5 cut(s) 209, 392, 693, 800, 1055
RseI CAYNNNNRTG 1 cut(s) 918
SaqAI TTAA 3 cut(s) 78, 110, 756
SatI GCNGC 5 cut(s) 144, 596, 785, 872, 1039
Sau3AI GATC 8 cut(s) 457, 649, 661, 701, 790, 853, 1068, 1102
Sau96I GGNCC 2 cut(s) 479, 962
SchI GAGTC 3 cut(s) 230, 1014, 1188
ScrFI CCNGG 3 cut(s) 396, 413, 827
SduI GDGCHC 2 cut(s) 406, 1154
SfaNI GCATC 5 cut(s) 213, 555, 657, 670, 924
SfcI CTRYAG 2 cut(s) 141, 719
SfuI TTCGAA 1 cut(s) 272
SinI GGWCC 1 cut(s) 479
SmiMI CAYNNNNRTG 1 cut(s) 918
SpeI ACTAGT 1 cut(s) 119
SphI GCATGC 1 cut(s) 917
Sse9I AATT 8 cut(s) 75, 79, 615, 903, 1077, 1158, 1168, 1282
SsiI CCGC 2 cut(s) 706, 998
SspMI CTAG 8 cut(s) 120, 191, 201, 279, 546, 947, 1155, 1309
StyD4I CCNGG 3 cut(s) 394, 411, 825
TaaI ACNGT 4 cut(s) 178, 975, 1195, 1271
TaiI ACGT 1 cut(s) 342
TaqI TCGA 3 cut(s) 214, 272, 700
TasI AATT 8 cut(s) 75, 79, 615, 903, 1077, 1158, 1168, 1282
TatI WGTACW 1 cut(s) 1054
TfiI GAWTC 4 cut(s) 136, 257, 365, 1163
Tru1I TTAA 3 cut(s) 78, 110, 756
Tru9I TTAA 3 cut(s) 78, 110, 756
TscAI CASTG 4 cut(s) 775, 972, 1120, 1228
TseI GCWGC 5 cut(s) 143, 595, 784, 871, 1038
TspDTI ATGAA 3 cut(s) 183, 585, 1246
TspRI CASTG 4 cut(s) 775, 972, 1120, 1228
VpaK11BI GGWCC 1 cut(s) 479
VspI ATTAAT 1 cut(s) 78
XagI CCTNNNNNAGG 1 cut(s) 144
XapI RAATTY 2 cut(s) 615, 1077
XbaI TCTAGA 1 cut(s) 1154
XceI RCATGY 3 cut(s) 634, 917, 923
XmnI GAANNNNTTC 1 cut(s) 79
XspI CTAG 8 cut(s) 120, 191, 201, 279, 546, 947, 1155, 1309
Zsp2I ATGCAT 2 cut(s) 570, 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.